| Name | 9wKMDmn3smunShfckohDCDFpABFKDmABFKDm9PbZDmABFKDmS6GEzm_3 |
| Workunit | 1898184 |
| Created | 20 May 2019, 15:32:48 UTC |
| Sent | 20 May 2019, 15:52:17 UTC |
| Report deadline | 27 May 2019, 15:52:17 UTC |
| Received | 21 May 2019, 9:13:11 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3802 |
| Run time | 12 hours 37 min 1 sec |
| CPU time | 22 hours 41 min 23 sec |
| Validate state | Valid |
| Credit | 496.13 |
| Device peak FLOPS | 4.72 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.92 GB |
| Peak swap size | 2.78 GB |
| Peak disk usage | 939.92 MB |
Stderr output
<core_client_version>7.6.33</core_client_version>
<![CDATA[
<stderr_txt>
18:06:31 (4694): wrapper (7.7.26015): starting
18:06:31 (4694): wrapper: running run_atlas (--nthreads 2)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '2']
THREADS=2
Checking for CVMFS
CVMFS is installed
OS:cat: /etc/redhat-release: Datei oder Verzeichnis nicht gefunden
This is not SLC6, need to run with Singularity....
Checking Singularity...
Singularity is installed
copy /var/lib/boinc-client/slots/0/shared/start_atlas.sh
copy /var/lib/boinc-client/slots/0/shared/ATLAS.root_0
copy /var/lib/boinc-client/slots/0/shared/input.tar.gz
copy /var/lib/boinc-client/slots/0/shared/RTE.tar.gz
export ATHENA_PROC_NUMBER=2;start atlas job with
Testing the function of Singularity...
check singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img hostname
Singularity Works...
cmd = singularity exec --pwd /var/lib/boinc-client/slots/0 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.17988802._052100.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-05-21 09:07:59,327 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=2 leak=1.67"
2019-05-21 09:07:59,328 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-21 09:07:59,330 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-4350992555/memory_monitor_summary.json
2019-05-21 09:07:59,332 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 5903920, 'maxSwap': 0, 'totRCHAR': 5039673149, 'totRBYTES': 4580988928, 'totWCHAR': 235921568, 'totWBYTES': 242737152, 'maxVMEM': 8321768, 'maxPSS': 2276615}, 'Avg': {'avgRSS': 5500309, 'rateWCHAR': 3879, 'avgVMEM': 8021520, 'avgPSS': 2186428, 'rateRCHAR': 82877, 'avgSwap': 0, 'rateRBYTES': 75334, 'rateWBYTES': 3991}}
2019-05-21 09:07:59,332 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-21 09:07:59,332 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-21 09:07:59,333 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-21 09:07:59,333 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-21 09:07:59,333 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 20 s
2019-05-21 09:07:59,334 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 28 s
2019-05-21 09:07:59,334 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-21 09:07:59,334 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 28 s
2019-05-21 09:07:59,334 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 20 s
2019-05-21 09:07:59,335 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 60917 s
2019-05-21 09:07:59,335 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 93 s
2019-05-21 09:07:59,335 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-21 09:07:59,336 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-21 09:07:59,336 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /var/lib/boinc-client/slots/0/PanDA_Pilot-4350992555/pandatracerlog.txt (ignoring)
2019-05-21 09:07:59,346 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /var/lib/boinc-client/slots/0/PanDA_Pilot-4350992555/pilotlog.txt
2019-05-21 09:07:59,910 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-05-21 09:07:59,912 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-05-21 09:07:59,327 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 1.67 B/s (using 703 data points, chi2=-75650913575.034485)
2019-05-21 09:07:59,327 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=2 leak=1.67"
2019-05-21 09:07:59,328 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-21 09:07:59,330 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-4350992555/memory_monitor_summary.json
2019-05-21 09:07:59,332 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 5903920, 'maxSwap': 0, 'totRCHAR': 5039673149, 'totRBYTES': 4580988928, 'totWCHAR': 235921568, 'totWBYTES': 242737152, 'maxVMEM': 8321768, 'maxPSS': 2276615}, 'Avg': {'avgRSS': 5500309, 'rateWCHAR': 3879, 'avgVMEM': 8021520, 'avgPSS': 2186428, 'rateRCHAR': 82877, 'avgSwap': 0, 'rateRBYTES': 75334, 'rateWBYTES': 3991}}
2019-05-21 09:07:59,332 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-21 09:07:59,332 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-21 09:07:59,333 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-21 09:07:59,333 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-21 09:07:59,333 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 20 s
2019-05-21 09:07:59,334 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 28 s
2019-05-21 09:07:59,334 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-21 09:07:59,334 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 28 s
2019-05-21 09:07:59,334 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 20 s
2019-05-21 09:07:59,335 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 60917 s
2019-05-21 09:07:59,335 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 93 s
2019-05-21 09:07:59,335 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-21 09:07:59,336 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-21 09:07:59,336 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /var/lib/boinc-client/slots/0/PanDA_Pilot-4350992555/pandatracerlog.txt (ignoring)
2019-05-21 09:07:59,346 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /var/lib/boinc-client/slots/0/PanDA_Pilot-4350992555/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-05-21 09:07:59,918 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /var/lib/boinc-client/slots/0/heartbeat.json
2019-05-21 09:07:59,918 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4350992555 was dequeued from the monitored payloads queue
2019-05-21 09:08:02,889 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-21 09:08:02,890 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-05-21 09:08:02,890 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-21 09:08:02,891 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4350992555
