| Name | HYSMDml3smunShfckohDCDFpABFKDmABFKDmNKbZDmABFKDmMwK3No_3 |
| Workunit | 1898179 |
| Created | 20 May 2019, 20:22:56 UTC |
| Sent | 20 May 2019, 20:55:20 UTC |
| Report deadline | 27 May 2019, 20:55:20 UTC |
| Received | 20 May 2019, 23:34:50 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3529 |
| Run time | 2 hours 29 min 53 sec |
| CPU time | 9 hours 19 min 40 sec |
| Validate state | Valid |
| Credit | 274.72 |
| Device peak FLOPS | 13.20 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.85 GB |
| Peak swap size | 2.44 GB |
| Peak disk usage | 842.41 MB |
Stderr output
<core_client_version>7.15.0</core_client_version>
<![CDATA[
<stderr_txt>
23:02:33 (20185): wrapper (7.7.26015): starting
23:02:33 (20185): wrapper: running run_atlas (--nthreads 4)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '4']
THREADS=4
Checking for CVMFS
CVMFS is installed
OS:cat: /etc/redhat-release: No such file or directory
This is not SLC6, need to run with Singularity....
Checking Singularity...
Singularity is installed
copy /home/boinc/slots/0/shared/ATLAS.root_0
copy /home/boinc/slots/0/shared/RTE.tar.gz
copy /home/boinc/slots/0/shared/input.tar.gz
copy /home/boinc/slots/0/shared/start_atlas.sh
export ATHENA_PROC_NUMBER=4;start atlas job with
Testing the function of Singularity...
check singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img hostname
Singularity Works...
cmd = singularity exec --pwd /home/boinc/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.17988785._039832.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-05-20 23:31:12,864 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/boinc/slots/0/PanDA_Pilot-4350992556/memory_monitor_summary.json
2019-05-20 23:31:12,866 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 9667680, 'maxSwap': 0, 'totRCHAR': 2299054326, 'totRBYTES': 3689295872, 'totWCHAR': 127751117, 'totWBYTES': 126226432, 'maxVMEM': 13290760, 'maxPSS': 2572915}, 'Avg': {'avgRSS': 9082779, 'rateWCHAR': 14621, 'avgVMEM': 12693627, 'avgPSS': 2447301, 'rateRCHAR': 263140, 'avgSwap': 0, 'rateRBYTES': 422261, 'rateWBYTES': 14447}}
2019-05-20 23:31:12,866 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-20 23:31:12,866 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-20 23:31:12,866 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-20 23:31:12,867 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-20 23:31:12,867 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 6 s
2019-05-20 23:31:12,867 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 15 s
2019-05-20 23:31:12,867 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-20 23:31:12,867 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 15 s
2019-05-20 23:31:12,867 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 6 s
2019-05-20 23:31:12,868 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 8803 s
2019-05-20 23:31:12,868 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 23 s
2019-05-20 23:31:12,868 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-20 23:31:12,868 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-20 23:31:12,868 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /home/boinc/slots/0/PanDA_Pilot-4350992556/pandatracerlog.txt (ignoring)
2019-05-20 23:31:12,869 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-4350992556/pilotlog.txt
2019-05-20 23:31:12,915 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-05-20 23:31:12,915 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-05-20 23:31:12,863 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 19.58 B/s (using 137 data points, chi2=-16945615672.553671)
2019-05-20 23:31:12,863 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=4 leak=19.58"
2019-05-20 23:31:12,863 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-20 23:31:12,864 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/boinc/slots/0/PanDA_Pilot-4350992556/memory_monitor_summary.json
2019-05-20 23:31:12,866 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 9667680, 'maxSwap': 0, 'totRCHAR': 2299054326, 'totRBYTES': 3689295872, 'totWCHAR': 127751117, 'totWBYTES': 126226432, 'maxVMEM': 13290760, 'maxPSS': 2572915}, 'Avg': {'avgRSS': 9082779, 'rateWCHAR': 14621, 'avgVMEM': 12693627, 'avgPSS': 2447301, 'rateRCHAR': 263140, 'avgSwap': 0, 'rateRBYTES': 422261, 'rateWBYTES': 14447}}
2019-05-20 23:31:12,866 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-20 23:31:12,866 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-20 23:31:12,866 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-20 23:31:12,867 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-20 23:31:12,867 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 6 s
2019-05-20 23:31:12,867 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 15 s
2019-05-20 23:31:12,867 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-20 23:31:12,867 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 15 s
2019-05-20 23:31:12,867 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 6 s
2019-05-20 23:31:12,868 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 8803 s
2019-05-20 23:31:12,868 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 23 s
2019-05-20 23:31:12,868 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-20 23:31:12,868 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-20 23:31:12,868 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /home/boinc/slots/0/PanDA_Pilot-4350992556/pandatracerlog.txt (ignoring)
2019-05-20 23:31:12,869 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-4350992556/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-05-20 23:31:12,916 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /home/boinc/slots/0/heartbeat.json
2019-05-20 23:31:12,916 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4350992556 was dequeued from the monitored payloads queue
2019-05-20 23:31:13,850 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-20 23:31:13,850 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-05-20 23:31:13,851 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-20 23:31:13,851 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4350992556
2019-05-20 23:31:13,851 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 17988785
