| Name | 5OrNDm3NenunShfckohDCDFpABFKDmABFKDmWtjbDmABFKDmoOr4Sn_0 |
| Workunit | 1898913 |
| Created | 22 May 2019, 11:14:58 UTC |
| Sent | 22 May 2019, 16:28:32 UTC |
| Report deadline | 29 May 2019, 16:28:32 UTC |
| Received | 23 May 2019, 3:01:01 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 32 min 29 sec |
| CPU time | 10 hours 48 min 3 sec |
| Validate state | Valid |
| Credit | 175.65 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.46 GB |
| Peak disk usage | 837.30 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
00:36:20 (27147): wrapper (7.7.26015): starting
00:36:20 (27147): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/7/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/7/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/7/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/7/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.17988824._045807.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-05-23 09:24:45,433 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=5.40"
2019-05-23 09:24:45,433 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-23 09:24:45,434 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/7/PanDA_Pilot-4355219674/memory_monitor_summary.json
2019-05-23 09:24:45,436 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2115668, 'maxSwap': 4, 'totRCHAR': 1656011518, 'totRBYTES': 1634713600, 'totWCHAR': 116501428, 'totWBYTES': 127045632, 'maxVMEM': 3251636, 'maxPSS': 2107219}, 'Avg': {'avgRSS': 2065117, 'rateWCHAR': 3010, 'avgVMEM': 3167440, 'avgPSS': 2056246, 'rateRCHAR': 42787, 'avgSwap': 0, 'rateRBYTES': 42237, 'rateWBYTES': 3282}}
2019-05-23 09:24:45,436 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-23 09:24:45,436 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-23 09:24:45,436 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-23 09:24:45,436 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-23 09:24:45,436 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-05-23 09:24:45,436 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 17 s
2019-05-23 09:24:45,437 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-23 09:24:45,437 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 17 s
2019-05-23 09:24:45,437 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-05-23 09:24:45,437 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38779 s
2019-05-23 09:24:45,437 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-05-23 09:24:45,438 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-23 09:24:45,438 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-23 09:24:45,438 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/7/PanDA_Pilot-4355219674/pandatracerlog.txt (ignoring)
2019-05-23 09:24:45,438 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/7/PanDA_Pilot-4355219674/pilotlog.txt
2019-05-23 09:24:45,566 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-05-23 09:24:45,636 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-05-23 09:24:45,433 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 5.40 B/s (using 623 data points, chi2=3099450943.081800)
2019-05-23 09:24:45,433 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=5.40"
2019-05-23 09:24:45,433 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-23 09:24:45,434 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/7/PanDA_Pilot-4355219674/memory_monitor_summary.json
2019-05-23 09:24:45,436 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2115668, 'maxSwap': 4, 'totRCHAR': 1656011518, 'totRBYTES': 1634713600, 'totWCHAR': 116501428, 'totWBYTES': 127045632, 'maxVMEM': 3251636, 'maxPSS': 2107219}, 'Avg': {'avgRSS': 2065117, 'rateWCHAR': 3010, 'avgVMEM': 3167440, 'avgPSS': 2056246, 'rateRCHAR': 42787, 'avgSwap': 0, 'rateRBYTES': 42237, 'rateWBYTES': 3282}}
2019-05-23 09:24:45,436 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-23 09:24:45,436 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-23 09:24:45,436 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-23 09:24:45,436 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-23 09:24:45,436 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-05-23 09:24:45,436 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 17 s
2019-05-23 09:24:45,437 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-23 09:24:45,437 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 17 s
2019-05-23 09:24:45,437 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-05-23 09:24:45,437 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38779 s
2019-05-23 09:24:45,437 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-05-23 09:24:45,438 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-23 09:24:45,438 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-23 09:24:45,438 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/7/PanDA_Pilot-4355219674/pandatracerlog.txt (ignoring)
2019-05-23 09:24:45,438 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/7/PanDA_Pilot-4355219674/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-05-23 09:24:45,639 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/7/heartbeat.json
2019-05-23 09:24:45,640 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4355219674 was dequeued from the monitored payloads queue
2019-05-23 09:24:47,020 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-23 09:24:47,020 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-05-23 09:24:47,020 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-23 09:24:47,020 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4355219674
2019-05-23 09:24:47,021 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 17988824
