Name | 6iGKDm9kJnunShfckohDCDFpABFKDmABFKDmLwuaDmABFKDmIuJnMn_1 |
Workunit | 1898576 |
Created | 21 May 2019, 15:56:17 UTC |
Sent | 21 May 2019, 16:39:36 UTC |
Report deadline | 28 May 2019, 16:39:36 UTC |
Received | 21 May 2019, 22:19:44 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 3529 |
Run time | 2 hours 24 min 6 sec |
CPU time | 8 hours 56 min 35 sec |
Validate state | Valid |
Credit | 264.13 |
Device peak FLOPS | 13.20 GFLOPS |
Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.88 GB |
Peak swap size | 2.44 GB |
Peak disk usage | 834.02 MB |
<core_client_version>7.15.0</core_client_version> <![CDATA[ <stderr_txt> 21:53:17 (5175): wrapper (7.7.26015): starting 21:53:17 (5175): wrapper: running run_atlas (--nthreads 4) singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img sys.argv = ['run_atlas', '--nthreads', '4'] THREADS=4 Checking for CVMFS CVMFS is installed OS:cat: /etc/redhat-release: No such file or directory This is not SLC6, need to run with Singularity.... Checking Singularity... Singularity is installed copy /home/boinc/slots/0/shared/ATLAS.root_0 copy /home/boinc/slots/0/shared/RTE.tar.gz copy /home/boinc/slots/0/shared/input.tar.gz copy /home/boinc/slots/0/shared/start_atlas.sh export ATHENA_PROC_NUMBER=4;start atlas job with Testing the function of Singularity... check singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img hostname Singularity Works... cmd = singularity exec --pwd /home/boinc/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.17988785._046863.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-05-21 22:16:28,098 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=4 leak=22.64" 2019-05-21 22:16:28,098 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events 2019-05-21 22:16:28,100 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/boinc/slots/0/PanDA_Pilot-4353443433/memory_monitor_summary.json 2019-05-21 22:16:28,101 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 9755368, 'maxSwap': 0, 'totRCHAR': 2272086449, 'totRBYTES': 3594937344, 'totWCHAR': 143233485, 'totWBYTES': 141873152, 'maxVMEM': 13313368, 'maxPSS': 2579611}, 'Avg': {'avgRSS': 8989542, 'rateWCHAR': 16884, 'avgVMEM': 12563290, 'avgPSS': 2427530, 'rateRCHAR': 267839, 'avgSwap': 0, 'rateRBYTES': 423781, 'rateWBYTES': 16724}} 2019-05-21 22:16:28,102 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json 2019-05-21 22:16:28,102 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json 2019-05-21 22:16:28,102 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | .............................. 2019-05-21 22:16:28,102 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements: 2019-05-21 22:16:28,103 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 6 s 2019-05-21 22:16:28,103 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 15 s 2019-05-21 22:16:28,103 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s 2019-05-21 22:16:28,103 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 15 s 2019-05-21 22:16:28,103 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 6 s 2019-05-21 22:16:28,104 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 8509 s 2019-05-21 22:16:28,104 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 23 s 2019-05-21 22:16:28,104 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | .............................. 2019-05-21 22:16:28,104 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog') 2019-05-21 22:16:28,104 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /home/boinc/slots/0/PanDA_Pilot-4353443433/pandatracerlog.txt (ignoring) 2019-05-21 22:16:28,105 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-4353443433/pilotlog.txt 2019-05-21 22:16:28,138 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt: 2019-05-21 22:16:28,139 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log: - Log from pilotlog.txt -2019-05-21 22:16:28,097 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 22.64 B/s (using 133 data points, chi2=-12058558094.324652) 2019-05-21 22:16:28,098 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=4 leak=22.64" 2019-05-21 22:16:28,098 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events 2019-05-21 22:16:28,100 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /home/boinc/slots/0/PanDA_Pilot-4353443433/memory_monitor_summary.json 2019-05-21 22:16:28,101 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 9755368, 'maxSwap': 0, 'totRCHAR': 2272086449, 'totRBYTES': 3594937344, 'totWCHAR': 143233485, 'totWBYTES': 141873152, 'maxVMEM': 13313368, 'maxPSS': 2579611}, 'Avg': {'avgRSS': 8989542, 'rateWCHAR': 16884, 'avgVMEM': 12563290, 'avgPSS': 2427530, 'rateRCHAR': 267839, 'avgSwap': 0, 'rateRBYTES': 423781, 'rateWBYTES': 16724}} 2019-05-21 22:16:28,102 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json 2019-05-21 22:16:28,102 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json 2019-05-21 22:16:28,102 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | .............................. 