| Name | C0tKDmn3smunShfckohDCDFpABFKDmABFKDmqPbZDmABFKDmTf8Atm_1 |
| Workunit | 1898186 |
| Created | 20 May 2019, 10:19:59 UTC |
| Sent | 20 May 2019, 13:56:01 UTC |
| Report deadline | 27 May 2019, 13:56:01 UTC |
| Received | 20 May 2019, 14:11:16 UTC |
| Server state | Over |
| Outcome | Validate error |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 min 40 sec |
| CPU time | 2 min 54 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 616.34 MB |
| Peak swap size | 2.84 GB |
| Peak disk usage | 721.72 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
20:33:09 (24190): wrapper (7.7.26015): starting
20:33:09 (24190): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/1/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/1/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/1/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/1/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
*****************The last 100 lines of the pilot log******************
2019-05-20 18:43:31,489 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-20 18:43:31,490 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-20 18:43:31,491 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/1/PanDA_Pilot-4350992558/pandatracerlog.txt (ignoring)
2019-05-20 18:43:31,492 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/1/PanDA_Pilot-4350992558/pilotlog.txt
- Error messages from pilotlog.txt -
2019-05-20 18:43:09,528 | WARNING | execute_payloads | pilot.util.auxiliary | get_job_report_errors | WARNING: aborting jobReport scan: 'ERROR'
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-05-20 18:43:31,571 | WARNING | queue_monitor | pilot.control.job | add_timing_and_extracts | pilot log extracts:
- Log from pilotlog.txt -2019-05-20 18:43:31,485 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 1532.05 B/s (using 6 data points, chi2=-10648061.122898)
2019-05-20 18:43:31,485 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=1532.05"
2019-05-20 18:43:31,485 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-20 18:43:31,486 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/1/PanDA_Pilot-4350992558/memory_monitor_summary.json
2019-05-20 18:43:31,487 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 743900, 'maxSwap': 0, 'totRCHAR': 354055374, 'totRBYTES': 1272807424, 'totWCHAR': 3559074, 'totWBYTES': 901120, 'maxVMEM': 2282048, 'maxPSS': 735471}, 'Avg': {'avgRSS': 405283, 'rateWCHAR': 8257, 'avgVMEM': 1330992, 'avgPSS': 374833, 'rateRCHAR': 821474, 'avgSwap': 0, 'rateRBYTES': 2953149, 'rateWBYTES': 2090}}
2019-05-20 18:43:31,488 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-20 18:43:31,488 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-20 18:43:31,488 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-20 18:43:31,488 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-20 18:43:31,488 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-05-20 18:43:31,488 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-05-20 18:43:31,489 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-20 18:43:31,489 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-05-20 18:43:31,489 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-05-20 18:43:31,489 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 511 s
2019-05-20 18:43:31,489 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 14 s
2019-05-20 18:43:31,489 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-20 18:43:31,490 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-20 18:43:31,491 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/1/PanDA_Pilot-4350992558/pandatracerlog.txt (ignoring)
2019-05-20 18:43:31,492 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/1/PanDA_Pilot-4350992558/pilotlog.txt
- Error messages from pilotlog.txt -
2019-05-20 18:43:09,528 | WARNING | execute_payloads | pilot.util.auxiliary | get_job_report_errors | WARNING: aborting jobReport scan: 'ERROR'
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-05-20 18:43:31,571 | WARNING | queue_monitor | pilot.control.job | add_error_codes | pilotErrorCodes = [1220, 1328] (will report primary/first error code)
2019-05-20 18:43:31,571 | WARNING | queue_monitor | pilot.control.job | add_error_codes | pilotErrorDiags = ['Job failed due to unknown reason (consult log file)', 'SIGSEGV: Invalid memory reference or a segmentation fault'] (will report primary/first error diag)
2019-05-20 18:43:31,574 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/1/heartbeat.json
2019-05-20 18:43:31,576 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4350992558 was dequeued from the monitored payloads queue
2019-05-20 18:43:32,989 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-20 18:43:32,991 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-05-20 18:43:32,991 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-20 18:43:32,991 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4350992558
2019-05-20 18:43:32,991 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 17988802
2019-05-20 18:43:32,991 | INFO | retrieve | pilot.util.auxiliary | make_job_report | error 1/2: 1220: Job failed due to unknown reason (consult log file)
2019-05-20 18:43:32,992 | INFO | retrieve | pilot.util.auxiliary | make_job_report | error 2/2: 1328: SIGSEGV: Invalid memory reference or a segmentation fault
2019-05-20 18:43:32,992 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot error code: 1328
2019-05-20 18:43:32,992 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot error diag: Invalid memory reference or a segmentation fault in payload: EVNTtoHITS got a SIGSEGV signal (exit code 139) (job report)
2019-05-20 18:43:32,992 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-05-20 18:43:32,992 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: failed
