Name dqcNDmwm6YunShfckohDCDFpABFKDmABFKDm3lALDmABFKDmMRXJEm_1
Workunit 1888775
Created 12 Apr 2019, 16:54:07 UTC
Sent 12 Apr 2019, 18:03:48 UTC
Report deadline 19 Apr 2019, 18:03:48 UTC
Received 12 Apr 2019, 19:20:48 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 1113
Run time 1 hours 12 min 36 sec
CPU time 10 min 25 sec
Validate state Valid
Credit 454.05
Device peak FLOPS 13.30 GFLOPS
Application version ATLAS Simulation v0.60 (vbox64_mt_mcore_atlas)
windows_x86_64
Peak working set size 103.94 MB
Peak swap size 156.29 MB
Peak disk usage 1.98 GB

Stderr output

<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
2019-04-12 20:07:48 (154588): vboxwrapper (7.9.26200): starting
2019-04-12 20:07:48 (154588): Feature: Checkpoint interval offset (244 seconds)
2019-04-12 20:07:48 (154588): Detected: VirtualBox COM Interface (Version: 5.2.18)
2019-04-12 20:07:48 (154588): Detected: Minimum checkpoint interval (900.000000 seconds)
2019-04-12 20:07:48 (154588): Successfully copied 'init_data.xml' to the shared directory.
2019-04-12 20:07:48 (154588): Create VM. (boinc_35901d3f4cf8fadc, slot#0)
2019-04-12 20:07:48 (154588): Setting Memory Size for VM. (6600MB)
2019-04-12 20:07:48 (154588): Setting CPU Count for VM. (4)
2019-04-12 20:07:48 (154588): Setting Chipset Options for VM.
2019-04-12 20:07:48 (154588): Setting Boot Options for VM.
2019-04-12 20:07:48 (154588): Enabling VM Network Access.
2019-04-12 20:07:48 (154588): Setting Network Configuration for NAT.
2019-04-12 20:07:48 (154588): Disabling USB Support for VM.
2019-04-12 20:07:48 (154588): Disabling COM Port Support for VM.
2019-04-12 20:07:48 (154588): Disabling LPT Port Support for VM.
2019-04-12 20:07:48 (154588): Disabling Audio Support for VM.
2019-04-12 20:07:48 (154588): Disabling Clipboard Support for VM.
2019-04-12 20:07:48 (154588): Disabling Drag and Drop Support for VM.
2019-04-12 20:07:48 (154588): Adding storage controller(s) to VM.
2019-04-12 20:07:48 (154588): Adding virtual disk drive to VM. (vm_image.vdi)
2019-04-12 20:07:48 (154588): Adding VirtualBox Guest Additions to VM.
2019-04-12 20:07:48 (154588): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2019-04-12 20:07:48 (154588): forwarding host port 35571 to guest port 80
2019-04-12 20:07:48 (154588): Enabling remote desktop for VM.
2019-04-12 20:07:48 (154588): Enabling shared directory for VM.
2019-04-12 20:07:48 (154588): Starting VM. (boinc_35901d3f4cf8fadc, slot#0)
2019-04-12 20:07:58 (154588): Guest Log: BIOS: VirtualBox 5.2.18

2019-04-12 20:07:58 (154588): Guest Log: CPUID EDX: 0x178bfbff

2019-04-12 20:07:58 (154588): Guest Log: BIOS: ata0-0: PCHS=16383/16/63 LCHS=1024/255/63

2019-04-12 20:07:58 (154588): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2019-04-12 20:07:58 (154588): Guest Log: BIOS: Booting from Hard Disk...

