| Name | 16KKDmTqVkunShfckohDCDFpABFKDmABFKDmV3iMDmABFKDmXyEV3n_3 |
| Workunit | 1896470 |
| Created | 17 May 2019, 10:59:00 UTC |
| Sent | 17 May 2019, 11:30:22 UTC |
| Report deadline | 24 May 2019, 11:30:22 UTC |
| Received | 17 May 2019, 19:08:36 UTC |
| Server state | Over |
| Outcome | Validate error |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3406 |
| Run time | 7 hours 36 min 59 sec |
| CPU time | 6 hours 41 min 33 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 5.09 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.94 GB |
| Peak swap size | 34.27 GB |
| Peak disk usage | 831.21 MB |
Stderr output
<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
13:31:01 (34758): wrapper (7.7.26015): starting
13:31:01 (34758): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:cat: /etc/redhat-release: No such file or directory
This is not SLC6, need to run with Singularity....
Checking Singularity...
Singularity is installed
copy /home/boinc9/BOINC_TEST/slots/0/shared/start_atlas.sh
copy /home/boinc9/BOINC_TEST/slots/0/shared/RTE.tar.gz
copy /home/boinc9/BOINC_TEST/slots/0/shared/input.tar.gz
copy /home/boinc9/BOINC_TEST/slots/0/shared/ATLAS.root_0
start atlas job with
Testing the function of Singularity...
check singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img hostname
Singularity Works...
cmd = singularity exec --pwd /home/boinc9/BOINC_TEST/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.17905843._050718.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-05-17 19:07:23,890 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-17 19:07:23,892 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/boinc9/BOINC_TEST/slots/0/PanDA_Pilot-4344409192/memory_monitor_summary.json
2019-05-17 19:07:23,893 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2160664, 'maxSwap': 0, 'totRCHAR': 1570969884, 'totRBYTES': 2805683200, 'totWCHAR': 116461477, 'totWBYTES': 1638400, 'maxVMEM': 3227120, 'maxPSS': 2092487}, 'Avg': {'avgRSS': 1967977, 'rateWCHAR': 4313, 'avgVMEM': 3091482, 'avgPSS': 1920579, 'rateRCHAR': 58190, 'avgSwap': 0, 'rateRBYTES': 103925, 'rateWBYTES': 60}}
2019-05-17 19:07:23,893 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-17 19:07:23,893 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-17 19:07:23,893 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-17 19:07:23,893 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-17 19:07:23,893 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-05-17 19:07:23,894 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 15 s
2019-05-17 19:07:23,894 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-17 19:07:23,894 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 15 s
2019-05-17 19:07:23,894 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 7 s
2019-05-17 19:07:23,894 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 27277 s
2019-05-17 19:07:23,894 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 23 s
2019-05-17 19:07:23,894 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-17 19:07:23,894 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-17 19:07:23,894 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /home/boinc9/BOINC_TEST/slots/0/PanDA_Pilot-4344409192/pandatracerlog.txt (ignoring)
2019-05-17 19:07:23,894 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/boinc9/BOINC_TEST/slots/0/PanDA_Pilot-4344409192/pilotlog.txt
2019-05-17 19:07:24,038 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-05-17 19:07:24,038 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-05-17 19:07:23,890 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 17.37 B/s (using 428 data points, chi2=25534272978.833809)
2019-05-17 19:07:23,890 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=17.37"
2019-05-17 19:07:23,890 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-17 19:07:23,892 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/boinc9/BOINC_TEST/slots/0/PanDA_Pilot-4344409192/memory_monitor_summary.json
2019-05-17 19:07:23,893 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2160664, 'maxSwap': 0, 'totRCHAR': 1570969884, 'totRBYTES': 2805683200, 'totWCHAR': 116461477, 'totWBYTES': 1638400, 'maxVMEM': 3227120, 'maxPSS': 2092487}, 'Avg': {'avgRSS': 1967977, 'rateWCHAR': 4313, 'avgVMEM': 3091482, 'avgPSS': 1920579, 'rateRCHAR': 58190, 'avgSwap': 0, 'rateRBYTES': 103925, 'rateWBYTES': 60}}
2019-05-17 19:07:23,893 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-17 19:07:23,893 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-17 19:07:23,893 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-17 19:07:23,893 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-17 19:07:23,893 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-05-17 19:07:23,894 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 15 s
2019-05-17 19:07:23,894 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-17 19:07:23,894 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 15 s
2019-05-17 19:07:23,894 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 7 s
2019-05-17 19:07:23,894 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 27277 s
