Stderr output

<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
04:07:35 (13866): wrapper (7.7.26015): starting
04:07:35 (13866): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)

This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/1/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/1/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/1/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/1/shared/RTE.tar.gz
start atlas job with 
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.17602273._040620.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
    "space": 0, 
    "special_par": null, 
    "stageinretry": 2, 
    "stageoutretry": 2, 
    "status": "brokeroff", 
    "statusoverride": "offline", 
    "sysconfig": "manual", 
    "system": "arc", 
    "tags": "arc", 
    "tier": "T3", 
    "timefloor": 0, 
    "tmpdir": null, 
    "transferringlimit": 20000, 
    "tspace": "2070-01-01T00:00:00", 
    "use_newmover": "True", 
    "validatedreleases": "True", 
    "version": null, 
    "wansinklimit": null, 
    "wansourcelimit": null, 
    "wnconnectivity": "full", 
    "wntmpdir": null, 
    "workflow": "push"
}

2019-04-11 02:08:54|18475|SiteInformat| Queuedata was successfully downloaded by pilot wrapper script
2019-04-11 02:08:54|18475|ATLASSiteInf| curl command returned valid queuedata
2019-04-11 02:08:54|18475|ATLASSiteInf| Site BOINC_MCORE is currently in brokeroff mode
2019-04-11 02:08:54|18475|ATLASSiteInf| Job recovery turned off
2019-04-11 02:08:54|18475|ATLASSiteInf| Confirmed correctly formatted rucio sepath
2019-04-11 02:08:54|18475|ATLASSiteInf| Confirmed correctly formatted rucio seprodpath
2019-04-11 02:08:54|18475|SiteInformat| Evaluating queuedata
2019-04-11 02:08:54|18475|SiteInformat| Setting unset pilot variables using queuedata
2019-04-11 02:08:54|18475|SiteInformat| appdir: 
2019-04-11 02:08:54|18475|pUtil.py    | File registration will be done by server
2019-04-11 02:08:54|18475|pUtil.py    | Updated stage-in retry number to 2
2019-04-11 02:08:54|18475|pUtil.py    | Updated stage-out retry number to 2
2019-04-11 02:08:54|18475|pUtil.py    | Detected unset (NULL) release/homepackage string
2019-04-11 02:08:54|18475|ATLASExperim| Appdir not set in queuedata
2019-04-11 02:08:54|18475|ATLASExperim| VO_ATLAS_SW_DIR=/cvmfs/atlas.cern.ch/repo/sw
2019-04-11 02:08:54|18475|ATLASExperim| Application dir confirmed: /cvmfs/atlas.cern.ch/repo/sw/software
2019-04-11 02:08:54|18475|pilot.py    | Pilot will serve experiment: Nordugrid-ATLAS
2019-04-11 02:08:54|18475|ATLASExperim| Architecture information:
2019-04-11 02:08:54|18475|ATLASExperim| Excuting command: lsb_release -a
2019-04-11 02:08:55|18475|ATLASExperim| 
LSB Version:	:base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-noarch:printing-4.0-amd64:printing-4.0-noarch
Distributor ID:	Scientific
Description:	Scientific Linux release 6.10 (Carbon)
Release:	6.10
Codename:	Carbon
2019-04-11 02:08:55|18475|pUtil.py    | getSiteInformation: got experiment=ATLAS
2019-04-11 02:08:55|18475|ATLASExperim| appdirs = ['/cvmfs/atlas.cern.ch/repo/sw']
2019-04-11 02:08:55|18475|ATLASExperim| head of /cvmfs/atlas.cern.ch/repo/sw/ChangeLog: 
--------------------------------------------------------------------------------
2019-04-11 04:01:14 Alessandro De Salvo
	* + AGISData 20190411040114