2019-04-12 20:07:58 (154588): Guest Log: BIOS: KBD: unsupported int 16h function 03

2019-04-12 20:07:58 (154588): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2019-04-12 20:07:58 (154588): Successfully started VM. (PID = '152108')
2019-04-12 20:07:58 (154588): Reporting VM Process ID to BOINC.
2019-04-12 20:08:03 (154588): VM state change detected. (old = 'poweroff', new = 'running')
2019-04-12 20:08:08 (154588): Detected: Web Application Enabled (http://localhost:35571)
2019-04-12 20:08:08 (154588): Detected: Remote Desktop Enabled (localhost:35572)
2019-04-12 20:08:13 (154588): Preference change detected
2019-04-12 20:08:13 (154588): Setting CPU throttle for VM. (100%)
2019-04-12 20:08:13 (154588): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2019-04-12 20:08:28 (154588): Guest Log: vboxguest: major 0, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2019-04-12 20:08:40 (154588): Guest Log: VBoxGuest: VBoxGuestCommonGuestCapsAcquire: pSession(0xffff8801ac5bdc10), OR(0x0), NOT(0xffffffff), flags(0x0)

2019-04-12 20:08:40 (154588): Guest Log: VBoxGuest: VBoxGuestCommonGuestCapsAcquire: pSession(0xffff8801b27e5810), OR(0x0), NOT(0xffffffff), flags(0x0)

2019-04-12 20:08:45 (154588): Guest Log: VBoxGuest: VBoxGuestCommonGuestCapsAcquire: pSession(0xffff8801ab81b010), OR(0x0), NOT(0xffffffff), flags(0x0)

2019-04-12 20:08:45 (154588): Guest Log: VBoxGuest: VBoxGuestCommonGuestCapsAcquire: pSession(0xffff8801b27e5a10), OR(0x0), NOT(0xffffffff), flags(0x0)

2019-04-12 20:09:10 (154588): Guest Log: Copying input files into RunAtlas.

2019-04-12 20:09:25 (154588): Guest Log: Copied input files into RunAtlas.

2019-04-12 20:09:35 (154588): Guest Log: copied the webapp to /var/www

2019-04-12 20:09:35 (154588): Guest Log: set up http_proxy http://192.168.200.1:0

2019-04-12 20:09:35 (154588): Guest Log: ATHENA_PROC_NUMBER=4

2019-04-12 20:09:35 (154588): Guest Log: Starting ATLAS job. ( )

2019-04-12 21:20:20 (154588): Guest Log: log_extracts:

2019-04-12 21:20:20 (154588): Guest Log: - Last 10 lines from /home/atlas01/RunAtlas/Panda_Pilot_7926_1555092668/PandaJob/athena_stdout.txt -

2019-04-12 21:20:20 (154588): Guest Log: PyJobTransforms.trfExe.preExecute 2019-04-12 20:13:57,032 INFO Batch/grid running - command outputs will not be echoed. Logs for EVNTtoHITS are in log.EVNTtoHITS

2019-04-12 21:20:20 (154588): Guest Log: PyJobTransforms.trfExe.preExecute 2019-04-12 20:13:57,033 INFO Now writing wrapper for substep executor EVNTtoHITS

2019-04-12 21:20:20 (154588): Guest Log: PyJobTransforms.trfExe._writeAthenaWrapper 2019-04-12 20:13:57,034 INFO Valgrind not engaged

2019-04-12 21:20:20 (154588): Guest Log: PyJobTransforms.trfExe.preExecute 2019-04-12 20:13:57,034 INFO Athena will be executed in a subshell via ['./runwrapper.EVNTtoHITS.sh']

2019-04-12 21:20:20 (154588): Guest Log: PyJobTransforms.trfExe.execute 2019-04-12 20:13:57,035 INFO Starting execution of EVNTtoHITS (['./runwrapper.EVNTtoHITS.sh'])

2019-04-12 21:20:20 (154588): Guest Log: PyJobTransforms.trfExe.execute 2019-04-12 21:17:12,994 INFO EVNTtoHITS executor returns 33

2019-04-12 21:20:20 (154588): Guest Log: PyJobTransforms.trfExe.validate 2019-04-12 21:17:13,906 ERROR Validation of return code failed: Non-zero return code from EVNTtoHITS (33) (Error code 65)

2019-04-12 21:20:20 (154588): Guest Log: PyJobTransforms.trfExe.validate 2019-04-12 21:17:13,969 INFO Scanning logfile log.EVNTtoHITS for errors

2019-04-12 21:20:20 (154588): Guest Log: PyJobTransforms.transform.execute 2019-04-12 21:17:14,017 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP"

2019-04-12 21:20:20 (154588): Guest Log: PyJobTransforms.transform.execute 2019-04-12 21:17:17,349 WARNING Transform now exiting early with exit code 65 (Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP")

2019-04-12 21:20:20 (154588): Guest Log: - Walltime -

2019-04-12 21:20:20 (154588): Guest Log: JobRetrival=1, StageIn=15, Execution=3903, StageOut=0, CleanUp=22

2019-04-12 21:20:20 (154588): Guest Log: The last 10 lines of the pilot log.