2019-05-17 19:07:23,894 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 23 s
2019-05-17 19:07:23,894 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-17 19:07:23,894 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-17 19:07:23,894 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /home/boinc9/BOINC_TEST/slots/0/PanDA_Pilot-4344409192/pandatracerlog.txt (ignoring)
2019-05-17 19:07:23,894 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/boinc9/BOINC_TEST/slots/0/PanDA_Pilot-4344409192/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-05-17 19:07:24,039 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /home/boinc9/BOINC_TEST/slots/0/heartbeat.json
2019-05-17 19:07:24,039 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4344409192 was dequeued from the monitored payloads queue
2019-05-17 19:07:24,967 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-17 19:07:24,967 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-05-17 19:07:24,967 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-17 19:07:24,968 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4344409192
2019-05-17 19:07:24,968 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 17905843
2019-05-17 19:07:24,968 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-05-17 19:07:24,968 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-05-17 19:07:24,968 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-05-17 19:07:24,968 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-05-17 19:07:24,968 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-05-17 19:07:24,968 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-05-17 19:07:24,968 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-05-17 19:07:24,968 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-05-17 19:07:24,968 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 24028 s
2019-05-17 19:07:24,968 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-05-17 19:07:24,969 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-05-17 19:07:24,969 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 67915
2019-05-17 19:07:24,969 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-05-17 19:07:24,969 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-05-17 19:07:24,969 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-05-17 19:07:24,969 | INFO | retrieve | pilot.util.auxiliary | make_job_report | sizes: {0: 15627239, 1: 15627544, 2: 15627615, 4: 15627639, 6: 15627663, 8: 15627687, 27308: 15824950, 10: 15628554, 27307: 15824902, 12: 15628554, 27311: 15824998, 27282: 15817867, 27283: 15817915}
2019-05-17 19:07:24,969 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-17 19:07:24,969 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-17 19:07:24,969 | INFO | retrieve | pilot.control.job | has_job_completed | job 4344409192 has completed
2019-05-17 19:07:24,969 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-05-17 19:07:24,969 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-05-17 19:07:35,019 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-05-17 19:07:35,019 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/boinc9/BOINC_TEST/slots/0
2019-05-17 19:07:35,049 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (102196314112 B)
2019-05-17 19:07:35,050 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-05-17 19:07:35,059 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-05-17 19:07:35,059 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-05-17 19:07:35,111 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-05-17 19:07:35,207 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-05-17 19:07:35,295 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-05-17 19:07:35,303 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-05-17 19:07:35,395 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-05-17 19:07:35,593 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-05-17 19:07:35,855 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-05-17 19:07:36,067 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-05-17 19:07:36,067 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-05-17 19:07:37,038 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-05-17 19:07:37,038 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-05-17 19:07:38,243 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-05-17 19:07:58,143 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-05-17 19:07:58,143 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-05-17 19:07:58,144 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-05-17 19:07:58,144 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-05-17 19:07:58,144 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=27412.51s
KernelTime=664.87s
UserTime=24051.49s
CPUUsage=90%
MaxResidentMemory=2048564kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=6037
MinorPageFaults=7489497
Swaps=0
ForcedSwitches=2541096
WaitSwitches=16139502
Inputs=5595374
Outputs=5752
SocketReceived=0
SocketSent=0
Signals=0
nodename=computezrmle@black
exitcode=0
******************************WorkDir***********************
total 383076
drwxrwx--x 7 boinc9 boinc 720 May 17 21:07 .
