| Name | IDRMDmGIVYunShfckohDCDFpABFKDmABFKDmWpjbDmABFKDmxBzmnn_0 |
| Workunit | 1888374 |
| Created | 10 Apr 2019, 16:32:07 UTC |
| Sent | 10 Apr 2019, 17:23:32 UTC |
| Report deadline | 17 Apr 2019, 17:23:32 UTC |
| Received | 11 Apr 2019, 1:45:50 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3765 |
| Run time | 7 hours 19 min 52 sec |
| CPU time | 13 hours 51 min 49 sec |
| Validate state | Valid |
| Credit | 164.19 |
| Device peak FLOPS | 2.69 GFLOPS |
| Application version | ATLAS Simulation v0.61 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.80 GB |
| Peak swap size | 2.44 GB |
| Peak disk usage | 844.43 MB |
Stderr output
<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
19:24:49 (17282): wrapper (7.7.26015): starting
19:24:49 (17282): wrapper: running run_atlas (--nthreads 2)
singularity image is /cvmfs/atlas.cern.ch/repo/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '2']
THREADS=2
Checking for CVMFS
CVMFS is installed
OS:CentOS Linux release 7.4.1708 (Core)
This is not SLC6, need to run with Singularity....
Checking Singularity...
Singularity is installed
copy /root/slots/1/shared/ATLAS.root_0
copy /root/slots/1/shared/input.tar.gz
copy /root/slots/1/shared/RTE.tar.gz
copy /root/slots/1/shared/start_atlas.sh
export ATHENA_PROC_NUMBER=2;start atlas job with
Testing the function of Singularity...
check singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/images/singularity/x86_64-slc6.img hostname
Singularity Works...
cmd = singularity exec --pwd /root/slots/1 -B /cvmfs,/root /cvmfs/atlas.cern.ch/repo/images/singularity/x86_64-slc6.img sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.17668990._004158.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
"setokens": "ATLASDATADISK",
"site": "BOINC",
"siteid": "BOINC_MCORE",
"sitershare": null,
"space": 0,
"special_par": null,
"stageinretry": 2,
"stageoutretry": 2,
"status": "brokeroff",
"statusoverride": "offline",
"sysconfig": "manual",
"system": "arc",
"tags": "arc",
"tier": "T3",
"timefloor": 0,
"tmpdir": null,
"transferringlimit": 20000,
"tspace": "2070-01-01T00:00:00",
"use_newmover": "True",
"validatedreleases": "True",
"version": null,
"wansinklimit": null,
"wansourcelimit": null,
"wnconnectivity": "full",
"wntmpdir": null,
"workflow": "push"
}
2019-04-10 17:25:41|22137|SiteInformat| Queuedata was successfully downloaded by pilot wrapper script
2019-04-10 17:25:41|22137|ATLASSiteInf| curl command returned valid queuedata
2019-04-10 17:25:41|22137|ATLASSiteInf| Site BOINC_MCORE is currently in brokeroff mode
2019-04-10 17:25:41|22137|ATLASSiteInf| Job recovery turned off
2019-04-10 17:25:41|22137|ATLASSiteInf| Confirmed correctly formatted rucio sepath
2019-04-10 17:25:41|22137|ATLASSiteInf| Confirmed correctly formatted rucio seprodpath
2019-04-10 17:25:41|22137|SiteInformat| Evaluating queuedata
2019-04-10 17:25:41|22137|SiteInformat| Setting unset pilot variables using queuedata
2019-04-10 17:25:41|22137|SiteInformat| appdir:
2019-04-10 17:25:41|22137|pUtil.py | File registration will be done by server
2019-04-10 17:25:41|22137|pUtil.py | Updated stage-in retry number to 2
2019-04-10 17:25:41|22137|pUtil.py | Updated stage-out retry number to 2
2019-04-10 17:25:41|22137|pUtil.py | Detected unset (NULL) release/homepackage string
2019-04-10 17:25:41|22137|ATLASExperim| Appdir not set in queuedata
2019-04-10 17:25:41|22137|ATLASExperim| VO_ATLAS_SW_DIR=/cvmfs/atlas.cern.ch/repo/sw
2019-04-10 17:25:41|22137|ATLASExperim| Application dir confirmed: /cvmfs/atlas.cern.ch/repo/sw/software
2019-04-10 17:25:41|22137|pilot.py | Pilot will serve experiment: Nordugrid-ATLAS
2019-04-10 17:25:41|22137|ATLASExperim| Architecture information:
2019-04-10 17:25:41|22137|ATLASExperim| Excuting command: lsb_release -a
2019-04-10 17:25:41|22137|ATLASExperim|
sh: lsb_release: Kommando nicht gefunden.