2019-04-12 21:20:20 (154588): Guest Log:     <metadata att_name="surl" att_value="srm://srm.ndgf.org:8443/srm/managerv2?SFN=/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/c6/e6/log.17669068._012192.job.log.tgz.1"/>

2019-04-12 21:20:20 (154588): Guest Log:     <metadata att_name="fsize" att_value="79309"/>

2019-04-12 21:20:20 (154588): Guest Log:     <metadata att_name="adler32" att_value="921947f6"/>

2019-04-12 21:20:20 (154588): Guest Log:   </File>

2019-04-12 21:20:20 (154588): Guest Log: </POOLFILECATALOG>

2019-04-12 21:20:20 (154588): Guest Log: 2019-04-12 19:20:16 UTC [wrapper] ---------

2019-04-12 21:20:20 (154588): Guest Log: 2019-04-12 19:20:16 UTC [wrapper] output list

2019-04-12 21:20:20 (154588): Guest Log: log.17669068._012192.job.log.tgz.1 srm://srm.ndgf.org:8443;autodir=no;spacetoken=ATLASDATADISK/srm/managerv2?SFN=/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/c6/e6/log.17669068._012192.job.log.tgz.1:checksumtype=adler32:checksumvalue=921947f6

2019-04-12 21:20:20 (154588): Guest Log: 2019-04-12 19:20:16 UTC [wrapper] ==== wrapper stdout END ====

2019-04-12 21:20:20 (154588): Guest Log: 2019-04-12 19:20:16 UTC [wrapper] ==== wrapper stderr END ====

2019-04-12 21:20:20 (154588): Guest Log: Listing of results directory

2019-04-12 21:20:20 (154588): Guest Log: total 380160

2019-04-12 21:20:20 (154588): Guest Log: -rw-r--r-- 1 atlas01 atlas01   1064884 Apr 10 14:08 pilotcode.tar.gz

2019-04-12 21:20:20 (154588): Guest Log: -rwx------ 1 atlas01 atlas01     15214 Apr 12 10:32 runpilot3-wrapper.sh

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01      2888 Apr 12 10:32 pandaJobData.out

2019-04-12 21:20:20 (154588): Guest Log: -rwxr-xr-x 1 atlas01 atlas01 373655313 Apr 12 20:09 EVNT.16926656._000243.pool.root.1

2019-04-12 21:20:20 (154588): Guest Log: -rwxr-xr-x 1 atlas01 atlas01     10355 Apr 12 20:09 init_data.xml

2019-04-12 21:20:20 (154588): Guest Log: -rwxr-xr-x 1 atlas01 atlas01   1073490 Apr 12 20:09 input.tar.gz

2019-04-12 21:20:20 (154588): Guest Log: -rwxr-xr-x 1 atlas01 atlas01      8644 Apr 12 20:09 start_atlas.sh

2019-04-12 21:20:20 (154588): Guest Log: -rwxr-xr-x 1 atlas01 atlas01       786 Apr 12 20:09 RTE.tar.gz

2019-04-12 21:20:20 (154588): Guest Log: drwxr-xr-x 3 atlas01 atlas01      4096 Apr 12 20:09 APPS

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01       243 Apr 12 20:09 setup.sh.local

2019-04-12 21:20:20 (154588): Guest Log: lrwxrwxrwx 1 atlas01 atlas01        16 Apr 12 20:10 RunJob.py -> pilot3/RunJob.py

2019-04-12 21:20:20 (154588): Guest Log: lrwxrwxrwx 1 atlas01 atlas01        21 Apr 12 20:10 RunJobEvent.py -> pilot3/RunJobEvent.py

