1) Message boards : ATLAS Application : ATLAS v0.50 and 0.51 (Message 5303)
Posted 23 Dec 2017 by Profile Dingo
Post:

Checking for CVMFS
sh: cvmfs_config: command not found
sh: cvmfs_config: command not found
sh: cvmfs_config: command not found
check cvmfs return values are 32512, 32512
CVMFS not found, aborting


You have to install CVMFS and Singularity to run the native app - please see this thread for more details: https://lhcathome.cern.ch/lhcathome/forum_thread.php?id=4395



I installed the two applications but still get the same error. I stopped and started boinc after the install. https://lhcathomedev.cern.ch/lhcathome-dev/result.php?resultid=373956

The system is Linux CentOS Linux 7 (Core) [3.10.0-693.11.1.el7.x86_64] and this shows that the software is loaded:

[root@dingo4 ~]# yum info cvmfs
Loaded plugins: fastestmirror
Loading mirror speeds from cached hostfile
* base: centos.gbeservers.com
* extras: mirror.steadfast.net
* updates: mirror.dal10.us.leaseweb.net
Available Packages
Name : cvmfs
Arch : x86_64
Version : 2.4.4
Release : 1.el7.centos
Size : 8.8 M
Repo : cernvm/7/x86_64
Summary : CernVM File System
License : BSD
Description : HTTP File System for Distributing Software to CernVM.
: See http://cernvm.cern.ch
: Copyright (c) CERN

----------------------------------------------------------------

yum could not find singularity as it wasn't installed with yum. But it is on the system:

[root@dingo4 ~]# find / -name singularity
/root/singularity
/root/singularity/bin/singularity
/root/singularity/etc/bash_completion.d/singularity
/usr/local/bin/singularity
/usr/local/etc/bash_completion.d/singularity
/usr/local/etc/singularity
/usr/local/include/singularity
/usr/local/lib/singularity
/usr/local/libexec/singularity
/usr/local/var/singularity


I cannot seem to run this any help appreciated.
2) Message boards : ATLAS Application : ATLAS v0.50 and 0.51 (Message 5292)
Posted 22 Dec 2017 by Profile Dingo
Post:
All my Atlas work failed on this machine. https://lhcathomedev.cern.ch/lhcathome-dev/show_host_detail.php?hostid=2290

This is an example:

Name DyAMDm4oKmrnOmbckoZBDNAoABFKDmABFKDm4NGKDmABFKDmPLzY5n_0
Workunit 360631
Created 21 Dec 2017, 18:32:56 UTC
Sent 22 Dec 2017, 0:49:58 UTC
Report deadline 29 Dec 2017, 0:49:58 UTC
Received 22 Dec 2017, 3:50:17 UTC
Server state Over
Outcome Computation error
Client state Compute error
Exit status 195 (0x000000C3) EXIT_CHILD_FAILED
Computer ID 2290
Run time 10 min 4 sec
CPU time
Validate state Invalid
Credit 0.00
Device peak FLOPS 39.97 GFLOPS
Application version ATLAS Simulation v0.50 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 6.91 MB
Peak swap size 170.48 MB
Peak disk usage 253.28 MB
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
20:11:16 (22315): wrapper (7.7.26015): starting
20:11:16 (22315): wrapper: running run_atlas (--nthreads 12)
sys.argv = ['run_atlas', '--nthreads', '12']
THREADS=12
Checking for CVMFS
sh: cvmfs_config: command not found
sh: cvmfs_config: command not found
sh: cvmfs_config: command not found
check cvmfs return values are 32512, 32512
CVMFS not found, aborting

running start_atlas return value is 1
tar czvf shared/result.tar.gz
tar: Cowardly refusing to create an empty archive
Try `tar --help' or `tar --usage' for more information.

*****************The last 100 lines of the pilot log******************
tail: cannot open &#226;&#128;&#152;pilotlog.txt&#226;&#128;&#153; for reading: No such file or directory
***************diag file************
cat: *.diag: No such file or directory
******************************WorkDir***********************
total 36
drwxrwx--x 3 root root 177 Dec 21 20:11 .
drwxrwx--x 31 root root 286 Dec 14 19:37 ..
-rw-r--r-- 1 root root 0 Dec 21 20:11 boinc_lockfile
-rw-r--r-- 1 root root 8192 Dec 21 20:11 boinc_mmap_file
-rw-r--r-- 1 root root 5920 Dec 21 20:11 init_data.xml
-rw-r--r-- 1 root root 112 Dec 21 20:11 job.xml
-rwxr-xr-x 1 root root 7456 Dec 21 20:11 run_atlas
drwxrwx--x 2 root root 86 Dec 21 20:11 shared
-rw-r--r-- 1 root root 760 Dec 21 20:11 stderr.txt
-rw-r--r-- 1 root root 107 Dec 21 20:11 wrapper_26015_x86_64-pc-linux-gnuparent process exit 1
child process exit 1
20:21:19 (22315): run_atlas exited; CPU time 0.034227
20:21:19 (22315): app exit status: 0x1
20:21:19 (22315): called boinc_finish(195)