2019-04-11 04:00:11 Alessandro De Salvo
  * + GroupData 201904110400

2019-04-11 03:00:20 Alessandro De Salvo
	* + AGISData 20190411030020

2019-04-11 02:00:39 Alessandro De Salvo
--------------------------------------------------------------------------------
2019-04-11 02:08:55|18475|ATLASExperim| ATLAS_PYTHON_PILOT set to /usr/bin/python
2019-04-11 02:08:55|18475|pUtil.py    | getSiteInformation: got experiment=ATLAS
2019-04-11 02:08:55|18475|ATLASExperim| Executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;$ATLAS_LOCAL_ROOT_BASE/utilities/checkValidity.sh (time-out: 300)
2019-04-11 02:08:55|18475|pUtil.py    | Executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;$ATLAS_LOCAL_ROOT_BASE/utilities/checkValidity.sh (protected by timed_command, timeout: 300 s)
2019-04-11 02:08:57|18475|pUtil.py    | Elapsed time: 2
2019-04-11 02:08:57|18475|ATLASExperim| Diagnostics tool has verified CVMFS
2019-04-11 02:08:57|18475|Node.py     | Collecting machine features
2019-04-11 02:08:57|18475|Node.py     | $MACHINEFEATURES not defined locally
2019-04-11 02:08:57|18475|Node.py     | $JOBFEATURES not defined locally
2019-04-11 02:08:57|18475|Node.py     | Executing command: hostname -i
2019-04-11 02:08:57|18475|Node.py     | IP number of worker node: 10.241.124.15
2019-04-11 02:08:57|18475|pUtil.py    | getSiteInformation: got experiment=Nordugrid-ATLAS
2019-04-11 02:08:57|18475|pilot.py    | Using site information for experiment: Nordugrid-ATLAS
2019-04-11 02:08:57|18475|pilot.py    | Will attempt to create workdir: /root/Downloads/BOINC/slots/1/Panda_Pilot_18475_1554948534
2019-04-11 02:08:57|18475|pilot.py    | Creating file: /root/Downloads/BOINC/slots/1/CURRENT_SITEWORKDIR
2019-04-11 02:08:57|18475|pUtil.py    | Wrote string "/root/Downloads/BOINC/slots/1/Panda_Pilot_18475_1554948534" to file: /root/Downloads/BOINC/slots/1/CURRENT_SITEWORKDIR
2019-04-11 02:08:57|18475|ATLASExperim| ATLAS_POOLCOND_PATH = /cvmfs/atlas.cern.ch/repo/conditions
2019-04-11 02:08:57|18475|pilot.py    | Preparing to execute Cleaner
2019-04-11 02:08:57|18475|pilot.py    | Cleaning /root/Downloads/BOINC/slots/1
2019-04-11 02:08:57|18475|Cleaner.py  | Cleaner initialized with clean-up limit: 2 hours
2019-04-11 02:08:57|18475|Cleaner.py  | Cleaner will scan for lost directories in verified path: /root/Downloads/BOINC/slots/1
2019-04-11 02:08:57|18475|Cleaner.py  | Executing empty dirs clean-up, stage 1/5
2019-04-11 02:08:57|18475|Cleaner.py  | Purged 0 empty directories
2019-04-11 02:08:57|18475|Cleaner.py  | Executing work dir clean-up, stage 2/5
2019-04-11 02:08:57|18475|Cleaner.py  | Purged 0 single workDirs directories
2019-04-11 02:08:57|18475|Cleaner.py  | Executing maxed-out dirs clean-up, stage 3/5
2019-04-11 02:08:57|18475|Cleaner.py  | Purged 0 empty directories
2019-04-11 02:08:57|18475|Cleaner.py  | Executing AthenaMP clean-up, stage 4/5 <SKIPPED>
2019-04-11 02:08:57|18475|Cleaner.py  | Executing PanDA Pilot dir clean-up, stage 5/5
2019-04-11 02:08:57|18475|Cleaner.py  | Number of found job state files: 0
2019-04-11 02:08:57|18475|Cleaner.py  | No job state files were found, aborting clean-up
2019-04-11 02:08:57|18475|pilot.py    | Update frequencies:
2019-04-11 02:08:57|18475|pilot.py    | ...Processes: 300 s
2019-04-11 02:08:57|18475|pilot.py    | .......Space: 600 s
2019-04-11 02:08:57|18475|pilot.py    | ......Server: 1800 s
2019-04-11 02:08:57|18475|pUtil.py    | Timefloor set to zero in queuedata (multi-jobs disabled)
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=57004.01s
KernelTime=1247.54s
UserTime=55485.79s
CPUUsage=99%
MaxResidentMemory=2005964kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9923
MinorPageFaults=16090483
Swaps=0
ForcedSwitches=567735
WaitSwitches=6789761
Inputs=3442416
Outputs=396376
SocketReceived=0
SocketSent=0
Signals=0

