| Name | w5hNDmf7OqunShfckohDCDFpABFKDmABFKDmRDsQDmABFKDmVw3wIm_0 |
| Workunit | 1901325 |
| Created | 30 May 2019, 1:33:29 UTC |
| Sent | 31 May 2019, 12:13:07 UTC |
| Report deadline | 7 Jun 2019, 12:13:07 UTC |
| Received | 31 May 2019, 22:04:00 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 9 hours 50 min 53 sec |
| CPU time | 10 hours 9 min 8 sec |
| Validate state | Valid |
| Credit | 164.09 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.44 GB |
| Peak disk usage | 837.13 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
02:41:11 (20821): wrapper (7.7.26015): starting
02:41:11 (20821): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/27/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/27/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/27/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/27/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18099268._037724.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-01 10:46:39,026 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=4.13"
2019-06-01 10:46:39,026 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-01 10:46:39,028 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/27/PanDA_Pilot-4363705408/memory_monitor_summary.json
2019-06-01 10:46:39,029 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2114100, 'maxSwap': 0, 'totRCHAR': 1591151408, 'totRBYTES': 1633943552, 'totWCHAR': 110596650, 'totWBYTES': 120426496, 'maxVMEM': 3219052, 'maxPSS': 2105648}, 'Avg': {'avgRSS': 2071455, 'rateWCHAR': 3061, 'avgVMEM': 3170612, 'avgPSS': 2062687, 'rateRCHAR': 44040, 'avgSwap': 0, 'rateRBYTES': 45225, 'rateWBYTES': 3333}}
2019-06-01 10:46:39,029 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-01 10:46:39,029 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-01 10:46:39,029 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-01 10:46:39,029 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-01 10:46:39,030 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-06-01 10:46:39,030 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-01 10:46:39,030 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-01 10:46:39,030 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-01 10:46:39,030 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-01 10:46:39,030 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 36208 s
2019-06-01 10:46:39,030 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-06-01 10:46:39,030 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-01 10:46:39,030 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-01 10:46:39,031 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/27/PanDA_Pilot-4363705408/pandatracerlog.txt (ignoring)
2019-06-01 10:46:39,031 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/27/PanDA_Pilot-4363705408/pilotlog.txt
2019-06-01 10:46:39,165 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-01 10:46:39,241 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-01 10:46:39,026 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 4.13 B/s (using 582 data points, chi2=-18923193001.339287)
2019-06-01 10:46:39,026 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=4.13"
2019-06-01 10:46:39,026 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-01 10:46:39,028 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/27/PanDA_Pilot-4363705408/memory_monitor_summary.json
2019-06-01 10:46:39,029 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2114100, 'maxSwap': 0, 'totRCHAR': 1591151408, 'totRBYTES': 1633943552, 'totWCHAR': 110596650, 'totWBYTES': 120426496, 'maxVMEM': 3219052, 'maxPSS': 2105648}, 'Avg': {'avgRSS': 2071455, 'rateWCHAR': 3061, 'avgVMEM': 3170612, 'avgPSS': 2062687, 'rateRCHAR': 44040, 'avgSwap': 0, 'rateRBYTES': 45225, 'rateWBYTES': 3333}}
2019-06-01 10:46:39,029 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-01 10:46:39,029 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-01 10:46:39,029 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-01 10:46:39,029 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-01 10:46:39,030 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-06-01 10:46:39,030 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-01 10:46:39,030 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-01 10:46:39,030 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-01 10:46:39,030 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-01 10:46:39,030 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 36208 s
2019-06-01 10:46:39,030 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-06-01 10:46:39,030 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-01 10:46:39,030 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-01 10:46:39,031 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/27/PanDA_Pilot-4363705408/pandatracerlog.txt (ignoring)
2019-06-01 10:46:39,031 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/27/PanDA_Pilot-4363705408/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-01 10:46:39,245 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/27/heartbeat.json
2019-06-01 10:46:39,245 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4363705408 was dequeued from the monitored payloads queue
2019-06-01 10:46:40,289 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-01 10:46:40,291 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-01 10:46:40,291 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-01 10:46:40,291 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4363705408
2019-06-01 10:46:40,291 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18099268
