| Name | vjLKDm3kZqunShfckohDCDFpABFKDmABFKDmdZHRDmABFKDmsJX6Fm_0 |
| Workunit | 1901373 |
| Created | 30 May 2019, 12:55:12 UTC |
| Sent | 30 May 2019, 15:25:52 UTC |
| Report deadline | 6 Jun 2019, 15:25:52 UTC |
| Received | 31 May 2019, 1:47:26 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 21 min 34 sec |
| CPU time | 10 hours 40 min 52 sec |
| Validate state | Valid |
| Credit | 172.62 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.44 GB |
| Peak disk usage | 838.64 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
05:17:36 (10003): wrapper (7.7.26015): starting
05:17:36 (10003): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/25/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/25/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/25/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/25/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18099307._036993.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-05-31 13:53:52,396 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.81"
2019-05-31 13:53:52,396 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-31 13:53:52,397 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/25/PanDA_Pilot-4364286066/memory_monitor_summary.json
2019-05-31 13:53:52,398 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2111744, 'maxSwap': 0, 'totRCHAR': 1639886823, 'totRBYTES': 1634512896, 'totWCHAR': 115661588, 'totWBYTES': 125935616, 'maxVMEM': 3222540, 'maxPSS': 2103296}, 'Avg': {'avgRSS': 2074284, 'rateWCHAR': 3046, 'avgVMEM': 3175032, 'avgPSS': 2065534, 'rateRCHAR': 43187, 'avgSwap': 0, 'rateRBYTES': 43046, 'rateWBYTES': 3316}}
2019-05-31 13:53:52,398 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-31 13:53:52,398 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-31 13:53:52,399 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-31 13:53:52,399 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-31 13:53:52,399 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-05-31 13:53:52,399 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-05-31 13:53:52,399 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-31 13:53:52,399 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-05-31 13:53:52,399 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-05-31 13:53:52,399 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38064 s
2019-05-31 13:53:52,399 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 28 s
2019-05-31 13:53:52,400 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-31 13:53:52,400 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-31 13:53:52,400 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/25/PanDA_Pilot-4364286066/pandatracerlog.txt (ignoring)
2019-05-31 13:53:52,400 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/25/PanDA_Pilot-4364286066/pilotlog.txt
2019-05-31 13:53:52,518 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-05-31 13:53:52,588 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-05-31 13:53:52,395 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.81 B/s (using 612 data points, chi2=-36730081127.376816)
2019-05-31 13:53:52,396 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.81"
2019-05-31 13:53:52,396 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-05-31 13:53:52,397 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/25/PanDA_Pilot-4364286066/memory_monitor_summary.json
2019-05-31 13:53:52,398 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2111744, 'maxSwap': 0, 'totRCHAR': 1639886823, 'totRBYTES': 1634512896, 'totWCHAR': 115661588, 'totWBYTES': 125935616, 'maxVMEM': 3222540, 'maxPSS': 2103296}, 'Avg': {'avgRSS': 2074284, 'rateWCHAR': 3046, 'avgVMEM': 3175032, 'avgPSS': 2065534, 'rateRCHAR': 43187, 'avgSwap': 0, 'rateRBYTES': 43046, 'rateWBYTES': 3316}}
2019-05-31 13:53:52,398 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-05-31 13:53:52,398 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-05-31 13:53:52,399 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-31 13:53:52,399 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-05-31 13:53:52,399 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-05-31 13:53:52,399 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-05-31 13:53:52,399 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-05-31 13:53:52,399 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-05-31 13:53:52,399 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-05-31 13:53:52,399 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38064 s
2019-05-31 13:53:52,399 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 28 s
2019-05-31 13:53:52,400 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-05-31 13:53:52,400 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-05-31 13:53:52,400 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/25/PanDA_Pilot-4364286066/pandatracerlog.txt (ignoring)
2019-05-31 13:53:52,400 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/25/PanDA_Pilot-4364286066/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-05-31 13:53:52,592 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/25/heartbeat.json
2019-05-31 13:53:52,592 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4364286066 was dequeued from the monitored payloads queue
2019-05-31 13:53:53,606 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-31 13:53:53,607 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-05-31 13:53:53,607 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-31 13:53:53,607 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4364286066
2019-05-31 13:53:53,607 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18099307
