| Name | 2zRMDm60JqunShfckohDCDFpABFKDmABFKDmDZfQDmABFKDmc2Z0Fo_1 |
| Workunit | 1901290 |
| Created | 30 May 2019, 4:08:59 UTC |
| Sent | 30 May 2019, 5:09:24 UTC |
| Report deadline | 6 Jun 2019, 5:09:24 UTC |
| Received | 30 May 2019, 15:25:52 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 16 min 28 sec |
| CPU time | 10 hours 36 min 57 sec |
| Validate state | Valid |
| Credit | 171.20 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.46 GB |
| Peak disk usage | 841.39 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
18:42:46 (4587): wrapper (7.7.26015): starting
18:42:46 (4587): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/24/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/24/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/24/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/24/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18099229._049105.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-05-31 03:13:52,850 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-31 03:13:52,852 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/24/PanDA_Pilot-4363391962/memory_monitor_summary.json
2019-05-31 03:13:52,854 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2116840, 'maxSwap': 0, 'totRCHAR': 1748528604, 'totRBYTES': 1667543040, 'totWCHAR': 117768222, 'totWBYTES': 127836160, 'maxVMEM': 3244020, 'maxPSS': 2108392}, 'Avg': {'avgRSS': 2073572, 'rateWCHAR': 3122, 'avgVMEM': 3177107, 'avgPSS': 2064978, 'rateRCHAR': 46360, 'avgSwap': 0, 'rateRBYTES': 44213, 'rateWBYTES': 3389}}
2019-05-31 03:13:52,854 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-31 03:13:52,854 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-31 03:13:52,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-31 03:13:52,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-31 03:13:52,855 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-05-31 03:13:52,855 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-05-31 03:13:52,855 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-31 03:13:52,855 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-05-31 03:13:52,855 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-05-31 03:13:52,855 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 37760 s
2019-05-31 03:13:52,855 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 27 s
2019-05-31 03:13:52,855 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-31 03:13:52,856 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-31 03:13:52,857 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/24/PanDA_Pilot-4363391962/pandatracerlog.txt (ignoring)
2019-05-31 03:13:52,857 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/24/PanDA_Pilot-4363391962/pilotlog.txt
2019-05-31 03:13:52,986 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-05-31 03:13:53,059 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-05-31 03:13:52,849 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.28 B/s (using 607 data points, chi2=681170429495.078735)
2019-05-31 03:13:52,850 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.28"
2019-05-31 03:13:52,850 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-31 03:13:52,852 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/24/PanDA_Pilot-4363391962/memory_monitor_summary.json
2019-05-31 03:13:52,854 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2116840, 'maxSwap': 0, 'totRCHAR': 1748528604, 'totRBYTES': 1667543040, 'totWCHAR': 117768222, 'totWBYTES': 127836160, 'maxVMEM': 3244020, 'maxPSS': 2108392}, 'Avg': {'avgRSS': 2073572, 'rateWCHAR': 3122, 'avgVMEM': 3177107, 'avgPSS': 2064978, 'rateRCHAR': 46360, 'avgSwap': 0, 'rateRBYTES': 44213, 'rateWBYTES': 3389}}
2019-05-31 03:13:52,854 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-31 03:13:52,854 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-31 03:13:52,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-31 03:13:52,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-31 03:13:52,855 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-05-31 03:13:52,855 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-05-31 03:13:52,855 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-31 03:13:52,855 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-05-31 03:13:52,855 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-05-31 03:13:52,855 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 37760 s
2019-05-31 03:13:52,855 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 27 s
2019-05-31 03:13:52,855 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-31 03:13:52,856 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-31 03:13:52,857 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/24/PanDA_Pilot-4363391962/pandatracerlog.txt (ignoring)
2019-05-31 03:13:52,857 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/24/PanDA_Pilot-4363391962/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-05-31 03:13:53,063 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/24/heartbeat.json
2019-05-31 03:13:53,067 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4363391962 was dequeued from the monitored payloads queue
2019-05-31 03:13:54,175 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-31 03:13:54,175 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-05-31 03:13:54,175 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-31 03:13:54,175 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4363391962
2019-05-31 03:13:54,175 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18099229
