| Name | qqzNDml3smunShfckohDCDFpABFKDmABFKDm9NbZDmABFKDmm024Dm_1 |
| Workunit | 1898182 |
| Created | 20 May 2019, 9:59:43 UTC |
| Sent | 20 May 2019, 13:18:19 UTC |
| Report deadline | 27 May 2019, 13:18:19 UTC |
| Received | 20 May 2019, 17:10:39 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3529 |
| Run time | 2 hours 33 min 26 sec |
| CPU time | 9 hours 25 min 28 sec |
| Validate state | Valid |
| Credit | 281.25 |
| Device peak FLOPS | 13.20 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.86 GB |
| Peak swap size | 2.43 GB |
| Peak disk usage | 844.34 MB |
Stderr output
<core_client_version>7.15.0</core_client_version>
<![CDATA[
<stderr_txt>
16:34:51 (9975): wrapper (7.7.26015): starting
16:34:51 (9975): wrapper: running run_atlas (--nthreads 4)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '4']
THREADS=4
Checking for CVMFS
CVMFS is installed
OS:cat: /etc/redhat-release: No such file or directory
This is not SLC6, need to run with Singularity....
Checking Singularity...
Singularity is installed
copy /home/boinc/slots/0/shared/ATLAS.root_0
copy /home/boinc/slots/0/shared/RTE.tar.gz
copy /home/boinc/slots/0/shared/input.tar.gz
copy /home/boinc/slots/0/shared/start_atlas.sh
export ATHENA_PROC_NUMBER=4;start atlas job with
Testing the function of Singularity...
check singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img hostname
Singularity Works...
cmd = singularity exec --pwd /home/boinc/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.17988785._039830.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-05-20 17:07:13,634 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-20 17:07:13,636 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/boinc/slots/0/PanDA_Pilot-4350992552/memory_monitor_summary.json
2019-05-20 17:07:13,638 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 9793444, 'maxSwap': 0, 'totRCHAR': 2315372336, 'totRBYTES': 3761807360, 'totWCHAR': 128455979, 'totWBYTES': 127086592, 'maxVMEM': 13294404, 'maxPSS': 2587292}, 'Avg': {'avgRSS': 8951441, 'rateWCHAR': 14257, 'avgVMEM': 12498828, 'avgPSS': 2422463, 'rateRCHAR': 256978, 'avgSwap': 0, 'rateRBYTES': 417514, 'rateWBYTES': 14105}}
2019-05-20 17:07:13,638 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-20 17:07:13,638 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-20 17:07:13,638 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-20 17:07:13,639 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-20 17:07:13,639 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 6 s
2019-05-20 17:07:13,639 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 15 s
2019-05-20 17:07:13,639 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-20 17:07:13,639 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 15 s
2019-05-20 17:07:13,640 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 6 s
2019-05-20 17:07:13,640 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 9046 s
2019-05-20 17:07:13,640 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 23 s
2019-05-20 17:07:13,640 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-20 17:07:13,640 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-20 17:07:13,640 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /home/boinc/slots/0/PanDA_Pilot-4350992552/pandatracerlog.txt (ignoring)
2019-05-20 17:07:13,641 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-4350992552/pilotlog.txt
2019-05-20 17:07:13,688 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-05-20 17:07:13,689 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-05-20 17:07:13,634 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 18.17 B/s (using 141 data points, chi2=-11506916673.186972)
2019-05-20 17:07:13,634 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=4 leak=18.17"
2019-05-20 17:07:13,634 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-20 17:07:13,636 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/boinc/slots/0/PanDA_Pilot-4350992552/memory_monitor_summary.json
2019-05-20 17:07:13,638 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 9793444, 'maxSwap': 0, 'totRCHAR': 2315372336, 'totRBYTES': 3761807360, 'totWCHAR': 128455979, 'totWBYTES': 127086592, 'maxVMEM': 13294404, 'maxPSS': 2587292}, 'Avg': {'avgRSS': 8951441, 'rateWCHAR': 14257, 'avgVMEM': 12498828, 'avgPSS': 2422463, 'rateRCHAR': 256978, 'avgSwap': 0, 'rateRBYTES': 417514, 'rateWBYTES': 14105}}
2019-05-20 17:07:13,638 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-20 17:07:13,638 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-20 17:07:13,638 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-20 17:07:13,639 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-20 17:07:13,639 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 6 s
2019-05-20 17:07:13,639 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 15 s
2019-05-20 17:07:13,639 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-20 17:07:13,639 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 15 s
2019-05-20 17:07:13,640 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 6 s
2019-05-20 17:07:13,640 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 9046 s
2019-05-20 17:07:13,640 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 23 s
2019-05-20 17:07:13,640 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-20 17:07:13,640 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-20 17:07:13,640 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /home/boinc/slots/0/PanDA_Pilot-4350992552/pandatracerlog.txt (ignoring)
2019-05-20 17:07:13,641 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-4350992552/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-05-20 17:07:13,690 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /home/boinc/slots/0/heartbeat.json
2019-05-20 17:07:13,690 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4350992552 was dequeued from the monitored payloads queue
2019-05-20 17:07:14,373 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-05-20 17:07:14,499 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-20 17:07:14,500 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-05-20 17:07:14,500 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-20 17:07:14,500 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4350992552