2019-04-10 17:25:41|22137|pUtil.py | getSiteInformation: got experiment=ATLAS
2019-04-10 17:25:41|22137|ATLASExperim| appdirs = ['/cvmfs/atlas.cern.ch/repo/sw']
2019-04-10 17:25:41|22137|ATLASExperim| head of /cvmfs/atlas.cern.ch/repo/sw/ChangeLog:
--------------------------------------------------------------------------------
2019-04-10 19:06:53 Alessandro De Salvo
* + Athena_22_0_1_x86_64_slc6_gcc8_opt [22.0.1-Athena-x86_64]
2019-04-10 19:01:11 Alessandro De Salvo
* + AGISData 20190410190111
2019-04-10 19:00:43 Alessandro De Salvo
* + Athena_22_0_1_x86_64_slc6_gcc8_opt [22.0.1-Athena-x86_64]
2019-04-10 18:15:43 Alessandro De Salvo
--------------------------------------------------------------------------------
2019-04-10 17:25:41|22137|ATLASExperim| ATLAS_PYTHON_PILOT set to /usr/bin/python
2019-04-10 17:25:41|22137|pUtil.py | getSiteInformation: got experiment=ATLAS
2019-04-10 17:25:41|22137|ATLASExperim| Executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;$ATLAS_LOCAL_ROOT_BASE/utilities/checkValidity.sh (time-out: 300)
2019-04-10 17:25:41|22137|pUtil.py | Executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;$ATLAS_LOCAL_ROOT_BASE/utilities/checkValidity.sh (protected by timed_command, timeout: 300 s)
2019-04-10 17:25:42|22137|pUtil.py | Elapsed time: 0
2019-04-10 17:25:42|22137|ATLASExperim| Diagnostics tool has verified CVMFS
2019-04-10 17:25:42|22137|Node.py | Collecting machine features
2019-04-10 17:25:42|22137|Node.py | $MACHINEFEATURES not defined locally
2019-04-10 17:25:42|22137|Node.py | $JOBFEATURES not defined locally
2019-04-10 17:25:42|22137|Node.py | Executing command: hostname -i
2019-04-10 17:25:42|22137|Node.py | IP number of worker node: 10.241.124.67
2019-04-10 17:25:42|22137|pUtil.py | getSiteInformation: got experiment=Nordugrid-ATLAS
2019-04-10 17:25:42|22137|pilot.py | Using site information for experiment: Nordugrid-ATLAS
2019-04-10 17:25:42|22137|pilot.py | Will attempt to create workdir: /root/slots/1/Panda_Pilot_22137_1554917141
2019-04-10 17:25:42|22137|pilot.py | Creating file: /root/slots/1/CURRENT_SITEWORKDIR
2019-04-10 17:25:42|22137|pUtil.py | Wrote string "/root/slots/1/Panda_Pilot_22137_1554917141" to file: /root/slots/1/CURRENT_SITEWORKDIR
2019-04-10 17:25:42|22137|ATLASExperim| ATLAS_POOLCOND_PATH = /cvmfs/atlas.cern.ch/repo/conditions
2019-04-10 17:25:42|22137|pilot.py | Preparing to execute Cleaner
2019-04-10 17:25:42|22137|pilot.py | Cleaning /root/slots/1
2019-04-10 17:25:42|22137|Cleaner.py | Cleaner initialized with clean-up limit: 2 hours
2019-04-10 17:25:42|22137|Cleaner.py | Cleaner will scan for lost directories in verified path: /root/slots/1
2019-04-10 17:25:42|22137|Cleaner.py | Executing empty dirs clean-up, stage 1/5
2019-04-10 17:25:42|22137|Cleaner.py | Purged 0 empty directories
2019-04-10 17:25:42|22137|Cleaner.py | Executing work dir clean-up, stage 2/5
2019-04-10 17:25:42|22137|Cleaner.py | Purged 0 single workDirs directories
2019-04-10 17:25:42|22137|Cleaner.py | Executing maxed-out dirs clean-up, stage 3/5
2019-04-10 17:25:42|22137|Cleaner.py | Purged 0 empty directories
2019-04-10 17:25:42|22137|Cleaner.py | Executing AthenaMP clean-up, stage 4/5 <SKIPPED>
2019-04-10 17:25:42|22137|Cleaner.py | Executing PanDA Pilot dir clean-up, stage 5/5
2019-04-10 17:25:42|22137|Cleaner.py | Number of found job state files: 0
2019-04-10 17:25:42|22137|Cleaner.py | No job state files were found, aborting clean-up
2019-04-10 17:25:42|22137|pilot.py | Update frequencies:
2019-04-10 17:25:42|22137|pilot.py | ...Processes: 300 s
2019-04-10 17:25:42|22137|pilot.py | .......Space: 600 s
2019-04-10 17:25:42|22137|pilot.py | ......Server: 1800 s
2019-04-10 17:25:42|22137|pUtil.py | Timefloor set to zero in queuedata (multi-jobs disabled)
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=26369.13s
KernelTime=404.85s
UserTime=49908.84s
CPUUsage=190%
MaxResidentMemory=1952652kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=24386
MinorPageFaults=13134955
Swaps=0
ForcedSwitches=2597517
WaitSwitches=3419560
Inputs=8014216
Outputs=551824
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@apu10r
exitcode=0
******************************WorkDir***********************
insgesamt 381600
drwxrwx--x. 7 root root 4096 11. Apr 02:44 .
drwxrwx--x. 4 root root 24 8. Apr 19:45 ..