2019-05-21 22:16:28,102 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements: 2019-05-21 22:16:28,103 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 6 s 2019-05-21 22:16:28,103 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 15 s 2019-05-21 22:16:28,103 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s 2019-05-21 22:16:28,103 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 15 s 2019-05-21 22:16:28,103 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 6 s 2019-05-21 22:16:28,104 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 8509 s 2019-05-21 22:16:28,104 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 23 s 2019-05-21 22:16:28,104 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | .............................. 2019-05-21 22:16:28,104 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog') 2019-05-21 22:16:28,104 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /home/boinc/slots/0/PanDA_Pilot-4353443433/pandatracerlog.txt (ignoring) 2019-05-21 22:16:28,105 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-4353443433/pilotlog.txt - Error messages from pilotlog.txt - "CRITICAL": 0, "ERROR": 0, "FATAL": 0, 2019-05-21 22:16:28,140 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /home/boinc/slots/0/heartbeat.json 2019-05-21 22:16:28,140 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4353443433 was dequeued from the monitored payloads queue 2019-05-21 22:16:29,227 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-05-21 22:16:29,228 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-05-21 22:16:29,228 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-05-21 22:16:29,229 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4353443433 2019-05-21 22:16:29,229 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 17988785 2019-05-21 22:16:29,229 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-05-21 22:16:29,229 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-05-21 22:16:29,230 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-05-21 22:16:29,230 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-05-21 22:16:29,230 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-05-21 22:16:29,230 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-05-21 22:16:29,230 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-05-21 22:16:29,231 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-05-21 22:16:29,231 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 32117 s 2019-05-21 22:16:29,231 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0 2019-05-21 22:16:29,231 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-05-21 22:16:29,231 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 11730 2019-05-21 22:16:29,231 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None 2019-05-21 22:16:29,231 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4 2019-05-21 22:16:29,231 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-05-21 22:16:29,231 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-05-21 22:16:29,232 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-05-21 22:16:29,232 | INFO | retrieve | pilot.control.job | has_job_completed | job 4353443433 has completed 2019-05-21 22:16:29,232 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-05-21 22:16:29,232 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-05-21 22:16:39,245 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-05-21 22:16:39,245 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /home/boinc/slots/0 2019-05-21 22:16:39,256 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (887065935872 B) 2019-05-21 22:16:39,256 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-05-21 22:16:39,266 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-05-21 