| Name | zLrLDmNTjkunShfckohDCDFpABFKDmABFKDmvc4MDmABFKDmdMzjXn_3 |
| Workunit | 1896672 |
| Created | 18 May 2019, 2:17:05 UTC |
| Sent | 18 May 2019, 4:25:11 UTC |
| Report deadline | 25 May 2019, 4:25:11 UTC |
| Received | 18 May 2019, 14:52:37 UTC |
| Server state | Over |
| Outcome | Validate error |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 27 min 26 sec |
| CPU time | 10 hours 44 min 59 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.45 GB |
| Peak disk usage | 843.90 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
09:19:00 (7629): wrapper (7.7.26015): starting
09:19:00 (7629): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/0/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/0/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/0/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/0/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.17905780._051444.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-05-18 18:01:34,306 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/0/PanDA_Pilot-4343820581/memory_monitor_summary.json
2019-05-18 18:01:34,307 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2114476, 'maxSwap': 0, 'totRCHAR': 1652224760, 'totRBYTES': 1645117440, 'totWCHAR': 119604240, 'totWBYTES': 129916928, 'maxVMEM': 3232784, 'maxPSS': 2105976}, 'Avg': {'avgRSS': 2066052, 'rateWCHAR': 3117, 'avgVMEM': 3167319, 'avgPSS': 2057266, 'rateRCHAR': 43068, 'avgSwap': 0, 'rateRBYTES': 42882, 'rateWBYTES': 3386}}
2019-05-18 18:01:34,307 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-18 18:01:34,307 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-18 18:01:34,307 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-18 18:01:34,308 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-18 18:01:34,308 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-05-18 18:01:34,308 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 17 s
2019-05-18 18:01:34,308 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-18 18:01:34,308 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 17 s
2019-05-18 18:01:34,308 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 9 s
2019-05-18 18:01:34,308 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38436 s
2019-05-18 18:01:34,308 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 28 s
2019-05-18 18:01:34,308 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-18 18:01:34,309 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-18 18:01:34,309 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/0/PanDA_Pilot-4343820581/pandatracerlog.txt (ignoring)
2019-05-18 18:01:34,310 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/0/PanDA_Pilot-4343820581/pilotlog.txt
2019-05-18 18:01:34,433 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-05-18 18:01:34,503 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-05-18 18:01:34,303 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 4.56 B/s (using 619 data points, chi2=22933210671.944942)
2019-05-18 18:01:34,304 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=4.56"
2019-05-18 18:01:34,305 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-18 18:01:34,306 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/0/PanDA_Pilot-4343820581/memory_monitor_summary.json
2019-05-18 18:01:34,307 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2114476, 'maxSwap': 0, 'totRCHAR': 1652224760, 'totRBYTES': 1645117440, 'totWCHAR': 119604240, 'totWBYTES': 129916928, 'maxVMEM': 3232784, 'maxPSS': 2105976}, 'Avg': {'avgRSS': 2066052, 'rateWCHAR': 3117, 'avgVMEM': 3167319, 'avgPSS': 2057266, 'rateRCHAR': 43068, 'avgSwap': 0, 'rateRBYTES': 42882, 'rateWBYTES': 3386}}
2019-05-18 18:01:34,307 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-18 18:01:34,307 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-18 18:01:34,307 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-18 18:01:34,308 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-18 18:01:34,308 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-05-18 18:01:34,308 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 17 s
2019-05-18 18:01:34,308 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-18 18:01:34,308 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 17 s
2019-05-18 18:01:34,308 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 9 s
2019-05-18 18:01:34,308 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38436 s
2019-05-18 18:01:34,308 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 28 s
2019-05-18 18:01:34,308 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-18 18:01:34,309 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-18 18:01:34,309 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/0/PanDA_Pilot-4343820581/pandatracerlog.txt (ignoring)
2019-05-18 18:01:34,310 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/0/PanDA_Pilot-4343820581/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-05-18 18:01:34,507 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/0/heartbeat.json
2019-05-18 18:01:34,508 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4343820581 was dequeued from the monitored payloads queue
2019-05-18 18:01:35,340 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-18 18:01:35,341 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-05-18 18:01:35,341 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-18 18:01:35,341 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4343820581
2019-05-18 18:01:35,342 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 17905780
2019-05-18 18:01:35,342 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-05-18 18:01:35,342 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-05-18 18:01:35,342 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-05-18 18:01:35,342 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-05-18 18:01:35,342 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-05-18 18:01:35,342 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-05-18 18:01:35,342 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-05-18 18:01:35,343 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-05-18 18:01:35,343 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 38432 s