</stderr_txt>
]]>[/url]
3) Message boards : LHCb Application : New version v1.02 (Message 5291)
Posted 22 Dec 2017 by Profile Dingo
Post:
I have run threee of theese and they all end in error code 5. This is an example LHCb Simulation v1.02 (vbox64_mt_mcore)
x86_64-pc-linux-gnu

Name	LHCb_25826_1513818422.243445_0
Workunit	360294
Created	21 Dec 2017, 1:07:05 UTC
Sent	21 Dec 2017, 12:33:30 UTC
Report deadline	28 Dec 2017, 12:33:30 UTC
Received	21 Dec 2017, 12:57:06 UTC
Server state	Over
Outcome	Computation error
Client state	Compute error
Exit status	5 (0x00000005) Unknown error code
Computer ID	2332
Run time	30 sec
CPU time	
Validate state	Invalid
Credit	0.00
Device peak FLOPS	34.79 GFLOPS
Application version	LHCb Simulation v1.02 (vbox64_mt_mcore)
x86_64-pc-linux-gnu
Peak working set size	16.36 MB
Peak swap size	317.56 MB
Peak disk usage	2,382.03 MB
Stderr output
<core_client_version>7.6.33</core_client_version>
<![CDATA[
<message>
process exited with code 5 (0x5, -251)
</message>
<stderr_txt>
2017-12-21 07:36:44 (11935): vboxwrapper (7.7.26196): starting
2017-12-21 07:36:44 (11935): Feature: Checkpoint interval offset (308 seconds)
2017-12-21 07:36:44 (11935): Detected: VirtualBox VboxManage Interface (Version: 5.2.4)
2017-12-21 07:36:44 (11935): Detected: Minimum checkpoint interval (600.000000 seconds)
2017-12-21 07:36:44 (11935): Detected: Heartbeat check (file: 'heartbeat' every 1200.000000 seconds)
2017-12-21 07:36:44 (11935): Successfully copied 'init_data.xml' to the shared directory.
2017-12-21 07:36:44 (11935): Create VM. (boinc_d9679f03a02df903, slot#35)
2017-12-21 07:37:00 (11935): Setting Memory Size for VM. (1830MB)
2017-12-21 07:37:00 (11935): Setting CPU Count for VM. (12)
2017-12-21 07:37:00 (11935): Setting Chipset Options for VM.
2017-12-21 07:37:00 (11935): Setting Boot Options for VM.
2017-12-21 07:37:00 (11935): Setting Network Configuration for NAT.
2017-12-21 07:37:00 (11935): Enabling VM Network Access.
2017-12-21 07:37:13 (11935): Disabling USB Support for VM.
2017-12-21 07:37:13 (11935): Disabling COM Port Support for VM.
2017-12-21 07:37:13 (11935): Disabling LPT Port Support for VM.
2017-12-21 07:37:13 (11935): Disabling Audio Support for VM.
2017-12-21 07:37:13 (11935): Disabling Clipboard Support for VM.
2017-12-21 07:37:14 (11935): Disabling Drag and Drop Support for VM.
2017-12-21 07:37:14 (11935): Adding storage controller(s) to VM.
2017-12-21 07:37:14 (11935): Adding virtual disk drive to VM. (vm_image.vdi)
2017-12-21 07:37:19 (11935): Error in storage attach (fixed disk) for VM: -2135228411
Command:
VBoxManage -q storageattach "boinc_d9679f03a02df903" --storagectl "Hard Disk Controller" --port 0 --device 0 --type hdd --setuuid "" --medium "/usr/bin/slots/35/vm_image.vdi" 
Output:
VBoxManage: error: Could not get the storage format of the medium '/usr/bin/slots/35/vm_image.vdi' (VERR_NOT_SUPPORTED)
VBoxManage: error: Details: code VBOX_E_IPRT_ERROR (0x80bb0005), component MediumWrap, interface IMedium, callee nsISupports
VBoxManage: error: Context: "OpenMedium(Bstr(pszFilenameOrUuid).raw(), enmDevType, enmAccessMode, fForceNewUuidOnOpen, pMedium.asOutParam())" at line 179 of file VBoxManageDisk.cpp
VBoxManage: error: Invalid UUID or filename "/usr/bin/slots/35/vm_image.vdi"