2019-05-23 09:24:47,021 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-05-23 09:24:47,021 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-05-23 09:24:47,021 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-05-23 09:24:47,021 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-05-23 09:24:47,021 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-05-23 09:24:47,021 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-05-23 09:24:47,021 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-05-23 09:24:47,021 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-05-23 09:24:47,022 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 38624 s
2019-05-23 09:24:47,022 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-05-23 09:24:47,022 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-05-23 09:24:47,022 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 871
2019-05-23 09:24:47,022 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-05-23 09:24:47,022 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-05-23 09:24:47,022 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-05-23 09:24:47,022 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-23 09:24:47,022 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-23 09:24:47,023 | INFO | retrieve | pilot.control.job | has_job_completed | job 4355219674 has completed
2019-05-23 09:24:47,023 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-05-23 09:24:47,023 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-05-23 09:24:57,036 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-05-23 09:24:57,037 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/7
2019-05-23 09:24:57,061 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14397997056 B)
2019-05-23 09:24:57,062 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-05-23 09:24:57,087 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-05-23 09:24:57,156 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-05-23 09:24:57,447 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-05-23 09:24:57,451 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-05-23 09:24:57,474 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-05-23 09:24:57,616 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-05-23 09:24:57,660 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-05-23 09:24:57,660 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-05-23 09:24:57,905 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-05-23 09:24:58,681 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-05-23 09:24:58,682 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-05-23 09:24:58,682 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-05-23 09:24:58,683 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-05-23 09:25:00,515 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-05-23 09:25:42,855 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-05-23 09:25:42,855 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-05-23 09:25:42,856 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-05-23 09:25:42,857 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-05-23 09:25:42,857 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=38953.48s
KernelTime=1060.55s
UserTime=38619.40s
CPUUsage=101%
MaxResidentMemory=2029536kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9609
MinorPageFaults=16652631
Swaps=0
ForcedSwitches=531295
WaitSwitches=21386916
Inputs=3341640
Outputs=314984
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 382076
drwxrwx--x. 7 root root 4096 23. Mai 11:25 .
drwxr-x--x. 10 root root 4096 23. Mai 00:36 ..
-rw-------. 1 root root 494 23. Mai 11:25 5OrNDm3NenunShfckohDCDFpABFKDmABFKDmWtjbDmABFKDmoOr4Sn.diag
-rw-------. 1 root root 7252817 23. Mai 00:37 agis_ddmendpoints.json
-rw-------. 1 root root 4855176 23. Mai 00:37 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 23. Mai 00:36 .alrb
drwxr-xr-x. 3 root root 4096 23. Mai 00:36 APPS
-rw-------. 1 root root 549 23. Mai 00:36 .asetup
-rw-------. 1 root root 2985 23. Mai 00:37 .asetup.save
-rw-r--r--. 1 root root 0 23. Mai 00:36 boinc_lockfile
-rw-r--r--. 1 root root 8192 23. Mai 11:25 boinc_mmap_file
-rw-r--r--. 1 root root 537 23. Mai 11:23 boinc_task_state.xml
-rw-r--r--. 1 root root 374508015 23. Mai 00:36 EVNT.17323899._000965.pool.root.1
-rw-------. 1 root root 59234 23. Mai 11:24 heartbeat.json
-rw-r--r--. 1 root root 5467 23. Mai 00:36 init_data.xml
-rw-r--r--. 1 root root 247813 23. Mai 00:36 input.tar.gz
-rw-r--r--. 1 root root 112 23. Mai 00:36 job.xml
-rw-------. 1 root root 1784729 23. Mai 11:25 log.17988824._045807.job.log.1
-rw-------. 1 root root 327018 23. Mai 11:24 log.17988824._045807.job.log.tgz.1
-rw-------. 1 root root 306 23. Mai 11:24 memory_monitor_summary.json
-rw-------. 1 root root 391 23. Mai 11:25 output.list
-rw-------. 1 4871 1028 2888 22. Mai 13:14 pandaJobData.out
drwxrwx---. 2 root root 4096 23. Mai 11:24 PanDA_Pilot-4355219674
drwxr-xr-x. 3 501 games 4096 20. Mai 09:54 pilot2
-rw-r--r--. 1 root root 238821 20. Mai 10:42 pilot2.tar.gz
-rw-------. 1 root root 1769653 23. Mai 11:25 pilotlog.txt
-rw-r--r--. 1 root root 4444 22. Mai 13:14 queuedata.json
-rw-r--r--. 1 root root 786 23. Mai 00:36 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 23. Mai 00:36 run_atlas
-rwx------. 1 4871 1028 14753 22. Mai 13:14 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 23. Mai 11:25 runtime_log
-rw-r--r--. 1 root root 7327 23. Mai 11:25 runtime_log.err
drwxrwx--x. 2 root root 4096 23. Mai 11:25 shared
-rw-r--r--. 1 root root 8714 23. Mai 00:36 start_atlas.sh
-rw-r--r--. 1 root root 16729 23. Mai 11:25 stderr.txt
-rw-r--r--. 1 root root 107 23. Mai 00:36 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 23. Mai 11:25 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
11:25:43 (27147): run_atlas exited; CPU time 38619.820894
11:25:43 (27147): called boinc_finish(0)
</stderr_txt>
]]>
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