| Name | dPAMDm7f3nunShfckohDCDFpABFKDmABFKDmda8KDmABFKDmgWYcQm_1 |
| Workunit | 1899307 |
| Created | 24 May 2019, 0:12:13 UTC |
| Sent | 24 May 2019, 0:50:37 UTC |
| Report deadline | 31 May 2019, 0:50:37 UTC |
| Received | 24 May 2019, 11:21:40 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 31 min 3 sec |
| CPU time | 10 hours 50 min 30 sec |
| Validate state | Valid |
| Credit | 175.25 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.58 GB |
| Peak disk usage | 843.66 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
09:57:24 (14864): wrapper (7.7.26015): starting
09:57:24 (14864): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/10/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/10/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/10/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/10/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18099229._008152.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-05-24 18:43:11,725 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-24 18:43:11,726 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/10/PanDA_Pilot-4356927744/memory_monitor_summary.json
2019-05-24 18:43:11,727 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2117052, 'maxSwap': 0, 'totRCHAR': 1656067408, 'totRBYTES': 1637617664, 'totWCHAR': 118521798, 'totWBYTES': 128925696, 'maxVMEM': 3223568, 'maxPSS': 2108606}, 'Avg': {'avgRSS': 2075851, 'rateWCHAR': 3073, 'avgVMEM': 3175102, 'avgPSS': 2067113, 'rateRCHAR': 42946, 'avgSwap': 0, 'rateRBYTES': 42468, 'rateWBYTES': 3343}}
2019-05-24 18:43:11,728 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-24 18:43:11,728 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-24 18:43:11,728 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-24 18:43:11,728 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-24 18:43:11,728 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-05-24 18:43:11,728 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-05-24 18:43:11,729 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-24 18:43:11,729 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-05-24 18:43:11,729 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-05-24 18:43:11,729 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38639 s
2019-05-24 18:43:11,729 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-05-24 18:43:11,729 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-24 18:43:11,729 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-24 18:43:11,729 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/10/PanDA_Pilot-4356927744/pandatracerlog.txt (ignoring)
2019-05-24 18:43:11,730 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/10/PanDA_Pilot-4356927744/pilotlog.txt
2019-05-24 18:43:11,861 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-05-24 18:43:11,937 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-05-24 18:43:11,724 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.92 B/s (using 621 data points, chi2=-99403738669.688873)
2019-05-24 18:43:11,724 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.92"
2019-05-24 18:43:11,725 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-24 18:43:11,726 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/10/PanDA_Pilot-4356927744/memory_monitor_summary.json
2019-05-24 18:43:11,727 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2117052, 'maxSwap': 0, 'totRCHAR': 1656067408, 'totRBYTES': 1637617664, 'totWCHAR': 118521798, 'totWBYTES': 128925696, 'maxVMEM': 3223568, 'maxPSS': 2108606}, 'Avg': {'avgRSS': 2075851, 'rateWCHAR': 3073, 'avgVMEM': 3175102, 'avgPSS': 2067113, 'rateRCHAR': 42946, 'avgSwap': 0, 'rateRBYTES': 42468, 'rateWBYTES': 3343}}
2019-05-24 18:43:11,728 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-24 18:43:11,728 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-24 18:43:11,728 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-24 18:43:11,728 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-24 18:43:11,728 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-05-24 18:43:11,728 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-05-24 18:43:11,729 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-24 18:43:11,729 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-05-24 18:43:11,729 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-05-24 18:43:11,729 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38639 s
2019-05-24 18:43:11,729 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-05-24 18:43:11,729 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-24 18:43:11,729 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-24 18:43:11,729 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/10/PanDA_Pilot-4356927744/pandatracerlog.txt (ignoring)
2019-05-24 18:43:11,730 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/10/PanDA_Pilot-4356927744/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-05-24 18:43:11,939 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/10/heartbeat.json
2019-05-24 18:43:11,939 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4356927744 was dequeued from the monitored payloads queue
2019-05-24 18:43:12,954 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-24 18:43:12,955 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-05-24 18:43:12,955 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-24 18:43:12,955 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4356927744
2019-05-24 18:43:12,955 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18099229