2019-04-12 21:20:20 (154588): Guest Log: lrwxrwxrwx 1 atlas01 atlas01        16 Apr 12 20:10 VmPeak.py -> pilot3/VmPeak.py

2019-04-12 21:20:20 (154588): Guest Log: lrwxrwxrwx 1 atlas01 atlas01        19 Apr 12 20:10 PILOTVERSION -> pilot3/PILOTVERSION

2019-04-12 21:20:20 (154588): Guest Log: lrwxrwxrwx 1 atlas01 atlas01        15 Apr 12 20:10 pilot.py -> pilot3/pilot.py

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01        22 Apr 12 20:10 PILOT_INITDIR

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01        50 Apr 12 20:11 CURRENT_SITEWORKDIR

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01     11466 Apr 12 20:11 pilotlog.txt

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01         1 Apr 12 20:11 STATUSCODE

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01        11 Apr 12 20:11 pandaIDs.out

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01        19 Apr 12 20:11 START_TIME_4306777063

2019-04-12 21:20:20 (154588): Guest Log: -rw-r--r-- 1 atlas01 atlas01      3809 Apr 12 20:11 queuedata.json

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01      2888 Apr 12 20:11 pandaJobData_1.out

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01   7210745 Apr 12 20:12 agis_ddmendpoints.cvmfs.json

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01   4834429 Apr 12 20:12 agis_schedconf.cvmfs.json

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01       297 Apr 12 21:17 memory_monitor_summary.json

2019-04-12 21:20:20 (154588): Guest Log: drwx------ 6 atlas01 atlas01     12288 Apr 12 21:17 pilot3

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01       203 Apr 12 21:17 pilot_error_report.json

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01       166 Apr 12 21:18 workdir_size-4306777063.json

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01     79309 Apr 12 21:18 log.17669068._012192.job.log.tgz.1

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01      1757 Apr 12 21:18 log_extracts.txt

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01     10480 Apr 12 21:18 panda_node_struct.pickle

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01       137 Apr 12 21:20 pilotlog-last.txt

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01       598 Apr 12 21:20 metadata-surl.xml

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01      3878 Apr 12 21:20 jobSmallFiles.tgz

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01    358500 Apr 12 21:20 log.17669068._012192.job.log.1

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01       489 Apr 12 21:20 dqcNDmwm6YunShfckohDCDFpABFKDmABFKDm3lALDmABFKDmMRXJEm.diag

2019-04-12 21:20:20 (154588): Guest Log: -rw-r--r-- 1 atlas01 atlas01      7869 Apr 12 21:20 runtime_log.err

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01       241 Apr 12 21:20 output.list

2019-04-12 21:20:20 (154588): Guest Log: -rw-r--r-- 1 atlas01 atlas01       712 Apr 12 21:20 runtime_log

2019-04-12 21:20:20 (154588): Guest Log: -rw------- 1 atlas01 atlas01    808960 Apr 12 21:20 result.tar.gz

2019-04-12 21:20:20 (154588): Guest Log: No HITS file was produced

2019-04-12 21:20:20 (154588): Guest Log: Successfully finished the ATLAS job!

2019-04-12 21:20:20 (154588): Guest Log: Copying the results back to the shared directory!

2019-04-12 21:20:20 (154588): Guest Log: Copied the result file back to the shared directory and created atlas_done file!

2019-04-12 21:20:20 (154588): Guest Log: Success! Shutting down the machine.

2019-04-12 21:20:20 (154588): VM Completion File Detected.
2019-04-12 21:20:20 (154588): Powering off VM.
2019-04-12 21:20:22 (154588): Successfully stopped VM.
2019-04-12 21:20:27 (154588): Deregistering VM. (boinc_35901d3f4cf8fadc, slot#0)
2019-04-12 21:20:27 (154588): Removing virtual disk drive(s) from VM.
2019-04-12 21:20:27 (154588): Removing network bandwidth throttle group from VM.
2019-04-12 21:20:27 (154588): Removing storage controller(s) from VM.
2019-04-12 21:20:27 (154588): Removing VM from VirtualBox.
21:20:32 (154588): called boinc_finish(0)

</stderr_txt>
]]>


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