nodename=maeax@FX8X
exitcode=0
******************************WorkDir***********************
insgesamt 384856
drwxrwx--x. 7 root root      4096 11. Apr 19:57 .
drwxr-x--x. 4 root root      4096 11. Apr 04:07 ..
-rw-------. 1 root root   7210745 11. Apr 19:55 agis_ddmendpoints.cvmfs.json
-rw-------. 1 root root   4835921 11. Apr 19:55 agis_schedconf.cvmfs.json
drwx------. 2 root root      4096 11. Apr 04:07 .alrb
drwxr-xr-x. 3 root root      4096 11. Apr 04:07 APPS
-rw-------. 1 root root       549 11. Apr 04:07 .asetup
-rw-r--r--. 1 root root         0 11. Apr 04:07 boinc_lockfile
-rw-r--r--. 1 root root      8192 11. Apr 19:57 boinc_mmap_file
-rw-r--r--. 1 root root       537 11. Apr 19:54 boinc_task_state.xml
-rw-------. 1 root root        58 11. Apr 04:08 CURRENT_SITEWORKDIR
-rw-r--r--. 1 root root 376061702 11. Apr 04:07 EVNT.16926575._000805.pool.root.1
-rw-r--r--. 1 root root      5522 11. Apr 04:07 init_data.xml
-rw-r--r--. 1 root root   1073478 11. Apr 04:07 input.tar.gz
-rw-------. 1 root root      7825 11. Apr 19:57 jobSmallFiles.tgz
-rw-r--r--. 1 root root       112 11. Apr 04:07 job.xml
-rw-------. 1 root root   3061374 11. Apr 19:57 log.17602273._040620.job.log.1
-rw-------. 1 root root    472189 11. Apr 19:55 log.17602273._040620.job.log.tgz.1
-rw-------. 1 root root       306 11. Apr 19:54 memory_monitor_summary.json
-rw-------. 1 root root      1024 11. Apr 19:56 metadata-surl.xml
-rw-------. 1 root root       924 11. Apr 19:56 OutputFiles-4304755366.xml
-rw-------. 1 root root       463 11. Apr 19:57 output.list
-rw-------. 1 root root        11 11. Apr 04:08 pandaIDs.out
-rw-------. 1 root root      2885 11. Apr 04:08 pandaJobData_1.out
-rw-------. 1 4871 1028      2885 11. Apr 03:55 pandaJobData.out
-rw-------. 1 root root     66757 11. Apr 19:56 panda_node_struct.pickle
drwx------. 6 root root     12288 11. Apr 19:55 pilot3
-rw-r--r--. 1 root root   1064884 10. Apr 14:08 pilotcode.tar.gz
-rw-------. 1 root root        29 11. Apr 04:08 PILOT_INITDIR
-rw-------. 1 root root       139 11. Apr 19:57 pilotlog-last.txt
-rw-------. 1 root root     11583 11. Apr 04:08 pilotlog.txt
lrwxrwxrwx. 1 root root        15 11. Apr 04:08 pilot.py -> pilot3/pilot.py
lrwxrwxrwx. 1 root root        19 11. Apr 04:08 PILOTVERSION -> pilot3/PILOTVERSION
drwx------. 3 root root      4096 11. Apr 04:11 .pki
-rw-r--r--. 1 root root      3809 11. Apr 04:09 queuedata.json
-rw-r--r--. 1 root root       786 11. Apr 04:07 RTE.tar.gz
-rwxr-xr-x. 1 root root      8501 11. Apr 04:07 run_atlas
lrwxrwxrwx. 1 root root        21 11. Apr 04:08 RunJobEvent.py -> pilot3/RunJobEvent.py
lrwxrwxrwx. 1 root root        16 11. Apr 04:08 RunJob.py -> pilot3/RunJob.py
-rwx------. 1 4871 1028     15214 11. Apr 03:55 runpilot3-wrapper.sh
-rw-r--r--. 1 root root       712 11. Apr 19:57 runtime_log
-rw-r--r--. 1 root root      7659 11. Apr 19:57 runtime_log.err
drwxrwx--x. 2 root root      4096 11. Apr 19:57 shared
-rw-r--r--. 1 root root      8699 11. Apr 04:07 start_atlas.sh
-rw-------. 1 root root        19 11. Apr 04:08 START_TIME_4304755366
-rw-------. 1 root root         1 11. Apr 04:08 STATUSCODE
-rw-r--r--. 1 root root      7723 11. Apr 19:57 stderr.txt
-rw-------. 1 root root       491 11. Apr 19:57 TQ4LDmb7dYunShfckohDCDFpABFKDmABFKDmWvNKDmABFKDmgo4Gtn.diag
lrwxrwxrwx. 1 root root        16 11. Apr 04:08 VmPeak.py -> pilot3/VmPeak.py
-rw-------. 1 root root      1867 11. Apr 19:55 workdir_size-4304755366.json
-rw-r--r--. 1 root root       107 11. Apr 04:07 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root        28 11. Apr 19:57 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
19:57:51 (13866): run_atlas exited; CPU time 55486.616752
19:57:51 (13866): called boinc_finish(0)

</stderr_txt>
]]>

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