2019-06-01 10:46:40,291 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-01 10:46:40,291 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-01 10:46:40,292 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-01 10:46:40,292 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-01 10:46:40,292 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-01 10:46:40,292 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-01 10:46:40,292 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-01 10:46:40,292 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-01 10:46:40,293 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 36311 s
2019-06-01 10:46:40,293 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-06-01 10:46:40,293 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-01 10:46:40,293 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 27003
2019-06-01 10:46:40,293 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-01 10:46:40,300 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-01 10:46:40,300 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-01 10:46:40,300 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-01 10:46:40,301 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-01 10:46:40,301 | INFO | retrieve | pilot.control.job | has_job_completed | job 4363705408 has completed
2019-06-01 10:46:40,301 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-01 10:46:40,301 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-01 10:46:50,342 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-01 10:46:50,343 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/27
2019-06-01 10:46:50,369 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14352908288 B)
2019-06-01 10:46:50,372 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-01 10:46:50,373 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-01 10:46:50,373 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-01 10:46:50,411 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-01 10:46:50,595 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-01 10:46:50,636 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-01 10:46:50,797 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-01 10:46:51,065 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-01 10:46:51,312 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-01 10:46:51,377 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-01 10:46:51,377 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-01 10:46:52,091 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-01 10:46:52,295 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-01 10:46:52,296 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-01 10:46:55,117 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-01 10:47:18,508 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-06-01 10:47:18,509 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-01 10:47:18,509 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-01 10:47:18,510 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-01 10:47:18,510 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=36353.43s
KernelTime=866.71s
UserTime=36257.48s
CPUUsage=102%
MaxResidentMemory=2001692kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9591
MinorPageFaults=15181980
Swaps=0
ForcedSwitches=392519
WaitSwitches=18253847
Inputs=3332904
Outputs=291584
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 383496
drwxrwx--x. 7 root root 4096 1. Jun 12:47 .
drwxr-x--x. 30 root root 4096 1. Jun 02:41 ..
-rw-------. 1 root root 7284719 1. Jun 02:41 agis_ddmendpoints.json
-rw-------. 1 root root 4800629 1. Jun 02:41 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 1. Jun 02:41 .alrb
drwxr-xr-x. 3 root root 4096 1. Jun 02:41 APPS
-rw-------. 1 root root 550 1. Jun 02:41 .asetup
-rw-------. 1 root root 2986 1. Jun 02:42 .asetup.save
-rw-r--r--. 1 root root 0 1. Jun 02:41 boinc_lockfile
-rw-r--r--. 1 root root 8192 1. Jun 12:47 boinc_mmap_file
-rw-r--r--. 1 root root 537 1. Jun 12:46 boinc_task_state.xml
-rw-r--r--. 1 root root 376239005 1. Jun 02:41 EVNT.17323929._000616.pool.root.1
-rw-------. 1 root root 47918 1. Jun 12:46 heartbeat.json
-rw-r--r--. 1 root root 5470 1. Jun 02:41 init_data.xml
-rw-r--r--. 1 root root 249679 1. Jun 02:41 input.tar.gz
-rw-r--r--. 1 root root 112 1. Jun 02:41 job.xml
-rw-------. 1 root root 1670215 1. Jun 12:47 log.18099268._037724.job.log.1
-rw-------. 1 root root 314165 1. Jun 12:46 log.18099268._037724.job.log.tgz.1
-rw-------. 1 root root 306 1. Jun 12:45 memory_monitor_summary.json
-rw-------. 1 root root 391 1. Jun 12:47 output.list
-rw-------. 1 4871 1028 2886 30. Mai 03:33 pandaJobData.out
drwxrwx---. 2 root root 4096 1. Jun 12:46 PanDA_Pilot-4363705408
drwxr-xr-x. 3 1700 1332 4096 20. Mai 09:54 pilot2
-rw-r--r--. 1 root root 240831 24. Mai 16:04 pilot2.tar.gz
-rw-------. 1 root root 1655127 1. Jun 12:47 pilotlog.txt
-rw-r--r--. 1 root root 4444 30. Mai 03:30 queuedata.json
-rw-r--r--. 1 root root 786 1. Jun 02:41 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 1. Jun 02:41 run_atlas
-rwx------. 1 4871 1028 14753 30. Mai 03:33 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 1. Jun 12:47 runtime_log
-rw-r--r--. 1 root root 7355 1. Jun 12:47 runtime_log.err
drwxrwx--x. 2 root root 4096 1. Jun 12:47 shared
-rw-r--r--. 1 root root 8714 1. Jun 02:41 start_atlas.sh
-rw-r--r--. 1 root root 16744 1. Jun 12:47 stderr.txt
-rw-------. 1 root root 493 1. Jun 12:47 w5hNDmf7OqunShfckohDCDFpABFKDmABFKDmRDsQDmABFKDmVw3wIm.diag
-rw-r--r--. 1 root root 107 1. Jun 02:41 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 1. Jun 12:47 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
12:47:19 (20821): run_atlas exited; CPU time 36258.510868
12:47:19 (20821): called boinc_finish(0)
</stderr_txt>
]]>
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