| Name | JD5NDmuFtpunShfckohDCDFpABFKDmABFKDmO4cPDmABFKDmBMxGtn_1 |
| Workunit | 1900937 |
| Created | 29 May 2019, 5:04:04 UTC |
| Sent | 29 May 2019, 6:50:33 UTC |
| Report deadline | 5 Jun 2019, 6:50:33 UTC |
| Received | 29 May 2019, 18:31:24 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 11 hours 40 min 51 sec |
| CPU time | 12 hours 4 min 54 sec |
| Validate state | Valid |
| Credit | 194.63 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.92 GB |
| Peak swap size | 2.45 GB |
| Peak disk usage | 843.68 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
19:42:46 (21963): wrapper (7.7.26015): starting
19:42:46 (21963): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/22/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/22/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/22/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/22/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18099335._019988.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-05-30 05:41:45,700 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.61"
2019-05-30 05:41:45,700 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-30 05:41:45,702 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/22/PanDA_Pilot-4360875984/memory_monitor_summary.json
2019-05-30 05:41:45,703 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2129980, 'maxSwap': 0, 'totRCHAR': 1854802451, 'totRBYTES': 1668358144, 'totWCHAR': 121287963, 'totWBYTES': 132726784, 'maxVMEM': 3241160, 'maxPSS': 2119976}, 'Avg': {'avgRSS': 2076594, 'rateWCHAR': 2822, 'avgVMEM': 3174869, 'avgPSS': 2067738, 'rateRCHAR': 43161, 'avgSwap': 0, 'rateRBYTES': 38822, 'rateWBYTES': 3088}}
2019-05-30 05:41:45,703 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-30 05:41:45,703 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-30 05:41:45,703 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-30 05:41:45,703 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-30 05:41:45,703 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-05-30 05:41:45,703 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-05-30 05:41:45,704 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-30 05:41:45,704 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-05-30 05:41:45,704 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-05-30 05:41:45,704 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 43028 s
2019-05-30 05:41:45,704 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 30 s
2019-05-30 05:41:45,704 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-30 05:41:45,705 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-30 05:41:45,705 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/22/PanDA_Pilot-4360875984/pandatracerlog.txt (ignoring)
2019-05-30 05:41:45,706 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/22/PanDA_Pilot-4360875984/pilotlog.txt
2019-05-30 05:41:45,843 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-05-30 05:41:45,844 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-05-30 05:41:45,700 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.61 B/s (using 690 data points, chi2=-212069651647.239563)
2019-05-30 05:41:45,700 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.61"
2019-05-30 05:41:45,700 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-30 05:41:45,702 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/22/PanDA_Pilot-4360875984/memory_monitor_summary.json
2019-05-30 05:41:45,703 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2129980, 'maxSwap': 0, 'totRCHAR': 1854802451, 'totRBYTES': 1668358144, 'totWCHAR': 121287963, 'totWBYTES': 132726784, 'maxVMEM': 3241160, 'maxPSS': 2119976}, 'Avg': {'avgRSS': 2076594, 'rateWCHAR': 2822, 'avgVMEM': 3174869, 'avgPSS': 2067738, 'rateRCHAR': 43161, 'avgSwap': 0, 'rateRBYTES': 38822, 'rateWBYTES': 3088}}
2019-05-30 05:41:45,703 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-30 05:41:45,703 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-30 05:41:45,703 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-30 05:41:45,703 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-30 05:41:45,703 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-05-30 05:41:45,703 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-05-30 05:41:45,704 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-30 05:41:45,704 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-05-30 05:41:45,704 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-05-30 05:41:45,704 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 43028 s
2019-05-30 05:41:45,704 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 30 s
2019-05-30 05:41:45,704 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-30 05:41:45,705 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-30 05:41:45,705 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/22/PanDA_Pilot-4360875984/pandatracerlog.txt (ignoring)
2019-05-30 05:41:45,706 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/22/PanDA_Pilot-4360875984/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-05-30 05:41:45,846 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/22/heartbeat.json
2019-05-30 05:41:45,846 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4360875984 was dequeued from the monitored payloads queue
2019-05-30 05:41:46,872 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-30 05:41:46,872 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-05-30 05:41:46,872 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-30 05:41:46,873 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4360875984
2019-05-30 05:41:46,873 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18099335