2019-05-18 18:01:35,343 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-05-18 18:01:35,343 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-05-18 18:01:35,343 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 13899
2019-05-18 18:01:35,343 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-05-18 18:01:35,343 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-05-18 18:01:35,344 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-05-18 18:01:35,344 | INFO | retrieve | pilot.util.auxiliary | make_job_report | sizes: {0: 15627241, 1: 15627617, 38434: 15869435, 38435: 15869483, 5: 15627617, 38465: 15876514, 10: 15627641, 13: 15627740, 15: 15627740, 38467: 15876562, 38464: 15876466}
2019-05-18 18:01:35,344 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-18 18:01:35,344 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-18 18:01:35,344 | INFO | retrieve | pilot.control.job | has_job_completed | job 4343820581 has completed
2019-05-18 18:01:35,344 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-05-18 18:01:35,344 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-05-18 18:01:41,139 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s)
2019-05-18 18:01:45,373 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-05-18 18:01:45,373 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/0
2019-05-18 18:01:45,403 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14305722368 B)
2019-05-18 18:01:45,403 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-05-18 18:01:45,431 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-05-18 18:01:45,458 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-05-18 18:01:45,624 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-05-18 18:01:45,932 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-05-18 18:01:45,968 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-05-18 18:01:45,968 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-05-18 18:01:46,073 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-05-18 18:01:46,322 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-05-18 18:01:46,424 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-05-18 18:01:47,103 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-05-18 18:01:47,107 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-05-18 18:01:47,458 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-05-18 18:01:47,458 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-05-18 18:01:49,209 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-05-18 18:02:42,427 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 123 s)
2019-05-18 18:02:42,428 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-05-18 18:02:42,431 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-05-18 18:02:42,432 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-05-18 18:02:42,432 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=38612.55s
KernelTime=857.47s
UserTime=38431.72s
CPUUsage=101%
MaxResidentMemory=2012872kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9701
MinorPageFaults=15811105
Swaps=0
ForcedSwitches=396105
WaitSwitches=19077797
Inputs=3372536
Outputs=308336
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 384140
drwxrwx--x. 7 root root 4096 18. Mai 20:02 .
drwxr-x--x. 3 root root 4096 18. Mai 09:18 ..
-rw-------. 1 root root 7245969 18. Mai 09:19 agis_ddmendpoints.json
-rw-------. 1 root root 4884028 18. Mai 09:19 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 18. Mai 09:19 .alrb
drwxr-xr-x. 3 root root 4096 18. Mai 09:19 APPS
-rw-------. 1 root root 549 18. Mai 09:19 .asetup
-rw-------. 1 root root 2985 18. Mai 09:20 .asetup.save
-rw-r--r--. 1 root root 0 18. Mai 09:19 boinc_lockfile
-rw-r--r--. 1 root root 8192 18. Mai 20:02 boinc_mmap_file
-rw-r--r--. 1 root root 537 18. Mai 20:01 boinc_task_state.xml
-rw-r--r--. 1 root root 376631601 18. Mai 09:19 EVNT.17323857._000893.pool.root.1
-rw-------. 1 root root 57536 18. Mai 20:01 heartbeat.json
-rw-r--r--. 1 root root 5474 18. Mai 19:44 init_data.xml
-rw-r--r--. 1 root root 245120 18. Mai 09:19 input.tar.gz
-rw-r--r--. 1 root root 112 18. Mai 09:18 job.xml
-rw-------. 1 root root 1771368 18. Mai 20:02 log.17905780._051444.job.log.1
-rw-------. 1 root root 323595 18. Mai 20:01 log.17905780._051444.job.log.tgz.1
-rw-------. 1 root root 306 18. Mai 20:00 memory_monitor_summary.json
-rw-------. 1 root root 391 18. Mai 20:02 output.list
-rw-------. 1 4871 1028 2887 14. Mai 12:04 pandaJobData.out
drwxrwx---. 2 root root 4096 18. Mai 20:01 PanDA_Pilot-4343820581
drwxr-xr-x. 3 501 games 4096 6. Mai 13:40 pilot2
-rw-r--r--. 1 root root 236270 13. Mai 16:43 pilot2.tar.gz
-rw-------. 1 root root 1756291 18. Mai 20:02 pilotlog.txt
-rw-r--r--. 1 root root 4444 14. Mai 12:04 queuedata.json
-rw-r--r--. 1 root root 786 18. Mai 09:19 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 18. Mai 09:18 run_atlas
-rwx------. 1 4871 1028 14490 14. Mai 12:04 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 18. Mai 20:02 runtime_log
-rw-r--r--. 1 root root 7327 18. Mai 20:02 runtime_log.err
drwxrwx--x. 2 root root 4096 18. Mai 20:02 shared
-rw-r--r--. 1 root root 8714 18. Mai 09:19 start_atlas.sh
-rw-r--r--. 1 root root 16874 18. Mai 20:02 stderr.txt
-rw-r--r--. 1 root root 107 18. Mai 09:18 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 18. Mai 20:02 wrapper_checkpoint.txt
-rw-------. 1 root root 493 18. Mai 20:02 zLrLDmNTjkunShfckohDCDFpABFKDmABFKDmvc4MDmABFKDmdMzjXn.diag
running start_atlas return value is 0
Parent exit 0
child process exit 0
20:02:43 (7629): run_atlas exited; CPU time 38432.793327
20:02:43 (7629): called boinc_finish(0)
</stderr_txt>
]]>
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