| Name | BgZKDmTD5XunShfckohDCDFpABFKDmABFKDmmN1aDmABFKDmZwzXSm_1 |
| Workunit | 1888095 |
| Created | 9 Apr 2019, 22:52:18 UTC |
| Sent | 10 Apr 2019, 11:10:31 UTC |
| Report deadline | 17 Apr 2019, 11:10:31 UTC |
| Received | 11 Apr 2019, 3:07:35 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3638 |
| Run time | 14 hours 52 min 56 sec |
| CPU time | 14 hours 36 min 25 sec |
| Validate state | Valid |
| Credit | 169.85 |
| Device peak FLOPS | 1.37 GFLOPS |
| Application version | ATLAS Simulation v0.61 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.45 GB |
| Peak disk usage | 857.83 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
13:12:20 (4284): wrapper (7.7.26015): starting
13:12:20 (4284): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/0/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/0/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/0/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/0/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.17602273._033643.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
"siteid": "BOINC_MCORE",
"sitershare": null,
"space": 0,
"special_par": null,
"stageinretry": 2,
"stageoutretry": 2,
"status": "brokeroff",
"statusoverride": "offline",
"sysconfig": "manual",
"system": "arc",
"tags": "arc",
"tier": "T3",
"timefloor": 0,
"tmpdir": null,
"transferringlimit": 20000,
"tspace": "2070-01-01T00:00:00",
"use_newmover": "True",
"validatedreleases": "True",
"version": null,
"wansinklimit": null,
"wansourcelimit": null,
"wnconnectivity": "full",
"wntmpdir": null,
"workflow": "push"
}
2019-04-10 11:14:24|8862|SiteInformat| Queuedata was successfully downloaded by pilot wrapper script
2019-04-10 11:14:24|8862|ATLASSiteInf| curl command returned valid queuedata
2019-04-10 11:14:24|8862|ATLASSiteInf| Site BOINC_MCORE is currently in brokeroff mode
2019-04-10 11:14:24|8862|ATLASSiteInf| Job recovery turned off
2019-04-10 11:14:24|8862|ATLASSiteInf| Confirmed correctly formatted rucio sepath
2019-04-10 11:14:24|8862|ATLASSiteInf| Confirmed correctly formatted rucio seprodpath
2019-04-10 11:14:24|8862|SiteInformat| Evaluating queuedata
2019-04-10 11:14:24|8862|SiteInformat| Setting unset pilot variables using queuedata
2019-04-10 11:14:24|8862|SiteInformat| appdir:
2019-04-10 11:14:24|8862|pUtil.py | File registration will be done by server
2019-04-10 11:14:24|8862|pUtil.py | Updated stage-in retry number to 2
2019-04-10 11:14:24|8862|pUtil.py | Updated stage-out retry number to 2
2019-04-10 11:14:24|8862|pUtil.py | Detected unset (NULL) release/homepackage string
2019-04-10 11:14:24|8862|ATLASExperim| Application dir confirmed: /root/Downloads/BOINC/slots/0/
2019-04-10 11:14:24|8862|pilot.py | Pilot will serve experiment: Nordugrid-ATLAS
2019-04-10 11:14:24|8862|ATLASExperim| Architecture information:
2019-04-10 11:14:24|8862|ATLASExperim| Excuting command: lsb_release -a
2019-04-10 11:14:25|8862|ATLASExperim|
LSB Version: :base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-noarch:printing-4.0-amd64:printing-4.0-noarch
Distributor ID: Scientific
Description: Scientific Linux release 6.10 (Carbon)
Release: 6.10
Codename: Carbon
2019-04-10 11:14:25|8862|pUtil.py | getSiteInformation: got experiment=ATLAS
2019-04-10 11:14:25|8862|ATLASExperim| appdirs = ['/cvmfs/atlas.cern.ch/repo/sw']
2019-04-10 11:14:25|8862|ATLASExperim| head of /cvmfs/atlas.cern.ch/repo/sw/ChangeLog:
--------------------------------------------------------------------------------
2019-04-10 08:01:11 Alessandro De Salvo
* + GroupData 201904100801
2019-04-10 08:00:22 Alessandro De Salvo
* + AGISData 20190410080022
2019-04-10 07:00:19 Alessandro De Salvo
* + AGISData 20190410070019
2019-04-10 06:02:09 Alessandro De Salvo