drwxr-x--- 3 boinc9 boinc 60 May 17 13:31 ..
drwx------ 2 boinc9 boinc 40 May 17 13:31 .alrb
-rw------- 1 boinc9 boinc 551 May 17 13:31 .asetup
-rw------- 1 boinc9 boinc 2987 May 17 13:32 .asetup.save
-rw------- 1 boinc9 boinc 497 May 17 21:07 16KKDmTqVkunShfckohDCDFpABFKDmABFKDmV3iMDmABFKDmXyEV3n.diag
drwxr-xr-x 3 boinc9 boinc 60 May 17 13:31 APPS
-rw-r--r-- 1 boinc9 boinc 376635482 May 17 13:31 EVNT.17323873._000995.pool.root.1
drwxrwx--- 2 boinc9 boinc 460 May 17 21:07 PanDA_Pilot-4344409192
-rw-r--r-- 1 boinc9 boinc 786 May 17 13:31 RTE.tar.gz
-rw------- 1 boinc9 boinc 7245969 May 17 13:31 agis_ddmendpoints.json
-rw------- 1 boinc9 boinc 4877338 May 17 13:31 agis_schedconf.cvmfs.json
-rw-r--r-- 1 boinc9 boinc 0 May 17 13:31 boinc_lockfile
-rw-r--r-- 1 boinc9 boinc 8192 May 17 13:31 boinc_mmap_file
-rw------- 1 boinc9 boinc 45351 May 17 21:07 heartbeat.json
-rw-r--r-- 1 boinc9 boinc 6381 May 17 13:31 init_data.xml
-rw-r--r-- 1 boinc9 boinc 245109 May 17 13:31 input.tar.gz
-rw-r--r-- 1 boinc9 boinc 112 May 17 13:31 job.xml
-rw------- 1 boinc9 boinc 1276661 May 17 21:07 log.17905843._050718.job.log.1
-rw------- 1 boinc9 boinc 283250 May 17 21:07 log.17905843._050718.job.log.tgz.1
-rw------- 1 boinc9 boinc 303 May 17 21:06 memory_monitor_summary.json
-rw------- 1 boinc9 boinc 391 May 17 21:07 output.list
-rw------- 1 boinc9 boinc 2884 May 13 21:31 pandaJobData.out
drwx------ 3 boinc9 boinc 240 May 6 13:40 pilot2
-rw-r--r-- 1 boinc9 boinc 236270 May 13 16:43 pilot2.tar.gz
-rw------- 1 boinc9 boinc 1263659 May 17 21:07 pilotlog.txt
-rw-r--r-- 1 boinc9 boinc 4444 May 13 21:31 queuedata.json
-rwxr-xr-x 1 boinc9 boinc 8512 May 17 13:31 run_atlas
-rwx------ 1 boinc9 boinc 14490 May 13 21:31 runpilot2-wrapper.sh
-rw-r--r-- 1 boinc9 boinc 692 May 17 21:07 runtime_log
-rw-r--r-- 1 boinc9 boinc 8048 May 17 21:07 runtime_log.err
-rw------- 1 boinc9 boinc 238 May 17 13:31 setup.sh.local
drwxrwx--x 2 boinc9 boinc 160 May 17 21:07 shared
-rw-r--r-- 1 boinc9 boinc 8714 May 17 13:31 start_atlas.sh
-rw-r--r-- 1 boinc9 boinc 17299 May 17 21:07 stderr.txt
-rw-r--r-- 1 boinc9 boinc 107 May 17 13:31 wrapper_26015_x86_64-pc-linux-gnu
running start_atlas return value is 0
Parent exit 0
child process exit 0
21:07:59 (34758): run_atlas exited; CPU time 24052.078913
21:07:59 (34758): called boinc_finish(0)
</stderr_txt>
]]>
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