2019-05-31 03:13:54,175 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-05-31 03:13:54,175 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-05-31 03:13:54,176 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-05-31 03:13:54,176 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-05-31 03:13:54,176 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-05-31 03:13:54,176 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-05-31 03:13:54,176 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-05-31 03:13:54,176 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-05-31 03:13:54,176 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 37983 s
2019-05-31 03:13:54,176 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-05-31 03:13:54,176 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-05-31 03:13:54,177 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 10828
2019-05-31 03:13:54,177 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-05-31 03:13:54,177 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-05-31 03:13:54,177 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-05-31 03:13:54,177 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-31 03:13:54,177 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-31 03:13:54,177 | INFO | retrieve | pilot.control.job | has_job_completed | job 4363391962 has completed
2019-05-31 03:13:54,177 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-05-31 03:13:54,177 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-05-31 03:14:04,130 | INFO | monitor | pilot.control.monitor | control | 37845 s have passed since pilot start
2019-05-31 03:14:04,216 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-05-31 03:14:04,216 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/24
2019-05-31 03:14:04,240 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14162067456 B)
2019-05-31 03:14:04,241 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-05-31 03:14:04,259 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-05-31 03:14:04,378 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-05-31 03:14:04,561 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-05-31 03:14:04,600 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-05-31 03:14:04,803 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-05-31 03:14:04,804 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-05-31 03:14:04,870 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-05-31 03:14:05,082 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-05-31 03:14:05,137 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-05-31 03:14:05,840 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-05-31 03:14:05,841 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-05-31 03:14:06,157 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-05-31 03:14:06,157 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-05-31 03:14:07,999 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-05-31 03:14:12,121 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s)
2019-05-31 03:14:12,123 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-05-31 03:14:12,124 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-05-31 03:14:12,124 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-05-31 03:14:12,124 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=37879.03s
KernelTime=1041.60s
UserTime=37923.54s
CPUUsage=102%
MaxResidentMemory=2022040kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9571
MinorPageFaults=16253941
Swaps=0
ForcedSwitches=538917
WaitSwitches=20918220
Inputs=3336528
Outputs=314016
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 384100
drwxrwx--x. 7 root root 4096 31. Mai 05:14 .
drwxr-x--x. 27 root root 4096 30. Mai 18:42 ..
-rw-------. 1 root root 494 31. Mai 05:14 2zRMDm60JqunShfckohDCDFpABFKDmABFKDmDZfQDmABFKDmc2Z0Fo.diag
-rw-------. 1 root root 7284719 30. Mai 18:43 agis_ddmendpoints.json
-rw-------. 1 root root 4820043 30. Mai 18:43 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 30. Mai 18:42 .alrb
drwxr-xr-x. 3 root root 4096 30. Mai 18:42 APPS
-rw-------. 1 root root 550 30. Mai 18:43 .asetup
-rw-------. 1 root root 2986 30. Mai 18:44 .asetup.save
-rw-r--r--. 1 root root 0 30. Mai 18:42 boinc_lockfile
-rw-r--r--. 1 root root 8192 31. Mai 05:14 boinc_mmap_file
-rw-r--r--. 1 root root 537 31. Mai 05:13 boinc_task_state.xml
-rw-r--r--. 1 root root 376696365 30. Mai 18:42 EVNT.17323923._000937.pool.root.1
-rw-------. 1 root root 50380 31. Mai 05:13 heartbeat.json
-rw-r--r--. 1 root root 5470 30. Mai 18:42 init_data.xml
-rw-r--r--. 1 root root 249686 30. Mai 18:42 input.tar.gz
-rw-r--r--. 1 root root 112 30. Mai 18:42 job.xml
-rw-------. 1 root root 1738239 31. Mai 05:14 log.18099229._049105.job.log.1
-rw-------. 1 root root 320218 31. Mai 05:13 log.18099229._049105.job.log.tgz.1
-rw-------. 1 root root 306 31. Mai 05:13 memory_monitor_summary.json
-rw-------. 1 root root 391 31. Mai 05:14 output.list
-rw-------. 1 4871 1028 2886 29. Mai 22:06 pandaJobData.out
drwxrwx---. 2 root root 4096 31. Mai 05:13 PanDA_Pilot-4363391962
drwxr-xr-x. 3 1700 1332 4096 20. Mai 09:54 pilot2
-rw-r--r--. 1 root root 240831 24. Mai 16:04 pilot2.tar.gz
-rw-------. 1 root root 1723151 31. Mai 05:14 pilotlog.txt
-rw-r--r--. 1 root root 4444 29. Mai 22:06 queuedata.json
-rw-r--r--. 1 root root 786 30. Mai 18:42 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 30. Mai 18:42 run_atlas
-rwx------. 1 4871 1028 14753 29. Mai 22:06 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 31. Mai 05:14 runtime_log
-rw-r--r--. 1 root root 7355 31. Mai 05:14 runtime_log.err
drwxrwx--x. 2 root root 4096 31. Mai 05:14 shared
-rw-r--r--. 1 root root 8714 30. Mai 18:42 start_atlas.sh
-rw-r--r--. 1 root root 16745 31. Mai 05:14 stderr.txt
-rw-r--r--. 1 root root 107 30. Mai 18:42 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 31. Mai 05:13 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
05:14:13 (4587): run_atlas exited; CPU time 37924.221641
05:14:13 (4587): called boinc_finish(0)
</stderr_txt>
]]>
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