2019-05-20 23:31:13,851 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-05-20 23:31:13,852 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-05-20 23:31:13,852 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-05-20 23:31:13,852 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-05-20 23:31:13,852 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-05-20 23:31:13,853 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-05-20 23:31:13,853 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-05-20 23:31:13,853 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-05-20 23:31:13,854 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 33485 s
2019-05-20 23:31:13,854 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-05-20 23:31:13,854 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-05-20 23:31:13,855 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 26736
2019-05-20 23:31:13,855 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-05-20 23:31:13,855 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4
2019-05-20 23:31:13,856 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-05-20 23:31:13,856 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-20 23:31:13,856 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-20 23:31:13,856 | INFO | retrieve | pilot.control.job | has_job_completed | job 4350992556 has completed
2019-05-20 23:31:13,857 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-05-20 23:31:13,857 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-05-20 23:31:23,648 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-05-20 23:31:23,891 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-05-20 23:31:23,891 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/boinc/slots/0
2019-05-20 23:31:23,914 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (884617510912 B)
2019-05-20 23:31:23,915 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-05-20 23:31:23,922 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-05-20 23:31:23,923 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-05-20 23:31:23,930 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-05-20 23:31:23,964 | WARNING | job_monitor | pilot.util.common | should_abort | job:job_monitor:received graceful stop - abort after this iteration
2019-05-20 23:31:24,501 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-05-20 23:31:24,518 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-05-20 23:31:24,649 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-05-20 23:31:24,677 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-05-20 23:31:24,918 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-05-20 23:31:24,923 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-05-20 23:31:24,924 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-05-20 23:31:25,727 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-05-20 23:31:25,743 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-05-20 23:31:25,744 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-05-20 23:31:28,728 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-05-20 23:32:24,000 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 122 s)
2019-05-20 23:32:24,000 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-05-20 23:32:24,001 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-05-20 23:32:24,001 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-05-20 23:32:24,001 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=8983.14s
KernelTime=112.16s
UserTime=33580.29s
CPUUsage=375%
MaxResidentMemory=1953392kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=21892
MinorPageFaults=7470553
Swaps=0
ForcedSwitches=6359339
WaitSwitches=8399441
Inputs=7403522
Outputs=504128
SocketReceived=0
SocketSent=0
Signals=0
nodename=gyllic@boinc-debian-rechner
exitcode=0
******************************WorkDir***********************
total 381184
drwxrwx--x 7 boinc boinc 4096 May 21 01:32 .
drwxrwx--x 4 boinc boinc 4096 May 19 20:53 ..
drwx------ 2 boinc boinc 4096 May 20 23:03 .alrb
-rw------- 1 boinc boinc 539 May 20 23:03 .asetup
-rw------- 1 boinc boinc 2975 May 20 23:04 .asetup.save
drwxr-xr-x 3 boinc boinc 4096 May 20 23:02 APPS
-rw-r--r-- 1 boinc boinc 375630792 May 20 23:02 EVNT.17323890._000808.pool.root.1
-rw------- 1 boinc boinc 508 May 21 01:32 HYSMDml3smunShfckohDCDFpABFKDmABFKDmNKbZDmABFKDmMwK3No.diag
drwxrwx--- 3 boinc boinc 4096 May 21 01:31 PanDA_Pilot-4350992556
-rw-r--r-- 1 boinc boinc 786 May 20 23:02 RTE.tar.gz
-rw------- 1 boinc boinc 7252764 May 20 23:03 agis_ddmendpoints.json
-rw------- 1 boinc boinc 4884421 May 20 23:03 agis_schedconf.cvmfs.json
-rw-r--r-- 1 boinc boinc 0 May 20 23:02 boinc_lockfile
-rw-r--r-- 1 boinc boinc 8192 May 21 01:32 boinc_mmap_file
-rw-r--r-- 1 boinc boinc 536 May 21 01:26 boinc_task_state.xml
-rw------- 1 boinc boinc 60293 May 21 01:31 heartbeat.json
-rw-r--r-- 1 boinc boinc 5935 May 20 23:02 init_data.xml
-rw-r--r-- 1 boinc boinc 247782 May 20 23:02 input.tar.gz
-rw-r--r-- 1 boinc boinc 112 May 20 23:02 job.xml
-rw------- 1 boinc boinc 532446 May 21 01:32 log.17988785._039832.job.log.1
-rw------- 1 boinc boinc 765112 May 21 01:30 log.17988785._039832.job.log.tgz.1
-rw------- 1 boinc boinc 312 May 21 01:30 memory_monitor_summary.json
-rw------- 1 boinc boinc 391 May 21 01:32 output.list
-rw------- 1 boinc boinc 2886 May 20 10:42 pandaJobData.out
drwx------ 3 boinc boinc 4096 May 20 09:54 pilot2
-rw-r--r-- 1 boinc boinc 238821 May 20 10:42 pilot2.tar.gz
-rw------- 1 boinc boinc 519477 May 21 01:32 pilotlog.txt
-rw-r--r-- 1 boinc boinc 4444 May 20 10:42 queuedata.json
-rwxr-xr-x 1 boinc boinc 8512 May 20 23:02 run_atlas
-rwx------ 1 boinc boinc 14490 May 20 10:42 runpilot2-wrapper.sh
-rw-r--r-- 1 boinc boinc 692 May 21 01:32 runtime_log
-rw-r--r-- 1 boinc boinc 7786 May 21 01:32 runtime_log.err
-rw------- 1 boinc boinc 242 May 20 23:02 setup.sh.local
drwxrwx--x 2 boinc boinc 4096 May 21 01:32 shared
-rw-r--r-- 1 boinc boinc 8743 May 20 23:02 start_atlas.sh
-rw-r--r-- 1 boinc boinc 17075 May 21 01:32 stderr.txt
-rw-r--r-- 1 boinc boinc 107 May 20 23:02 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r-- 1 boinc boinc 27 May 21 01:32 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
01:32:24 (20185): run_atlas exited; CPU time 33580.708000
01:32:24 (20185): called boinc_finish(0)
</stderr_txt>
]]>
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