| Name | dONODmmDmkunShfckohDCDFpABFKDmABFKDmqx8MDmABFKDmk59kTo_3 |
| Workunit | 1896722 |
| Created | 19 May 2019, 13:39:57 UTC |
| Sent | 19 May 2019, 13:43:12 UTC |
| Report deadline | 26 May 2019, 13:43:12 UTC |
| Received | 19 May 2019, 16:15:50 UTC |
| Server state | Over |
| Outcome | Validate error |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3529 |
| Run time | 2 hours 27 min 11 sec |
| CPU time | 9 hours 8 min 1 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 13.20 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.86 GB |
| Peak swap size | 2.43 GB |
| Peak disk usage | 844.58 MB |
Stderr output
<core_client_version>7.15.0</core_client_version>
<![CDATA[
<stderr_txt>
15:46:16 (864): wrapper (7.7.26015): starting
15:46:16 (864): wrapper: running run_atlas (--nthreads 4)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '4']
THREADS=4
Checking for CVMFS
CVMFS is installed
OS:cat: /etc/redhat-release: No such file or directory
This is not SLC6, need to run with Singularity....
Checking Singularity...
Singularity is installed
copy /home/boinc/slots/0/shared/ATLAS.root_0
copy /home/boinc/slots/0/shared/RTE.tar.gz
copy /home/boinc/slots/0/shared/input.tar.gz
copy /home/boinc/slots/0/shared/start_atlas.sh
export ATHENA_PROC_NUMBER=4;start atlas job with
Testing the function of Singularity...
check singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img hostname
Singularity Works...
cmd = singularity exec --pwd /home/boinc/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.17988802._017226.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-05-19 16:13:03,719 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-19 16:13:03,720 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/boinc/slots/0/PanDA_Pilot-4344015041/memory_monitor_summary.json
2019-05-19 16:13:03,721 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 9792260, 'maxSwap': 0, 'totRCHAR': 2277835076, 'totRBYTES': 3507687424, 'totWCHAR': 123657772, 'totWBYTES': 122216448, 'maxVMEM': 13292472, 'maxPSS': 2572228}, 'Avg': {'avgRSS': 9002974, 'rateWCHAR': 14279, 'avgVMEM': 12577432, 'avgPSS': 2424356, 'rateRCHAR': 263029, 'avgSwap': 0, 'rateRBYTES': 405044, 'rateWBYTES': 14112}}
2019-05-19 16:13:03,721 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-19 16:13:03,722 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-19 16:13:03,722 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-19 16:13:03,722 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-19 16:13:03,722 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 6 s
2019-05-19 16:13:03,722 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 15 s
2019-05-19 16:13:03,722 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-19 16:13:03,722 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 15 s
2019-05-19 16:13:03,723 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 6 s
2019-05-19 16:13:03,723 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 8716 s
2019-05-19 16:13:03,723 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 23 s
2019-05-19 16:13:03,723 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-19 16:13:03,723 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-19 16:13:03,723 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /home/boinc/slots/0/PanDA_Pilot-4344015041/pandatracerlog.txt (ignoring)
2019-05-19 16:13:03,724 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-4344015041/pilotlog.txt
2019-05-19 16:13:03,758 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-05-19 16:13:03,759 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-05-19 16:13:03,719 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 8.18 B/s (using 136 data points, chi2=-12592421675.302425)
2019-05-19 16:13:03,719 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=4 leak=8.18"
2019-05-19 16:13:03,719 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-19 16:13:03,720 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/boinc/slots/0/PanDA_Pilot-4344015041/memory_monitor_summary.json
2019-05-19 16:13:03,721 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 9792260, 'maxSwap': 0, 'totRCHAR': 2277835076, 'totRBYTES': 3507687424, 'totWCHAR': 123657772, 'totWBYTES': 122216448, 'maxVMEM': 13292472, 'maxPSS': 2572228}, 'Avg': {'avgRSS': 9002974, 'rateWCHAR': 14279, 'avgVMEM': 12577432, 'avgPSS': 2424356, 'rateRCHAR': 263029, 'avgSwap': 0, 'rateRBYTES': 405044, 'rateWBYTES': 14112}}
2019-05-19 16:13:03,721 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-19 16:13:03,722 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-19 16:13:03,722 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-19 16:13:03,722 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-19 16:13:03,722 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 6 s
2019-05-19 16:13:03,722 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 15 s
2019-05-19 16:13:03,722 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-19 16:13:03,722 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 15 s
2019-05-19 16:13:03,723 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 6 s
2019-05-19 16:13:03,723 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 8716 s
2019-05-19 16:13:03,723 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 23 s
2019-05-19 16:13:03,723 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-19 16:13:03,723 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-19 16:13:03,723 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /home/boinc/slots/0/PanDA_Pilot-4344015041/pandatracerlog.txt (ignoring)
2019-05-19 16:13:03,724 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-4344015041/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-05-19 16:13:03,761 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /home/boinc/slots/0/heartbeat.json
2019-05-19 16:13:03,761 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4344015041 was dequeued from the monitored payloads queue
2019-05-19 16:13:04,557 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-19 16:13:04,557 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-05-19 16:13:04,557 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-19 16:13:04,557 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4344015041
2019-05-19 16:13:04,557 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 17988802