2019-05-24 18:43:12,955 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-05-24 18:43:12,955 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-05-24 18:43:12,955 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-05-24 18:43:12,956 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-05-24 18:43:12,956 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-05-24 18:43:12,956 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-05-24 18:43:12,956 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-05-24 18:43:12,956 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-05-24 18:43:12,956 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 38769 s
2019-05-24 18:43:12,956 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-05-24 18:43:12,956 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-05-24 18:43:12,956 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 21044
2019-05-24 18:43:12,957 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-05-24 18:43:12,957 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-05-24 18:43:12,957 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-05-24 18:43:12,957 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-24 18:43:12,957 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-24 18:43:12,957 | INFO | retrieve | pilot.control.job | has_job_completed | job 4356927744 has completed
2019-05-24 18:43:12,957 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-05-24 18:43:12,957 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-05-24 18:43:19,202 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s)
2019-05-24 18:43:23,001 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-05-24 18:43:23,001 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/10
2019-05-24 18:43:23,037 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14315159552 B)
2019-05-24 18:43:23,037 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-05-24 18:43:23,065 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-05-24 18:43:23,069 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-05-24 18:43:23,069 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-05-24 18:43:23,070 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-05-24 18:43:23,135 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-05-24 18:43:23,248 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-05-24 18:43:23,662 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-05-24 18:43:23,829 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-05-24 18:43:24,076 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-05-24 18:43:24,077 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-05-24 18:43:24,374 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-05-24 18:43:24,985 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-05-24 18:43:24,986 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-05-24 18:43:27,500 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-05-24 18:44:20,233 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 123 s)
2019-05-24 18:44:20,236 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-05-24 18:44:20,237 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-05-24 18:44:20,237 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-05-24 18:44:20,238 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=38810.02s
KernelTime=932.10s
UserTime=38735.45s
CPUUsage=102%
MaxResidentMemory=2004740kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9565
MinorPageFaults=15937768
Swaps=0
ForcedSwitches=423384
WaitSwitches=19657505
Inputs=3337688
Outputs=308768
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 383820
drwxrwx--x. 7 root root 4096 24. Mai 20:44 .
drwxr-x--x. 13 root root 4096 24. Mai 09:57 ..
-rw-------. 1 root root 7252817 24. Mai 09:57 agis_ddmendpoints.json
-rw-------. 1 root root 4822994 24. Mai 09:57 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 24. Mai 09:57 .alrb
drwxr-xr-x. 3 root root 4096 24. Mai 09:57 APPS
-rw-------. 1 root root 550 24. Mai 09:57 .asetup
-rw-------. 1 root root 2986 24. Mai 09:58 .asetup.save
-rw-r--r--. 1 root root 0 24. Mai 09:57 boinc_lockfile
-rw-r--r--. 1 root root 8192 24. Mai 20:44 boinc_mmap_file
-rw-r--r--. 1 root root 537 24. Mai 20:42 boinc_task_state.xml
-rw-------. 1 root root 493 24. Mai 20:44 dPAMDm7f3nunShfckohDCDFpABFKDmABFKDmda8KDmABFKDmgWYcQm.diag
-rw-r--r--. 1 root root 376355952 24. Mai 09:57 EVNT.17323923._000183.pool.root.1
-rw-------. 1 root root 54769 24. Mai 20:43 heartbeat.json
-rw-r--r--. 1 root root 5469 24. Mai 09:57 init_data.xml
-rw-r--r--. 1 root root 247814 24. Mai 09:57 input.tar.gz
-rw-r--r--. 1 root root 112 24. Mai 09:57 job.xml
-rw-------. 1 root root 1776299 24. Mai 20:44 log.18099229._008152.job.log.1
-rw-------. 1 root root 323299 24. Mai 20:42 log.18099229._008152.job.log.tgz.1
-rw-------. 1 root root 306 24. Mai 20:42 memory_monitor_summary.json
-rw-------. 1 root root 391 24. Mai 20:44 output.list
-rw-------. 1 4871 1028 2886 23. Mai 16:15 pandaJobData.out
drwxrwx---. 2 root root 4096 24. Mai 20:43 PanDA_Pilot-4356927744
drwxr-xr-x. 3 501 games 4096 20. Mai 09:54 pilot2
-rw-r--r--. 1 root root 238821 20. Mai 10:42 pilot2.tar.gz
-rw-------. 1 root root 1761211 24. Mai 20:44 pilotlog.txt
-rw-r--r--. 1 root root 4444 23. Mai 16:13 queuedata.json
-rw-r--r--. 1 root root 786 24. Mai 09:57 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 24. Mai 09:57 run_atlas
-rwx------. 1 4871 1028 14753 23. Mai 16:15 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 24. Mai 20:44 runtime_log
-rw-r--r--. 1 root root 7355 24. Mai 20:44 runtime_log.err
drwxrwx--x. 2 root root 4096 24. Mai 20:44 shared
-rw-r--r--. 1 root root 8714 24. Mai 09:57 start_atlas.sh
-rw-r--r--. 1 root root 16768 24. Mai 20:44 stderr.txt
-rw-r--r--. 1 root root 107 24. Mai 09:57 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 24. Mai 20:44 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
20:44:20 (14864): run_atlas exited; CPU time 38735.971237
20:44:20 (14864): called boinc_finish(0)
</stderr_txt>
]]>
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