| Name | 71NNDmk3smunShfckohDCDFpABFKDmABFKDmbJbZDmABFKDm1QLHtm_1 |
| Workunit | 1898178 |
| Created | 20 May 2019, 10:30:49 UTC |
| Sent | 20 May 2019, 14:11:16 UTC |
| Report deadline | 27 May 2019, 14:11:16 UTC |
| Received | 21 May 2019, 0:06:15 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 9 hours 54 min 59 sec |
| CPU time | 10 hours 11 min 56 sec |
| Validate state | Valid |
| Credit | 165.23 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.45 GB |
| Peak disk usage | 835.24 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
20:48:48 (3672): wrapper (7.7.26015): starting
20:48:48 (3672): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/2/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/2/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/2/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/2/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.17988802._044745.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-05-21 04:58:13,119 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=4.23"
2019-05-21 04:58:13,119 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-21 04:58:13,121 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/2/PanDA_Pilot-4350272759/memory_monitor_summary.json
2019-05-21 04:58:13,123 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2116316, 'maxSwap': 0, 'totRCHAR': 1599714819, 'totRBYTES': 1633869824, 'totWCHAR': 111438117, 'totWBYTES': 121491456, 'maxVMEM': 3241412, 'maxPSS': 2107870}, 'Avg': {'avgRSS': 2072509, 'rateWCHAR': 3062, 'avgVMEM': 3177761, 'avgPSS': 2063725, 'rateRCHAR': 43956, 'avgSwap': 0, 'rateRBYTES': 44895, 'rateWBYTES': 3338}}
2019-05-21 04:58:13,123 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-21 04:58:13,123 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-21 04:58:13,123 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-21 04:58:13,123 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-21 04:58:13,124 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-05-21 04:58:13,124 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-05-21 04:58:13,124 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-21 04:58:13,124 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-05-21 04:58:13,124 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-05-21 04:58:13,124 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 36459 s
2019-05-21 04:58:13,125 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-05-21 04:58:13,125 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-21 04:58:13,125 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-21 04:58:13,125 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/2/PanDA_Pilot-4350272759/pandatracerlog.txt (ignoring)
2019-05-21 04:58:13,125 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/2/PanDA_Pilot-4350272759/pilotlog.txt
2019-05-21 04:58:13,265 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-05-21 04:58:13,335 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-05-21 04:58:13,118 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 4.23 B/s (using 586 data points, chi2=-220375519679.365326)
2019-05-21 04:58:13,119 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=4.23"
2019-05-21 04:58:13,119 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-21 04:58:13,121 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/2/PanDA_Pilot-4350272759/memory_monitor_summary.json
2019-05-21 04:58:13,123 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2116316, 'maxSwap': 0, 'totRCHAR': 1599714819, 'totRBYTES': 1633869824, 'totWCHAR': 111438117, 'totWBYTES': 121491456, 'maxVMEM': 3241412, 'maxPSS': 2107870}, 'Avg': {'avgRSS': 2072509, 'rateWCHAR': 3062, 'avgVMEM': 3177761, 'avgPSS': 2063725, 'rateRCHAR': 43956, 'avgSwap': 0, 'rateRBYTES': 44895, 'rateWBYTES': 3338}}
2019-05-21 04:58:13,123 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-21 04:58:13,123 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-21 04:58:13,123 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-21 04:58:13,123 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-21 04:58:13,124 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-05-21 04:58:13,124 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-05-21 04:58:13,124 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-21 04:58:13,124 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-05-21 04:58:13,124 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-05-21 04:58:13,124 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 36459 s
2019-05-21 04:58:13,125 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-05-21 04:58:13,125 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-21 04:58:13,125 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-21 04:58:13,125 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/2/PanDA_Pilot-4350272759/pandatracerlog.txt (ignoring)
2019-05-21 04:58:13,125 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/2/PanDA_Pilot-4350272759/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-05-21 04:58:13,336 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/2/heartbeat.json
2019-05-21 04:58:13,336 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4350272759 was dequeued from the monitored payloads queue
2019-05-21 04:58:14,693 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-21 04:58:14,694 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-05-21 04:58:14,694 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-21 04:58:14,694 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4350272759
2019-05-21 04:58:14,694 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 17988802