2019-05-19 16:13:04,557 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-05-19 16:13:04,558 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-05-19 16:13:04,558 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-05-19 16:13:04,558 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-05-19 16:13:04,558 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-05-19 16:13:04,558 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-05-19 16:13:04,558 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-05-19 16:13:04,558 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-05-19 16:13:04,558 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 32823 s
2019-05-19 16:13:04,559 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-05-19 16:13:04,559 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-05-19 16:13:04,559 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 7444
2019-05-19 16:13:04,559 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-05-19 16:13:04,559 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4
2019-05-19 16:13:04,559 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-05-19 16:13:04,559 | INFO | retrieve | pilot.util.auxiliary | make_job_report | sizes: {0: 15627229, 1: 15627605, 2: 15627605, 3: 15627629, 5: 15627653, 7: 15627677, 8744: 15819243, 8745: 15819291, 10: 15628544, 12: 15628544, 8720: 15812328, 8746: 15819339}
2019-05-19 16:13:04,559 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-19 16:13:04,559 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-19 16:13:04,560 | INFO | retrieve | pilot.control.job | has_job_completed | job 4344015041 has completed
2019-05-19 16:13:04,560 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-05-19 16:13:04,560 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-05-19 16:13:14,603 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-05-19 16:13:14,604 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/boinc/slots/0
2019-05-19 16:13:14,621 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (886949543936 B)
2019-05-19 16:13:14,621 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-05-19 16:13:14,713 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-05-19 16:13:14,714 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-05-19 16:13:14,828 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-05-19 16:13:14,905 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-05-19 16:13:14,938 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-05-19 16:13:15,232 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-05-19 16:13:15,359 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-05-19 16:13:15,609 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-05-19 16:13:15,714 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-05-19 16:13:15,714 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-05-19 16:13:16,509 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-05-19 16:13:16,522 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-05-19 16:13:16,522 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-05-19 16:13:19,510 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-05-19 16:13:25,022 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s)
2019-05-19 16:13:25,023 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-05-19 16:13:25,023 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-05-19 16:13:25,023 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-05-19 16:13:25,023 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=8817.17s
KernelTime=94.67s
UserTime=32880.59s
CPUUsage=373%
MaxResidentMemory=2035180kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=20314
MinorPageFaults=7403343
Swaps=0
ForcedSwitches=6205931
WaitSwitches=8239201
Inputs=7047858
Outputs=488072
SocketReceived=0
SocketSent=0
Signals=0
nodename=gyllic@boinc-debian-rechner
exitcode=0
******************************WorkDir***********************
total 384236
drwxrwx--x 7 boinc boinc 4096 May 19 18:13 .
drwxrwx--x 3 boinc boinc 4096 May 19 15:46 ..
drwx------ 2 boinc boinc 4096 May 19 15:46 .alrb
-rw------- 1 boinc boinc 539 May 19 15:46 .asetup
-rw------- 1 boinc boinc 2975 May 19 15:47 .asetup.save
drwxr-xr-x 3 boinc boinc 4096 May 19 15:46 APPS
-rw-r--r-- 1 boinc boinc 378816248 May 19 15:46 EVNT.17323894._000343.pool.root.1
drwxrwx--- 3 boinc boinc 4096 May 19 18:13 PanDA_Pilot-4344015041
-rw-r--r-- 1 boinc boinc 786 May 19 15:46 RTE.tar.gz
-rw------- 1 boinc boinc 7245969 May 19 15:46 agis_ddmendpoints.json
-rw------- 1 boinc boinc 4884187 May 19 15:46 agis_schedconf.cvmfs.json
-rw-r--r-- 1 boinc boinc 0 May 19 15:46 boinc_lockfile
-rw-r--r-- 1 boinc boinc 8192 May 19 18:13 boinc_mmap_file
-rw-r--r-- 1 boinc boinc 536 May 19 18:06 boinc_task_state.xml
-rw------- 1 boinc boinc 507 May 19 18:13 dONODmmDmkunShfckohDCDFpABFKDmABFKDmqx8MDmABFKDmk59kTo.diag
-rw------- 1 boinc boinc 43541 May 19 18:13 heartbeat.json
-rw-r--r-- 1 boinc boinc 5933 May 19 15:46 init_data.xml
-rw-r--r-- 1 boinc boinc 245113 May 19 15:46 input.tar.gz
-rw-r--r-- 1 boinc boinc 112 May 19 15:46 job.xml
-rw------- 1 boinc boinc 513304 May 19 18:13 log.17988802._017226.job.log.1
-rw------- 1 boinc boinc 762348 May 19 18:12 log.17988802._017226.job.log.tgz.1
-rw------- 1 boinc boinc 312 May 19 18:12 memory_monitor_summary.json
-rw------- 1 boinc boinc 391 May 19 18:13 output.list
-rw------- 1 boinc boinc 2885 May 14 15:00 pandaJobData.out
drwx------ 3 boinc boinc 4096 May 6 13:40 pilot2
-rw-r--r-- 1 boinc boinc 236270 May 13 16:43 pilot2.tar.gz
-rw------- 1 boinc boinc 500335 May 19 18:13 pilotlog.txt
-rw-r--r-- 1 boinc boinc 4444 May 14 15:00 queuedata.json
-rwxr-xr-x 1 boinc boinc 8512 May 19 15:46 run_atlas
-rwx------ 1 boinc boinc 14490 May 14 15:00 runpilot2-wrapper.sh
-rw-r--r-- 1 boinc boinc 692 May 19 18:13 runtime_log
-rw-r--r-- 1 boinc boinc 7786 May 19 18:13 runtime_log.err
-rw------- 1 boinc boinc 242 May 19 15:46 setup.sh.local
drwxrwx--x 2 boinc boinc 4096 May 19 18:13 shared
-rw-r--r-- 1 boinc boinc 8743 May 19 15:46 start_atlas.sh
-rw-r--r-- 1 boinc boinc 17170 May 19 18:13 stderr.txt
-rw-r--r-- 1 boinc boinc 107 May 19 15:46 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r-- 1 boinc boinc 27 May 19 18:13 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
18:13:26 (864): run_atlas exited; CPU time 32881.016000
18:13:26 (864): called boinc_finish(0)
</stderr_txt>
]]>
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