2017-12-21 07:37:19 (11935): Powering off VM.
2017-12-21 07:37:19 (11935): Deregistering VM. (boinc_d9679f03a02df903, slot#35)
2017-12-21 07:37:19 (11935): Removing network bandwidth throttle group from VM.
2017-12-21 07:37:19 (11935): Removing storage controller(s) from VM.
2017-12-21 07:37:19 (11935): Removing VM from VirtualBox.
2017-12-21 07:37:20 (11935): Removing virtual disk drive from VirtualBox.

    Hypervisor System Log:


    VM Execution Log:


    VM Startup Log:


    VM Trace Log:

UUID: 24a70507-9078-46e2-abe8-80c3a9795403
Settings file: '/usr/bin/slots/35/boinc_d9679f03a02df903/boinc_d9679f03a02df903.vbox'

2017-12-21 07:37:00 (11935): 
Command: VBoxManage -q modifyvm "boinc_d9679f03a02df903" --description "LHCb_25826_1513818422.243445_0" 
Exit Code: 0
Output:

2017-12-21 07:37:00 (11935): 
Command: VBoxManage -q modifyvm "boinc_d9679f03a02df903" --memory 1830 
Exit Code: 0
Output:

2017-12-21 07:37:00 (11935): 
Command: VBoxManage -q modifyvm "boinc_d9679f03a02df903" --cpus 12 
Exit Code: 0
Output:

2017-12-21 07:37:00 (11935): 
Command: VBoxManage -q modifyvm "boinc_d9679f03a02df903" --acpi on --ioapic on 
Exit Code: 0
Output:

2017-12-21 07:37:00 (11935): 
Command: VBoxManage -q modifyvm "boinc_d9679f03a02df903" --boot1 disk --boot2 dvd --boot3 none --boot4 none 
Exit Code: 0
Output:

2017-12-21 07:37:00 (11935): 
Command: VBoxManage -q modifyvm "boinc_d9679f03a02df903" --nic1 nat --natdnsproxy1 on --cableconnected1 off 
Exit Code: 0
Output:

2017-12-21 07:37:13 (11935): 
Command: VBoxManage -q modifyvm "boinc_d9679f03a02df903" --cableconnected1 on 
Exit Code: 0
Output:

2017-12-21 07:37:13 (11935): 
Command: VBoxManage -q modifyvm "boinc_d9679f03a02df903" --usb off 
Exit Code: 0
Output:

2017-12-21 07:37:13 (11935): 
Command: VBoxManage -q modifyvm "boinc_d9679f03a02df903" --uart1 off --uart2 off 
Exit Code: 0
Output:

2017-12-21 07:37:13 (11935): 
Command: VBoxManage -q modifyvm "boinc_d9679f03a02df903" --lpt1 off --lpt2 off 
Exit Code: 0
Output:

2017-12-21 07:37:13 (11935): 
Command: VBoxManage -q modifyvm "boinc_d9679f03a02df903" --audio none 
Exit Code: 0
Output:

2017-12-21 07:37:14 (11935): 
Command: VBoxManage -q modifyvm "boinc_d9679f03a02df903" --clipboard disabled 
Exit Code: 0
Output:

2017-12-21 07:37:14 (11935): 
Command: VBoxManage -q modifyvm "boinc_d9679f03a02df903" --draganddrop disabled 
Exit Code: 0
Output:

2017-12-21 07:37:14 (11935): 
Command: VBoxManage -q storagectl "boinc_d9679f03a02df903" --name "Hard Disk Controller" --add "ide" --controller "PIIX4" 
Exit Code: 0
Output:

2017-12-21 07:37:14 (11935): 
Command: VBoxManage -q storageattach "boinc_d9679f03a02df903" --storagectl "Hard Disk Controller" --port 0 --device 0 --type hdd --setuuid "" --medium "/usr/bin/slots/35/vm_image.vdi" 
Exit Code: -2135228411
Output:
VBoxManage: error: Could not get the storage format of the medium '/usr/bin/slots/35/vm_image.vdi' (VERR_NOT_SUPPORTED)
VBoxManage: error: Details: code VBOX_E_IPRT_ERROR (0x80bb0005), component MediumWrap, interface IMedium, callee nsISupports
VBoxManage: error: Context: "OpenMedium(Bstr(pszFilenameOrUuid).raw(), enmDevType, enmAccessMode, fForceNewUuidOnOpen, pMedium.asOutParam())" at line 179 of file VBoxManageDisk.cpp
VBoxManage: error: Invalid UUID or filename "/usr/bin/slots/35/vm_image.vdi"

2017-12-21 07:37:15 (11935): 
Command: VBoxManage -q storageattach "boinc_d9679f03a02df903" --storagectl "Hard Disk Controller" --port 0 --device 0 --type hdd --setuuid "" --medium "/usr/bin/slots/35/vm_image.vdi" 
Exit Code: -2135228411
Output:
VBoxManage: error: Could not get the storage format of the medium '/usr/bin/slots/35/vm_image.vdi' (VERR_NOT_SUPPORTED)
VBoxManage: error: Details: code VBOX_E_IPRT_ERROR (0x80bb0005), component MediumWrap, interface IMedium, callee nsISupports
VBoxManage: error: Context: "OpenMedium(Bstr(pszFilenameOrUuid).raw(), enmDevType, enmAccessMode, fForceNewUuidOnOpen, pMedium.asOutParam())" at line 179 of file VBoxManageDisk.cpp
VBoxManage: error: Invalid UUID or filename "/usr/bin/slots/35/vm_image.vdi"

2017-12-21 07:37:16 (11935): 
Command: VBoxManage -q storageattach "boinc_d9679f03a02df903" --storagectl "Hard Disk Controller" --port 0 --device 0 --type hdd --setuuid "" --medium "/usr/bin/slots/35/vm_image.vdi" 
Exit Code: -2135228411
Output:
VBoxManage: error: Could not get the storage format of the medium '/usr/bin/slots/35/vm_image.vdi' (VERR_NOT_SUPPORTED)
VBoxManage: error: Details: code VBOX_E_IPRT_ERROR (0x80bb0005), component MediumWrap, interface IMedium, callee nsISupports
VBoxManage: error: Context: "OpenMedium(Bstr(pszFilenameOrUuid).raw(), enmDevType, enmAccessMode, fForceNewUuidOnOpen, pMedium.asOutParam())" at line 179 of file VBoxManageDisk.cpp
VBoxManage: error: Invalid UUID or filename "/usr/bin/slots/35/vm_image.vdi"

2017-12-21 07:37:17 (11935): 
Command: VBoxManage -q storageattach "boinc_d9679f03a02df903" --storagectl "Hard Disk Controller" --port 0 --device 0 --type hdd --setuuid "" --medium "/usr/bin/slots/35/vm_image.vdi" 
Exit Code: -2135228411
Output:
VBoxManage: error: Could not get the storage format of the medium '/usr/bin/slots/35/vm_image.vdi' (VERR_NOT_SUPPORTED)
VBoxManage: error: Details: code VBOX_E_IPRT_ERROR (0x80bb0005), component MediumWrap, interface IMedium, callee nsISupports
VBoxManage: error: Context: "OpenMedium(Bstr(pszFilenameOrUuid).raw(), enmDevType, enmAccessMode, fForceNewUuidOnOpen, pMedium.asOutParam())" at line 179 of file VBoxManageDisk.cpp
VBoxManage: error: Invalid UUID or filename "/usr/bin/slots/35/vm_image.vdi"

2017-12-21 07:37:18 (11935): 
Command: VBoxManage -q storageattach "boinc_d9679f03a02df903" --storagectl "Hard Disk Controller" --port 0 --device 0 --type hdd --setuuid "" --medium "/usr/bin/slots/35/vm_image.vdi" 
Exit Code: -2135228411
Output:
VBoxManage: error: Could not get the storage format of the medium '/usr/bin/slots/35/vm_image.vdi' (VERR_NOT_SUPPORTED)
VBoxManage: error: Details: code VBOX_E_IPRT_ERROR (0x80bb0005), component MediumWrap, interface IMedium, callee nsISupports
VBoxManage: error: Context: "OpenMedium(Bstr(pszFilenameOrUuid).raw(), enmDevType, enmAccessMode, fForceNewUuidOnOpen, pMedium.asOutParam())" at line 179 of file VBoxManageDisk.cpp
VBoxManage: error: Invalid UUID or filename "/usr/bin/slots/35/vm_image.vdi"