2019-05-20 18:43:32,992 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 65
2019-05-20 18:43:32,992 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-05-20 18:43:32,992 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-05-20 18:43:32,993 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 65
2019-05-20 18:43:32,993 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: EVNTtoHITS got a SIGSEGV signal (exit code 139)
2019-05-20 18:43:32,995 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 138 s
2019-05-20 18:43:32,995 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-05-20 18:43:32,995 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-05-20 18:43:32,995 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 30611
2019-05-20 18:43:32,995 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-05-20 18:43:32,995 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-05-20 18:43:32,995 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-05-20 18:43:32,996 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-20 18:43:32,996 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-20 18:43:32,996 | INFO | retrieve | pilot.control.job | has_job_completed | job 4350992558 has completed
2019-05-20 18:43:32,996 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-05-20 18:43:32,996 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-05-20 18:43:43,031 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-05-20 18:43:43,033 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/1
2019-05-20 18:43:43,055 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14022606848 B)
2019-05-20 18:43:43,056 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-05-20 18:43:43,062 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-05-20 18:43:43,062 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-05-20 18:43:43,070 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-05-20 18:43:43,455 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-05-20 18:43:43,571 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-05-20 18:43:43,644 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-05-20 18:43:43,748 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-05-20 18:43:43,998 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-05-20 18:43:44,002 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-05-20 18:43:44,081 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-05-20 18:43:44,083 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-05-20 18:43:44,522 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-05-20 18:43:44,523 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-05-20 18:43:46,206 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-05-20 18:43:46,821 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-05-20 18:43:46,822 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-05-20 18:43:46,823 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-05-20 18:43:46,824 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-05-20 18:43:46,824 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=622.82s
KernelTime=79.07s
UserTime=173.38s
CPUUsage=40%
MaxResidentMemory=631164kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=8351
MinorPageFaults=3548404
Swaps=0
ForcedSwitches=8342
WaitSwitches=1332463
Inputs=2554128
Outputs=31792
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 375152
drwxrwx--x. 7 root root 4096 20. Mai 20:43 .
drwxr-x--x. 4 root root 4096 20. Mai 20:33 ..
-rw-------. 1 root root 7245969 20. Mai 20:33 agis_ddmendpoints.json
-rw-------. 1 root root 4883948 20. Mai 20:33 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 20. Mai 20:33 .alrb
drwxr-xr-x. 3 root root 4096 20. Mai 20:33 APPS
-rw-------. 1 root root 549 20. Mai 20:33 .asetup
-rw-------. 1 root root 2985 20. Mai 20:34 .asetup.save
-rw-r--r--. 1 root root 0 20. Mai 20:33 boinc_lockfile
-rw-r--r--. 1 root root 8192 20. Mai 20:43 boinc_mmap_file
-rw-r--r--. 1 root root 532 20. Mai 20:43 boinc_task_state.xml
-rw-------. 1 root root 481 20. Mai 20:43 C0tKDmn3smunShfckohDCDFpABFKDmABFKDmqPbZDmABFKDmTf8Atm.diag
-rw-r--r--. 1 root root 371039524 20. Mai 20:33 EVNT.17323894._001091.pool.root.1
-rw-------. 1 root root 7183 20. Mai 20:43 heartbeat.json
-rw-r--r--. 1 root root 5466 20. Mai 20:33 init_data.xml
-rw-r--r--. 1 root root 247782 20. Mai 20:33 input.tar.gz
-rw-r--r--. 1 root root 112 20. Mai 20:33 job.xml
-rw-------. 1 root root 126680 20. Mai 20:43 log.17988802._052101.job.log.1
-rw-------. 1 root root 58525 20. Mai 20:43 log.17988802._052101.job.log.tgz.1
-rw-------. 1 root root 299 20. Mai 20:43 memory_monitor_summary.json
-rw-------. 1 root root 205 20. Mai 20:43 output.list
-rw-------. 1 4871 1028 2885 20. Mai 10:42 pandaJobData.out
drwxrwx---. 2 root root 4096 20. Mai 20:43 PanDA_Pilot-4350992558
drwxr-xr-x. 3 501 games 4096 20. Mai 09:54 pilot2
-rw-r--r--. 1 root root 238821 20. Mai 10:42 pilot2.tar.gz
-rw-------. 1 root root 111604 20. Mai 20:43 pilotlog.txt
-rw-r--r--. 1 root root 4444 20. Mai 10:42 queuedata.json
-rw-r--r--. 1 root root 786 20. Mai 20:33 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 20. Mai 20:33 run_atlas
-rwx------. 1 4871 1028 14490 20. Mai 10:42 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 20. Mai 20:43 runtime_log
-rw-r--r--. 1 root root 7175 20. Mai 20:43 runtime_log.err
drwxrwx--x. 2 root root 4096 20. Mai 20:43 shared
-rw-r--r--. 1 root root 8714 20. Mai 20:33 start_atlas.sh
-rw-r--r--. 1 root root 15377 20. Mai 20:43 stderr.txt
-rw-r--r--. 1 root root 107 20. Mai 20:33 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 24 20. Mai 20:43 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
20:43:47 (24190): run_atlas exited; CPU time 174.053539
20:43:47 (24190): called boinc_finish(0)
</stderr_txt>
]]>
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