--------------------------------------------------------------------------------
2019-04-10 11:14:25|8862|ATLASExperim| ATLAS_PYTHON_PILOT set to /usr/bin/python
2019-04-10 11:14:25|8862|pUtil.py | getSiteInformation: got experiment=ATLAS
2019-04-10 11:14:25|8862|ATLASExperim| Executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;$ATLAS_LOCAL_ROOT_BASE/utilities/checkValidity.sh (time-out: 300)
2019-04-10 11:14:25|8862|pUtil.py | Executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;$ATLAS_LOCAL_ROOT_BASE/utilities/checkValidity.sh (protected by timed_command, timeout: 300 s)
2019-04-10 11:14:27|8862|pUtil.py | Elapsed time: 2
2019-04-10 11:14:27|8862|ATLASExperim| Diagnostics tool has verified CVMFS
2019-04-10 11:14:27|8862|Node.py | Collecting machine features
2019-04-10 11:14:27|8862|Node.py | $MACHINEFEATURES not defined locally
2019-04-10 11:14:27|8862|Node.py | $JOBFEATURES not defined locally
2019-04-10 11:14:27|8862|Node.py | Executing command: hostname -i
2019-04-10 11:14:27|8862|Node.py | IP number of worker node: 10.241.124.15
2019-04-10 11:14:27|8862|pUtil.py | getSiteInformation: got experiment=Nordugrid-ATLAS
2019-04-10 11:14:27|8862|pilot.py | Using site information for experiment: Nordugrid-ATLAS
2019-04-10 11:14:27|8862|pilot.py | Will attempt to create workdir: /root/Downloads/BOINC/slots/0/Panda_Pilot_8862_1554894863
2019-04-10 11:14:27|8862|pilot.py | Creating file: /root/Downloads/BOINC/slots/0/CURRENT_SITEWORKDIR
2019-04-10 11:14:27|8862|pUtil.py | Wrote string "/root/Downloads/BOINC/slots/0/Panda_Pilot_8862_1554894863" to file: /root/Downloads/BOINC/slots/0/CURRENT_SITEWORKDIR
2019-04-10 11:14:27|8862|ATLASExperim| ATLAS_POOLCOND_PATH = /cvmfs/atlas.cern.ch/repo/conditions
2019-04-10 11:14:27|8862|pilot.py | Preparing to execute Cleaner
2019-04-10 11:14:27|8862|pilot.py | Cleaning /root/Downloads/BOINC/slots/0
2019-04-10 11:14:27|8862|Cleaner.py | Cleaner initialized with clean-up limit: 2 hours
2019-04-10 11:14:27|8862|Cleaner.py | Cleaner will scan for lost directories in verified path: /root/Downloads/BOINC/slots/0
2019-04-10 11:14:27|8862|Cleaner.py | Executing empty dirs clean-up, stage 1/5
2019-04-10 11:14:27|8862|Cleaner.py | Purged 0 empty directories
2019-04-10 11:14:27|8862|Cleaner.py | Executing work dir clean-up, stage 2/5
2019-04-10 11:14:27|8862|Cleaner.py | Purged 0 single workDirs directories
2019-04-10 11:14:27|8862|Cleaner.py | Executing maxed-out dirs clean-up, stage 3/5
2019-04-10 11:14:27|8862|Cleaner.py | Purged 0 empty directories
2019-04-10 11:14:27|8862|Cleaner.py | Executing AthenaMP clean-up, stage 4/5 <SKIPPED>
2019-04-10 11:14:27|8862|Cleaner.py | Executing PanDA Pilot dir clean-up, stage 5/5
2019-04-10 11:14:27|8862|Cleaner.py | Number of found job state files: 0
2019-04-10 11:14:27|8862|Cleaner.py | No job state files were found, aborting clean-up
2019-04-10 11:14:27|8862|pilot.py | Update frequencies:
2019-04-10 11:14:27|8862|pilot.py | ...Processes: 300 s
2019-04-10 11:14:27|8862|pilot.py | .......Space: 600 s
2019-04-10 11:14:27|8862|pilot.py | ......Server: 1800 s
2019-04-10 11:14:27|8862|pUtil.py | Timefloor set to zero in queuedata (multi-jobs disabled)
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=53550.29s
KernelTime=1232.93s
UserTime=52010.13s
CPUUsage=99%
MaxResidentMemory=2008160kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=10485
MinorPageFaults=15361869
Swaps=0
ForcedSwitches=553755
WaitSwitches=6516635
Inputs=3562408
Outputs=377928
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@FX8X
exitcode=0
******************************WorkDir***********************
insgesamt 387824
drwxrwx--x. 7 root root 4096 11. Apr 04:05 .
drwxr-x--x. 3 root root 4096 10. Apr 13:12 ..