2019-05-20 17:07:14,500 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 17988785
2019-05-20 17:07:14,500 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-05-20 17:07:14,500 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-05-20 17:07:14,500 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-05-20 17:07:14,500 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-05-20 17:07:14,501 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-05-20 17:07:14,501 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-05-20 17:07:14,501 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-05-20 17:07:14,501 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-05-20 17:07:14,501 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 33844 s
2019-05-20 17:07:14,501 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-05-20 17:07:14,501 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-05-20 17:07:14,501 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 16528
2019-05-20 17:07:14,501 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-05-20 17:07:14,502 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4
2019-05-20 17:07:14,502 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-05-20 17:07:14,502 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-20 17:07:14,502 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-20 17:07:14,502 | INFO | retrieve | pilot.control.job | has_job_completed | job 4350992552 has completed
2019-05-20 17:07:14,502 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-05-20 17:07:14,502 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-05-20 17:07:24,541 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-05-20 17:07:24,542 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/boinc/slots/0
2019-05-20 17:07:24,559 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (885000241152 B)
2019-05-20 17:07:24,559 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-05-20 17:07:24,561 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-05-20 17:07:24,590 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-05-20 17:07:24,598 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-05-20 17:07:24,598 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-05-20 17:07:24,825 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-05-20 17:07:24,830 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-05-20 17:07:24,866 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-05-20 17:07:24,900 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-05-20 17:07:25,088 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-05-20 17:07:25,599 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-05-20 17:07:25,599 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-05-20 17:07:26,498 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-05-20 17:07:26,498 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-05-20 17:07:27,831 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-05-20 17:08:15,466 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 122 s)
2019-05-20 17:08:15,466 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-05-20 17:08:15,467 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-05-20 17:08:15,467 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-05-20 17:08:15,467 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=9188.53s
KernelTime=116.61s
UserTime=33928.26s
CPUUsage=370%
MaxResidentMemory=1990056kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=22450
MinorPageFaults=7501395
Swaps=0
ForcedSwitches=6434079
WaitSwitches=8535641
Inputs=7528466
Outputs=507064
SocketReceived=0
SocketSent=0
Signals=0
nodename=gyllic@boinc-debian-rechner
exitcode=0
******************************WorkDir***********************
total 381212
drwxrwx--x 7 boinc boinc 4096 May 20 19:08 .
drwxrwx--x 4 boinc boinc 4096 May 19 20:53 ..
drwx------ 2 boinc boinc 4096 May 20 16:35 .alrb
-rw------- 1 boinc boinc 539 May 20 16:35 .asetup
-rw------- 1 boinc boinc 2975 May 20 16:35 .asetup.save
drwxr-xr-x 3 boinc boinc 4096 May 20 16:35 APPS
-rw-r--r-- 1 boinc boinc 375630792 May 20 16:35 EVNT.17323890._000808.pool.root.1
drwxrwx--- 3 boinc boinc 4096 May 20 19:07 PanDA_Pilot-4350992552
-rw-r--r-- 1 boinc boinc 786 May 20 16:35 RTE.tar.gz
-rw------- 1 boinc boinc 7252764 May 20 16:35 agis_ddmendpoints.json
-rw------- 1 boinc boinc 4884169 May 20 16:35 agis_schedconf.cvmfs.json
-rw-r--r-- 1 boinc boinc 0 May 20 16:34 boinc_lockfile
-rw-r--r-- 1 boinc boinc 8192 May 20 19:07 boinc_mmap_file
-rw-r--r-- 1 boinc boinc 536 May 20 19:00 boinc_task_state.xml
-rw------- 1 boinc boinc 57670 May 20 19:07 heartbeat.json
-rw-r--r-- 1 boinc boinc 5933 May 20 16:34 init_data.xml
-rw-r--r-- 1 boinc boinc 247779 May 20 16:35 input.tar.gz
-rw-r--r-- 1 boinc boinc 112 May 20 16:34 job.xml
-rw------- 1 boinc boinc 542052 May 20 19:08 log.17988785._039830.job.log.1
-rw------- 1 boinc boinc 766224 May 20 19:06 log.17988785._039830.job.log.tgz.1
-rw------- 1 boinc boinc 312 May 20 19:06 memory_monitor_summary.json
-rw------- 1 boinc boinc 391 May 20 19:08 output.list
-rw------- 1 boinc boinc 2886 May 20 10:42 pandaJobData.out
drwx------ 3 boinc boinc 4096 May 20 09:54 pilot2
-rw-r--r-- 1 boinc boinc 238821 May 20 10:42 pilot2.tar.gz
-rw------- 1 boinc boinc 529083 May 20 19:08 pilotlog.txt
-rw------- 1 boinc boinc 508 May 20 19:08 qqzNDml3smunShfckohDCDFpABFKDmABFKDm9NbZDmABFKDmm024Dm.diag
-rw-r--r-- 1 boinc boinc 4444 May 20 10:42 queuedata.json
-rwxr-xr-x 1 boinc boinc 8512 May 20 16:34 run_atlas
-rwx------ 1 boinc boinc 14490 May 20 10:42 runpilot2-wrapper.sh
-rw-r--r-- 1 boinc boinc 692 May 20 19:08 runtime_log
-rw-r--r-- 1 boinc boinc 7786 May 20 19:08 runtime_log.err
-rw------- 1 boinc boinc 242 May 20 16:35 setup.sh.local
drwxrwx--x 2 boinc boinc 4096 May 20 19:08 shared
-rw-r--r-- 1 boinc boinc 8743 May 20 16:35 start_atlas.sh
-rw-r--r-- 1 boinc boinc 17058 May 20 19:08 stderr.txt
-rw-r--r-- 1 boinc boinc 107 May 20 16:34 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r-- 1 boinc boinc 27 May 20 19:07 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
19:08:16 (9975): run_atlas exited; CPU time 33928.716000
19:08:16 (9975): called boinc_finish(0)
</stderr_txt>
]]>
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