2017-12-21 07:37:19 (11935): 
Command: VBoxManage -q storageattach "boinc_d9679f03a02df903" --storagectl "Hard Disk Controller" --port 0 --device 0 --type hdd --setuuid "" --medium "/usr/bin/slots/35/vm_image.vdi" 
Exit Code: -2135228411
Output:
VBoxManage: error: Could not get the storage format of the medium '/usr/bin/slots/35/vm_image.vdi' (VERR_NOT_SUPPORTED)
VBoxManage: error: Details: code VBOX_E_IPRT_ERROR (0x80bb0005), component MediumWrap, interface IMedium, callee nsISupports
VBoxManage: error: Context: "OpenMedium(Bstr(pszFilenameOrUuid).raw(), enmDevType, enmAccessMode, fForceNewUuidOnOpen, pMedium.asOutParam())" at line 179 of file VBoxManageDisk.cpp
VBoxManage: error: Invalid UUID or filename "/usr/bin/slots/35/vm_image.vdi"

2017-12-21 07:37:19 (11935): 
Command: VBoxManage -q snapshot "boinc_d9679f03a02df903" list 
Exit Code: 0
Output:
This machine does not have any snapshots

2017-12-21 07:37:19 (11935): 
Command: VBoxManage -q bandwidthctl "boinc_d9679f03a02df903" remove "boinc_d9679f03a02df903_net" 
Exit Code: -2135228415
Output:
VBoxManage: error: Could not find a bandwidth group named 'boinc_d9679f03a02df903_net'
VBoxManage: error: Details: code VBOX_E_OBJECT_NOT_FOUND (0x80bb0001), component BandwidthControlWrap, interface IBandwidthControl, callee nsISupports
VBoxManage: error: Context: "DeleteBandwidthGroup(name.raw())" at line 259 of file VBoxManageBandwidthControl.cpp

2017-12-21 07:37:19 (11935): 
Command: VBoxManage -q storagectl "boinc_d9679f03a02df903" --name "Hard Disk Controller" --remove 
Exit Code: 0
Output:

2017-12-21 07:37:20 (11935): 
Command: VBoxManage -q unregistervm "boinc_d9679f03a02df903" --delete 
Exit Code: 0
Output:
0%...10%...20%...30%...40%...50%...60%...70%...80%...90%...100%

2017-12-21 07:37:20 (11935): 
Command: VBoxManage -q closemedium disk "/usr/bin/slots/35/vm_image.vdi" --delete 
Exit Code: -2135228411
Output:
VBoxManage: error: Could not get the storage format of the medium '/usr/bin/slots/35/vm_image.vdi' (VERR_NOT_SUPPORTED)
VBoxManage: error: Details: code VBOX_E_IPRT_ERROR (0x80bb0005), component MediumWrap, interface IMedium, callee nsISupports
VBoxManage: error: Context: "OpenMedium(Bstr(pszFilenameOrUuid).raw(), enmDevType, enmAccessMode, fForceNewUuidOnOpen, pMedium.asOutParam())" at line 179 of file VBoxManageDisk.cpp

07:37:25 (11935): called boinc_finish(-2135228411)

</stderr_txt>
]]>
4) Message boards : Number crunching : issue of the day (Message 808)
Posted 21 Aug 2015 by Profile Dingo
Post:
I am running CMS on my desktop OK but on my Windows 7 laptop it does not run.

It sits at 0.00% complete and when I looked at Vbox it had thid message.

Runtime error opening 'C:\ProgramData\BOINC\slots\3\boinc_7b8c6c74b1591434\boinc_7b8c6c74b1591434.vbox' for reading: -103(Path not found.).
D:\tinderbox\win-4.3\src\VBox\Main\src-server\MachineImpl.cpp[731] (long __cdecl Machine::registeredInit(void)).
Result Code:
E_FAIL (0x80004005)
Component:
Machine
Interface:
IMachine {480cf695-2d8d-4256-9c7c-cce4184fa048}



I had a look and the file is not there ?
C:\ProgramData\BOINC\slots\3\boinc_7b8c6c74b1591434\boinc_7b8c6c74b1591434.vbox

This is the host: http://boincai05.cern.ch/CMS-dev/results.php?hostid=641



©2022 CERN