2019-05-31 13:53:53,607 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-05-31 13:53:53,608 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-05-31 13:53:53,613 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-05-31 13:53:53,613 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-05-31 13:53:53,614 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-05-31 13:53:53,614 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-05-31 13:53:53,614 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-05-31 13:53:53,615 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-05-31 13:53:53,615 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 38209 s
2019-05-31 13:53:53,616 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-05-31 13:53:53,616 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-05-31 13:53:53,616 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 16191
2019-05-31 13:53:53,617 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-05-31 13:53:53,617 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-05-31 13:53:53,617 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-05-31 13:53:53,617 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-05-31 13:53:53,617 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-05-31 13:53:53,617 | INFO | retrieve | pilot.control.job | has_job_completed | job 4364286066 has completed
2019-05-31 13:53:53,617 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-05-31 13:53:53,617 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-05-31 13:54:03,635 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-05-31 13:54:03,636 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/25
2019-05-31 13:54:03,659 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14301528064 B)
2019-05-31 13:54:03,659 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-05-31 13:54:03,787 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-05-31 13:54:03,989 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-05-31 13:54:03,990 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-05-31 13:54:04,187 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-05-31 13:54:04,336 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-05-31 13:54:04,336 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-05-31 13:54:04,604 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-05-31 13:54:04,638 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-05-31 13:54:05,052 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-05-31 13:54:05,055 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-05-31 13:54:05,417 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-05-31 13:54:05,729 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-05-31 13:54:05,730 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-05-31 13:54:08,610 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-05-31 13:54:25,468 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-05-31 13:54:25,470 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-05-31 13:54:25,470 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-05-31 13:54:25,471 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-05-31 13:54:25,471 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=38198.48s
KernelTime=904.17s
UserTime=38142.81s
CPUUsage=102%
MaxResidentMemory=2000260kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9573
MinorPageFaults=15698627
Swaps=0
ForcedSwitches=397640
WaitSwitches=18950619
Inputs=3336744
Outputs=303784
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 382996
drwxrwx--x. 7 root root 4096 31. Mai 15:54 .
drwxr-x--x. 28 root root 4096 31. Mai 05:17 ..
-rw-------. 1 root root 7284719 31. Mai 05:18 agis_ddmendpoints.json
-rw-------. 1 root root 4801684 31. Mai 05:18 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 31. Mai 05:17 .alrb
drwxr-xr-x. 3 root root 4096 31. Mai 05:17 APPS
-rw-------. 1 root root 550 31. Mai 05:17 .asetup
-rw-------. 1 root root 2986 31. Mai 05:18 .asetup.save
-rw-r--r--. 1 root root 0 31. Mai 05:17 boinc_lockfile
-rw-r--r--. 1 root root 8192 31. Mai 15:54 boinc_mmap_file
-rw-r--r--. 1 root root 537 31. Mai 15:53 boinc_task_state.xml
-rw-r--r--. 1 root root 375535403 31. Mai 05:17 EVNT.17323937._000680.pool.root.1
-rw-------. 1 root root 57291 31. Mai 15:53 heartbeat.json
-rw-r--r--. 1 root root 5470 31. Mai 05:17 init_data.xml
-rw-r--r--. 1 root root 249673 31. Mai 05:17 input.tar.gz
-rw-r--r--. 1 root root 112 31. Mai 05:17 job.xml
-rw-------. 1 root root 1757110 31. Mai 15:54 log.18099307._036993.job.log.1
-rw-------. 1 root root 324576 31. Mai 15:53 log.18099307._036993.job.log.tgz.1
-rw-------. 1 root root 306 31. Mai 15:53 memory_monitor_summary.json
-rw-------. 1 root root 391 31. Mai 15:54 output.list
-rw-------. 1 4871 1028 2886 30. Mai 14:54 pandaJobData.out
drwxrwx---. 2 root root 4096 31. Mai 15:53 PanDA_Pilot-4364286066
drwxr-xr-x. 3 1700 1332 4096 20. Mai 09:54 pilot2
-rw-r--r--. 1 root root 240831 24. Mai 16:04 pilot2.tar.gz
-rw-------. 1 root root 1742022 31. Mai 15:54 pilotlog.txt
-rw-r--r--. 1 root root 4444 30. Mai 14:54 queuedata.json
-rw-r--r--. 1 root root 786 31. Mai 05:17 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 31. Mai 05:17 run_atlas
-rwx------. 1 4871 1028 14753 30. Mai 14:54 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 31. Mai 15:54 runtime_log
-rw-r--r--. 1 root root 7355 31. Mai 15:54 runtime_log.err
drwxrwx--x. 2 root root 4096 31. Mai 15:54 shared
-rw-r--r--. 1 root root 8714 31. Mai 05:17 start_atlas.sh
-rw-r--r--. 1 root root 16744 31. Mai 15:54 stderr.txt
-rw-------. 1 root root 493 31. Mai 15:54 vjLKDm3kZqunShfckohDCDFpABFKDmABFKDmdZHRDmABFKDmsJX6Fm.diag
-rw-r--r--. 1 root root 107 31. Mai 05:17 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 31. Mai 15:54 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
15:54:26 (10003): run_atlas exited; CPU time 38143.286339
15:54:26 (10003): called boinc_finish(0)
</stderr_txt>
]]>
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