22:16:39,266 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort 2019-05-21 22:16:39,420 | INFO | monitor | pilot.control.monitor | control | monitor control has ended 2019-05-21 22:16:39,701 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-05-21 22:16:39,782 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-05-21 22:16:39,852 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set 2019-05-21 22:16:40,006 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-05-21 22:16:40,010 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished 2019-05-21 22:16:40,266 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting 2019-05-21 22:16:40,266 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished 2019-05-21 22:16:40,932 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-05-21 22:16:40,932 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished 2019-05-21 22:16:41,077 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-05-21 22:16:44,078 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished 2019-05-21 22:17:21,876 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s) 2019-05-21 22:17:21,876 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished 2019-05-21 22:17:21,877 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-05-21 22:17:21,877 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-05-21 22:17:21,877 | INFO | MainThread | root | wrap_up | pilot has finished ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=8637.30s KernelTime=107.68s UserTime=32194.90s CPUUsage=373% MaxResidentMemory=2035456kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=20730 MinorPageFaults=7351158 Swaps=0 ForcedSwitches=6147599 WaitSwitches=8136695 Inputs=7139160 Outputs=482472 SocketReceived=0 SocketSent=0 Signals=0 nodename=gyllic@boinc-debian-rechner exitcode=0 ******************************WorkDir*********************** total 379464 drwxrwx--x 7 boinc boinc 4096 May 22 00:17 . drwxrwx--x 4 boinc boinc 4096 May 19 20:53 .. drwx------ 2 boinc boinc 4096 May 21 21:53 .alrb -rw------- 1 boinc boinc 539 May 21 21:53 .asetup -rw------- 1 boinc boinc 2975 May 21 21:54 .asetup.save -rw------- 1 boinc boinc 508 May 22 00:17 6iGKDm9kJnunShfckohDCDFpABFKDmABFKDmLwuaDmABFKDmIuJnMn.diag drwxr-xr-x 3 boinc boinc 4096 May 21 21:53 APPS -rw-r--r-- 1 boinc boinc 373926431 May 21 21:53 EVNT.17323890._000950.pool.root.1 drwxrwx--- 3 boinc boinc 4096 May 22 00:16 PanDA_Pilot-4353443433 -rw-r--r-- 1 boinc boinc 786 May 21 21:53 RTE.tar.gz -rw------- 1 boinc boinc 7252817 May 21 21:53 agis_ddmendpoints.json -rw------- 1 boinc boinc 4862927 May 21 21:53 agis_schedconf.cvmfs.json -rw-r--r-- 1 boinc boinc 0 May 21 21:53 boinc_lockfile -rw-r--r-- 1 boinc boinc 8192 May 22 00:17 boinc_mmap_file -rw-r--r-- 1 boinc boinc 536 May 22 00:11 boinc_task_state.xml -rw------- 1 boinc boinc 54673 May 22 00:16 heartbeat.json -rw-r--r-- 1 boinc boinc 5937 May 21 21:53 init_data.xml -rw-r--r-- 1 boinc boinc 247811 May 21 21:53 input.tar.gz -rw-r--r-- 1 boinc boinc 112 May 21 21:53 job.xml -rw------- 1 boinc boinc 513482 May 22 00:17 log.17988785._046863.job.log.1 -rw------- 1 boinc boinc 764862 May 22 00:16 log.17988785._046863.job.log.tgz.1 -rw------- 1 boinc boinc 312 May 22 00:15 memory_monitor_summary.json -rw------- 1 boinc boinc 391 May 22 00:17 output.list -rw------- 1 boinc boinc 2887 May 21 15:13 pandaJobData.out drwx------ 3 boinc boinc 4096 May 20 09:54 pilot2 -rw-r--r-- 1 boinc boinc 238821 May 20 10:42 pilot2.tar.gz -rw------- 1 boinc boinc 500513 May 22 00:17 pilotlog.txt -rw-r--r-- 1 boinc boinc 4444 May 21 15:12 queuedata.json -rwxr-xr-x 1 boinc boinc 8512 May 21 21:53 run_atlas -rwx------ 1 boinc boinc 14753 May 21 15:13 runpilot2-wrapper.sh -rw-r--r-- 1 boinc boinc 692 May 22 00:17 runtime_log -rw-r--r-- 1 boinc boinc 7786 May 22 00:17 runtime_log.err -rw------- 1 boinc boinc 242 May 21 21:53 setup.sh.local drwxrwx--x 2 boinc boinc 4096 May 22 00:17 shared -rw-r--r-- 1 boinc boinc 8743 May 21 21:53 start_atlas.sh -rw-r--r-- 1 boinc boinc 17035 May 22 00:17 stderr.txt -rw-r--r-- 1 boinc boinc 107 May 21 21:53 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r-- 1 boinc boinc 27 May 22 00:17 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 00:17:22 (5175): run_atlas exited; CPU time 32195.376000 00:17:22 (5175): called boinc_finish(0) </stderr_txt> ]]>
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