2019-05-30 05:41:46,873 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-05-30 05:41:46,873 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-05-30 05:41:46,873 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-05-30 05:41:46,873 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-05-30 05:41:46,873 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-05-30 05:41:46,874 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-05-30 05:41:46,874 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-05-30 05:41:46,874 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-05-30 05:41:46,874 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 43144 s
2019-05-30 05:41:46,874 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-05-30 05:41:46,874 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-05-30 05:41:46,874 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 28144
2019-05-30 05:41:46,874 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-05-30 05:41:46,874 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-05-30 05:41:46,875 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-05-30 05:41:46,875 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-30 05:41:46,875 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-30 05:41:46,875 | INFO | retrieve | pilot.control.job | has_job_completed | job 4360875984 has completed
2019-05-30 05:41:46,875 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-05-30 05:41:46,875 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-05-30 05:41:56,922 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-05-30 05:41:56,922 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/22
2019-05-30 05:41:56,946 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14107541504 B)
2019-05-30 05:41:56,946 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-05-30 05:41:56,990 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-05-30 05:41:57,273 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-05-30 05:41:57,350 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-05-30 05:41:57,425 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-05-30 05:41:57,681 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-05-30 05:41:57,709 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-05-30 05:41:57,917 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-05-30 05:41:57,918 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-05-30 05:41:57,925 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-05-30 05:41:58,953 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-05-30 05:41:58,955 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-05-30 05:41:58,956 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-05-30 05:41:58,957 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-05-30 05:42:00,752 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-05-30 05:42:10,922 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-05-30 05:42:10,922 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-05-30 05:42:10,924 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-05-30 05:42:10,925 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-05-30 05:42:10,925 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=43159.86s
KernelTime=1110.55s
UserTime=43074.57s
CPUUsage=102%
MaxResidentMemory=2018136kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9579
MinorPageFaults=17315601
Swaps=0
ForcedSwitches=497390
WaitSwitches=22691317
Inputs=3337448
Outputs=317736
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 384812
drwxrwx--x. 7 root root 4096 30. Mai 07:42 .
drwxr-x--x. 25 root root 4096 29. Mai 19:42 ..
-rw-------. 1 root root 7252817 29. Mai 19:43 agis_ddmendpoints.json
-rw-------. 1 root root 4815367 29. Mai 19:43 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 29. Mai 19:42 .alrb
drwxr-xr-x. 3 root root 4096 29. Mai 19:42 APPS
-rw-------. 1 root root 550 29. Mai 19:42 .asetup
-rw-------. 1 root root 2986 29. Mai 19:44 .asetup.save
-rw-r--r--. 1 root root 0 29. Mai 19:42 boinc_lockfile
-rw-r--r--. 1 root root 8192 30. Mai 07:41 boinc_mmap_file
-rw-r--r--. 1 root root 537 30. Mai 07:41 boinc_task_state.xml
-rw-r--r--. 1 root root 376953096 29. Mai 19:42 EVNT.17323946._000383.pool.root.1
-rw-------. 1 root root 67497 30. Mai 07:41 heartbeat.json
-rw-r--r--. 1 root root 5470 29. Mai 19:42 init_data.xml
-rw-r--r--. 1 root root 249685 29. Mai 19:42 input.tar.gz
-rw-------. 1 root root 494 30. Mai 07:42 JD5NDmuFtpunShfckohDCDFpABFKDmABFKDmO4cPDmABFKDmBMxGtn.diag
-rw-r--r--. 1 root root 112 29. Mai 19:42 job.xml
-rw-------. 1 root root 1972928 30. Mai 07:42 log.18099335._019988.job.log.1
-rw-------. 1 root root 340244 30. Mai 07:41 log.18099335._019988.job.log.tgz.1
-rw-------. 1 root root 306 30. Mai 07:41 memory_monitor_summary.json
-rw-------. 1 root root 391 30. Mai 07:42 output.list
-rw-------. 1 4871 1028 2886 28. Mai 17:31 pandaJobData.out
drwxrwx---. 2 root root 4096 30. Mai 07:41 PanDA_Pilot-4360875984
drwxr-xr-x. 3 1700 1332 4096 20. Mai 09:54 pilot2
-rw-r--r--. 1 root root 240831 24. Mai 16:04 pilot2.tar.gz
-rw-------. 1 root root 1957840 30. Mai 07:42 pilotlog.txt
-rw-r--r--. 1 root root 4444 28. Mai 17:27 queuedata.json
-rw-r--r--. 1 root root 786 29. Mai 19:42 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 29. Mai 19:42 run_atlas
-rwx------. 1 4871 1028 14753 28. Mai 17:31 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 30. Mai 07:42 runtime_log
-rw-r--r--. 1 root root 7355 30. Mai 07:42 runtime_log.err
drwxrwx--x. 2 root root 4096 30. Mai 07:42 shared
-rw-r--r--. 1 root root 8714 29. Mai 19:42 start_atlas.sh
-rw-r--r--. 1 root root 16746 30. Mai 07:42 stderr.txt
-rw-r--r--. 1 root root 107 29. Mai 19:42 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 30. Mai 07:41 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
07:42:11 (21963): run_atlas exited; CPU time 43075.037598
07:42:11 (21963): called boinc_finish(0)
</stderr_txt>
]]>
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