-rw-------. 1 root root 7210745 11. Apr 04:02 agis_ddmendpoints.cvmfs.json
-rw-------. 1 root root 4829027 11. Apr 04:02 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 10. Apr 13:12 .alrb
drwxr-xr-x. 3 root root 4096 10. Apr 13:12 APPS
-rw-------. 1 root root 549 10. Apr 13:13 .asetup
-rw-------. 1 root root 492 11. Apr 04:05 BgZKDmTD5XunShfckohDCDFpABFKDmABFKDmmN1aDmABFKDmZwzXSm.diag
-rw-r--r--. 1 root root 0 10. Apr 13:12 boinc_lockfile
-rw-r--r--. 1 root root 8192 11. Apr 04:04 boinc_mmap_file
-rw-r--r--. 1 root root 537 11. Apr 04:01 boinc_task_state.xml
-rw-------. 1 root root 57 10. Apr 13:14 CURRENT_SITEWORKDIR
-rw-r--r--. 1 root root 379288903 10. Apr 13:12 EVNT.16926575._000668.pool.root.1
-rw-r--r--. 1 root root 5522 10. Apr 13:12 init_data.xml
-rw-r--r--. 1 root root 1098416 10. Apr 13:12 input.tar.gz
-rw-------. 1 root root 7490 11. Apr 04:05 jobSmallFiles.tgz
-rw-r--r--. 1 root root 112 10. Apr 13:12 job.xml
-rw-------. 1 root root 2848880 11. Apr 04:05 log.17602273._033643.job.log.1
-rw-------. 1 root root 455568 11. Apr 04:03 log.17602273._033643.job.log.tgz.1
-rw-------. 1 root root 306 11. Apr 04:02 memory_monitor_summary.json
-rw-------. 1 root root 1024 11. Apr 04:03 metadata-surl.xml
-rw-------. 1 root root 924 11. Apr 04:03 OutputFiles-4303455193.xml
-rw-------. 1 root root 463 11. Apr 04:05 output.list
-rw-------. 1 root root 11 10. Apr 13:14 pandaIDs.out
-rw-------. 1 root root 2886 10. Apr 13:14 pandaJobData_1.out
-rw-------. 1 4871 1028 2886 9. Apr 14:39 pandaJobData.out
-rw-------. 1 root root 63960 11. Apr 04:03 panda_node_struct.pickle
drwx------. 6 root root 12288 11. Apr 04:02 pilot3
-rw-r--r--. 1 root root 1089918 3. Apr 05:59 pilotcode.tar.gz
-rw-------. 1 root root 29 10. Apr 13:14 PILOT_INITDIR
-rw-------. 1 root root 137 11. Apr 04:05 pilotlog-last.txt
-rw-------. 1 root root 11343 10. Apr 13:14 pilotlog.txt
lrwxrwxrwx. 1 root root 15 10. Apr 13:14 pilot.py -> pilot3/pilot.py
lrwxrwxrwx. 1 root root 19 10. Apr 13:14 PILOTVERSION -> pilot3/PILOTVERSION
drwx------. 3 root root 4096 10. Apr 13:16 .pki
-rw-r--r--. 1 root root 3803 10. Apr 13:14 queuedata.json
-rw-r--r--. 1 root root 786 10. Apr 13:12 RTE.tar.gz
-rwxr-xr-x. 1 root root 8501 10. Apr 13:12 run_atlas
lrwxrwxrwx. 1 root root 21 10. Apr 13:14 RunJobEvent.py -> pilot3/RunJobEvent.py
lrwxrwxrwx. 1 root root 16 10. Apr 13:14 RunJob.py -> pilot3/RunJob.py
-rwx------. 1 4871 1028 15214 9. Apr 14:39 runpilot3-wrapper.sh
-rw-r--r--. 1 root root 712 11. Apr 04:05 runtime_log
-rw-r--r--. 1 root root 7659 11. Apr 04:05 runtime_log.err
drwxrwx--x. 2 root root 4096 11. Apr 04:05 shared
-rw-r--r--. 1 root root 8699 10. Apr 13:12 start_atlas.sh
-rw-------. 1 root root 19 10. Apr 13:14 START_TIME_4303455193
-rw-------. 1 root root 1 10. Apr 13:14 STATUSCODE
-rw-r--r--. 1 root root 7558 11. Apr 04:05 stderr.txt
lrwxrwxrwx. 1 root root 16 10. Apr 13:14 VmPeak.py -> pilot3/VmPeak.py
-rw-------. 1 root root 1767 11. Apr 04:03 workdir_size-4303455193.json
-rw-r--r--. 1 root root 107 10. Apr 13:12 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 11. Apr 04:04 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
04:05:14 (4284): run_atlas exited; CPU time 52011.645028
04:05:14 (4284): called boinc_finish(0)
</stderr_txt>
]]>
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