2019-05-21 04:58:14,694 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-05-21 04:58:14,694 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-05-21 04:58:14,694 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-05-21 04:58:14,694 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-05-21 04:58:14,694 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-05-21 04:58:14,694 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-05-21 04:58:14,695 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-05-21 04:58:14,695 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-05-21 04:58:14,695 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 36491 s
2019-05-21 04:58:14,695 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-05-21 04:58:14,695 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-05-21 04:58:14,695 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 9954
2019-05-21 04:58:14,695 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-05-21 04:58:14,695 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-05-21 04:58:14,696 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-05-21 04:58:14,696 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-21 04:58:14,696 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-21 04:58:14,696 | INFO | retrieve | pilot.control.job | has_job_completed | job 4350272759 has completed
2019-05-21 04:58:14,696 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-05-21 04:58:14,696 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-05-21 04:58:24,743 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-05-21 04:58:24,744 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/2
2019-05-21 04:58:24,769 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14276362240 B)
2019-05-21 04:58:24,769 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-05-21 04:58:24,781 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-05-21 04:58:24,823 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-05-21 04:58:24,832 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-05-21 04:58:24,899 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-05-21 04:58:25,093 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-05-21 04:58:25,113 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-05-21 04:58:25,113 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-05-21 04:58:25,375 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-05-21 04:58:25,671 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-05-21 04:58:26,115 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-05-21 04:58:26,117 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-05-21 04:58:26,319 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-05-21 04:58:26,320 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-05-21 04:58:27,981 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-05-21 04:59:07,433 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s)
2019-05-21 04:59:07,433 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-05-21 04:59:07,434 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-05-21 04:59:07,435 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-05-21 04:59:07,435 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=36607.18s
KernelTime=816.54s
UserTime=36466.90s
CPUUsage=101%
MaxResidentMemory=2017244kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9577
MinorPageFaults=15215108
Swaps=0
ForcedSwitches=394257
WaitSwitches=18247431
Inputs=3335808
Outputs=295568
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 384736
drwxrwx--x. 7 root root 4096 21. Mai 06:59 .
drwxr-x--x. 5 root root 4096 20. Mai 20:48 ..
-rw-------. 1 root root 493 21. Mai 06:59 71NNDmk3smunShfckohDCDFpABFKDmABFKDmbJbZDmABFKDm1QLHtm.diag
-rw-------. 1 root root 7252764 20. Mai 20:49 agis_ddmendpoints.json
-rw-------. 1 root root 4884169 20. Mai 20:49 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 20. Mai 20:49 .alrb
drwxr-xr-x. 3 root root 4096 20. Mai 20:49 APPS
-rw-------. 1 root root 549 20. Mai 20:49 .asetup
-rw-------. 1 root root 2985 20. Mai 20:49 .asetup.save
-rw-r--r--. 1 root root 0 20. Mai 20:48 boinc_lockfile
-rw-r--r--. 1 root root 8192 21. Mai 06:58 boinc_mmap_file
-rw-r--r--. 1 root root 537 21. Mai 06:57 boinc_task_state.xml
-rw-r--r--. 1 root root 377373508 20. Mai 20:48 EVNT.17323894._000951.pool.root.1
-rw-------. 1 root root 66508 21. Mai 06:58 heartbeat.json
-rw-r--r--. 1 root root 5466 20. Mai 20:48 init_data.xml
-rw-r--r--. 1 root root 247775 20. Mai 20:48 input.tar.gz
-rw-r--r--. 1 root root 112 20. Mai 20:48 job.xml
-rw-------. 1 root root 1696912 21. Mai 06:59 log.17988802._044745.job.log.1
-rw-------. 1 root root 322139 21. Mai 06:57 log.17988802._044745.job.log.tgz.1
-rw-------. 1 root root 306 21. Mai 06:57 memory_monitor_summary.json
-rw-------. 1 root root 391 21. Mai 06:59 output.list
-rw-------. 1 4871 1028 2885 20. Mai 10:42 pandaJobData.out
drwxrwx---. 2 root root 4096 21. Mai 06:58 PanDA_Pilot-4350272759
drwxr-xr-x. 3 501 games 4096 20. Mai 09:54 pilot2
-rw-r--r--. 1 root root 238821 20. Mai 10:42 pilot2.tar.gz
-rw-------. 1 root root 1681836 21. Mai 06:59 pilotlog.txt
-rw-r--r--. 1 root root 4444 20. Mai 10:42 queuedata.json
-rw-r--r--. 1 root root 786 20. Mai 20:48 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 20. Mai 20:48 run_atlas
-rwx------. 1 4871 1028 14490 20. Mai 10:42 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 21. Mai 06:59 runtime_log
-rw-r--r--. 1 root root 7327 21. Mai 06:59 runtime_log.err
drwxrwx--x. 2 root root 4096 21. Mai 06:59 shared
-rw-r--r--. 1 root root 8714 20. Mai 20:48 start_atlas.sh
-rw-r--r--. 1 root root 16730 21. Mai 06:59 stderr.txt
-rw-r--r--. 1 root root 107 20. Mai 20:48 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 21. Mai 06:58 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
06:59:08 (3672): run_atlas exited; CPU time 36467.489098
06:59:08 (3672): called boinc_finish(0)
</stderr_txt>
]]>
©2024 CERN