-rw-------. 1 root root 7210745 11. Apr 02:42 agis_ddmendpoints.cvmfs.json
-rw-------. 1 root root 4829003 11. Apr 02:41 agis_schedconf.cvmfs.json
drwx------. 2 root root 6 10. Apr 19:25 .alrb
drwxr-xr-x. 3 root root 17 10. Apr 19:25 APPS
-rw-------. 1 root root 533 10. Apr 19:25 .asetup
-rw-r--r--. 1 root root 0 10. Apr 19:24 boinc_lockfile
-rw-r--r--. 1 root root 8192 11. Apr 02:44 boinc_mmap_file
-rw-r--r--. 1 root root 537 11. Apr 02:32 boinc_task_state.xml
-rw-------. 1 root root 42 10. Apr 19:25 CURRENT_SITEWORKDIR
-rw-r--r--. 1 root root 374075484 10. Apr 19:25 EVNT.16926623._000084.pool.root.1
-rw-------. 1 root root 495 11. Apr 02:44 IDRMDmGIVYunShfckohDCDFpABFKDmABFKDmWpjbDmABFKDmxBzmnn.diag
-rw-r--r--. 1 root root 5902 10. Apr 19:24 init_data.xml
-rw-r--r--. 1 root root 1073473 10. Apr 19:25 input.tar.gz
-rw-------. 1 root root 7335 11. Apr 02:44 jobSmallFiles.tgz
-rw-r--r--. 1 root root 112 10. Apr 19:24 job.xml
-rw-------. 1 root root 1516961 11. Apr 02:44 log.17668990._004158.job.log.1
-rw-------. 1 root root 712078 11. Apr 02:42 log.17668990._004158.job.log.tgz.1
-rw-------. 1 root root 308 11. Apr 02:41 memory_monitor_summary.json
-rw-------. 1 root root 1024 11. Apr 02:43 metadata-surl.xml
-rw-------. 1 root root 924 11. Apr 02:42 OutputFiles-4304570545.xml
-rw-------. 1 root root 463 11. Apr 02:44 output.list
-rw-------. 1 root root 11 10. Apr 19:25 pandaIDs.out
-rw-------. 1 root root 2884 10. Apr 19:25 pandaJobData_1.out
-rw-------. 1 4871 1028 2884 10. Apr 18:30 pandaJobData.out
-rw-------. 1 root root 58665 11. Apr 02:43 panda_node_struct.pickle
drwx------. 6 root root 8192 11. Apr 02:41 pilot3
-rw-r--r--. 1 root root 1064884 10. Apr 14:08 pilotcode.tar.gz
-rw-------. 1 root root 13 10. Apr 19:25 PILOT_INITDIR
-rw-------. 1 root root 139 11. Apr 02:44 pilotlog-last.txt
-rw-------. 1 root root 11317 10. Apr 19:25 pilotlog.txt
lrwxrwxrwx. 1 root root 15 10. Apr 19:25 pilot.py -> pilot3/pilot.py
lrwxrwxrwx. 1 root root 19 10. Apr 19:25 PILOTVERSION -> pilot3/PILOTVERSION
drwx------. 3 root root 19 10. Apr 19:26 .pki
-rw-r--r--. 1 root root 3809 10. Apr 19:25 queuedata.json
-rw-r--r--. 1 root root 786 10. Apr 19:25 RTE.tar.gz
-rwxr-xr-x. 1 root root 8501 10. Apr 19:24 run_atlas
lrwxrwxrwx. 1 root root 21 10. Apr 19:25 RunJobEvent.py -> pilot3/RunJobEvent.py
lrwxrwxrwx. 1 root root 16 10. Apr 19:25 RunJob.py -> pilot3/RunJob.py
-rwx------. 1 4871 1028 15214 10. Apr 18:30 runpilot3-wrapper.sh
-rw-r--r--. 1 root root 712 11. Apr 02:44 runtime_log
-rw-r--r--. 1 root root 7343 11. Apr 02:44 runtime_log.err
drwxrwx--x. 2 root root 131 11. Apr 02:44 shared
-rw-r--r--. 1 root root 8728 10. Apr 19:25 start_atlas.sh
-rw-------. 1 root root 19 10. Apr 19:25 START_TIME_4304570545
-rw-------. 1 root root 1 10. Apr 19:25 STATUSCODE
-rw-r--r--. 1 root root 7878 11. Apr 02:44 stderr.txt
lrwxrwxrwx. 1 root root 16 10. Apr 19:25 VmPeak.py -> pilot3/VmPeak.py
-rw-------. 1 root root 886 11. Apr 02:42 workdir_size-4304570545.json
-rw-r--r--. 1 root root 107 10. Apr 19:24 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 11. Apr 02:44 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
02:44:39 (17282): run_atlas exited; CPU time 49909.511040
02:44:39 (17282): called boinc_finish(0)
</stderr_txt>
]]>
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