2019-05-21 09:08:02,891 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 17988802
2019-05-21 09:08:02,891 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-05-21 09:08:02,892 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-05-21 09:08:02,892 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-05-21 09:08:02,892 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-05-21 09:08:02,892 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-05-21 09:08:02,893 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-05-21 09:08:02,893 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-05-21 09:08:02,893 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-05-21 09:08:02,893 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 81836 s
2019-05-21 09:08:02,894 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-05-21 09:08:02,894 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-05-21 09:08:02,894 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 11334
2019-05-21 09:08:02,894 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-05-21 09:08:02,895 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 2
2019-05-21 09:08:02,895 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-05-21 09:08:02,895 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-21 09:08:02,896 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-21 09:08:02,896 | INFO | retrieve | pilot.control.job | has_job_completed | job 4350992555 has completed
2019-05-21 09:08:02,896 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-05-21 09:08:02,896 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-05-21 09:08:12,938 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-05-21 09:08:12,938 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc-client/slots/0
2019-05-21 09:08:12,974 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (8447328256 B)
2019-05-21 09:08:12,975 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-05-21 09:08:12,980 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-05-21 09:08:13,001 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-05-21 09:08:13,002 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-05-21 09:08:13,116 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-05-21 09:08:13,378 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-05-21 09:08:13,582 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-05-21 09:08:13,646 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-05-21 09:08:13,684 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-05-21 09:08:14,003 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-05-21 09:08:14,004 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-05-21 09:08:14,133 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-05-21 09:08:14,758 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-05-21 09:08:14,760 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-05-21 09:08:17,141 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-05-21 09:08:33,969 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-05-21 09:08:33,969 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-05-21 09:08:33,970 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-05-21 09:08:34,000 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-05-21 09:08:34,001 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=61270.43s
KernelTime=2418.10s
UserTime=80727.92s
CPUUsage=135%
MaxResidentMemory=2031052kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=35978
MinorPageFaults=15936747
Swaps=0
ForcedSwitches=23960974
WaitSwitches=24927588
Inputs=9139280
Outputs=526584
SocketReceived=0
SocketSent=0
Signals=0
nodename=gyllic@debian
exitcode=0
******************************WorkDir***********************
insgesamt 379592
drwxrwx--x 7 boinc boinc 4096 Mai 21 11:08 .
drwxrwx--x 3 boinc boinc 4096 Mai 20 18:06 ..
-rw------- 1 boinc boinc 499 Mai 21 11:08 9wKMDmn3smunShfckohDCDFpABFKDmABFKDm9PbZDmABFKDmS6GEzm.diag
-rw------- 1 boinc boinc 7252764 Mai 20 18:09 agis_ddmendpoints.json
-rw------- 1 boinc boinc 4884351 Mai 20 18:09 agis_schedconf.cvmfs.json
drwx------ 2 boinc boinc 4096 Mai 20 18:08 .alrb
drwxr-xr-x 3 boinc boinc 4096 Mai 20 18:07 APPS
-rw------- 1 boinc boinc 549 Mai 20 18:08 .asetup
-rw------- 1 boinc boinc 2985 Mai 20 18:11 .asetup.save
-rw-r--r-- 1 boinc boinc 0 Mai 20 18:06 boinc_lockfile
-rw-r--r-- 1 boinc boinc 8192 Mai 21 11:08 boinc_mmap_file
-rw-r--r-- 1 boinc boinc 537 Mai 21 10:54 boinc_task_state.xml
-rw-r--r-- 1 boinc boinc 371039524 Mai 20 18:06 EVNT.17323894._001091.pool.root.1
-rw------- 1 boinc boinc 64179 Mai 21 11:07 heartbeat.json
-rw-r--r-- 1 boinc boinc 5585 Mai 20 18:06 init_data.xml
-rw-r--r-- 1 boinc boinc 247781 Mai 20 18:06 input.tar.gz
-rw-r--r-- 1 boinc boinc 112 Mai 20 18:06 job.xml
-rw------- 1 boinc boinc 2044219 Mai 21 11:08 log.17988802._052100.job.log.1
-rw------- 1 boinc boinc 696991 Mai 21 11:07 log.17988802._052100.job.log.tgz.1
-rw------- 1 boinc boinc 306 Mai 21 11:06 memory_monitor_summary.json
-rw------- 1 boinc boinc 391 Mai 21 11:08 output.list
-rw------- 1 boinc boinc 2885 Mai 20 10:42 pandaJobData.out
drwxrwx--- 3 boinc boinc 4096 Mai 21 11:07 PanDA_Pilot-4350992555
drwx------ 3 boinc boinc 4096 Mai 20 09:54 pilot2
-rw-r--r-- 1 boinc boinc 238821 Mai 20 10:42 pilot2.tar.gz
-rw------- 1 boinc boinc 2030530 Mai 21 11:08 pilotlog.txt
-rw-r--r-- 1 boinc boinc 4444 Mai 20 10:42 queuedata.json
-rw-r--r-- 1 boinc boinc 786 Mai 20 18:06 RTE.tar.gz
-rwxr-xr-x 1 boinc boinc 8512 Mai 20 18:06 run_atlas
-rwx------ 1 boinc boinc 14490 Mai 20 10:42 runpilot2-wrapper.sh
-rw-r--r-- 1 boinc boinc 692 Mai 21 11:08 runtime_log
-rw-r--r-- 1 boinc boinc 7389 Mai 21 11:08 runtime_log.err
drwxrwx--x 2 boinc boinc 4096 Mai 21 11:08 shared
-rw-r--r-- 1 boinc boinc 8743 Mai 20 18:06 start_atlas.sh
-rw-r--r-- 1 boinc boinc 17156 Mai 21 11:08 stderr.txt
-rw-r--r-- 1 boinc boinc 107 Mai 20 18:06 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r-- 1 boinc boinc 28 Mai 21 11:08 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
11:08:55 (4694): run_atlas exited; CPU time 80729.008000
11:08:55 (4694): called boinc_finish(0)
</stderr_txt>
]]>
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