| Name | FEJLDmN05qunShfckohDCDFpABFKDmABFKDmPgYSDmABFKDmPlSZDm_1 |
| Workunit | 1901627 |
| Created | 1 Jun 2019, 0:18:13 UTC |
| Sent | 1 Jun 2019, 12:14:48 UTC |
| Report deadline | 8 Jun 2019, 12:14:48 UTC |
| Received | 1 Jun 2019, 23:13:15 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 58 min 27 sec |
| CPU time | 11 hours 19 min 50 sec |
| Validate state | Valid |
| Credit | 182.86 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.44 GB |
| Peak disk usage | 889.14 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
03:26:05 (2391): wrapper (7.7.26015): starting
03:26:05 (2391): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/29/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/29/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/29/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/29/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18099307._047743.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-02 12:41:01,935 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=2.92"
2019-06-02 12:41:01,935 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-02 12:41:01,945 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/29/PanDA_Pilot-4366337011/memory_monitor_summary.json
2019-06-02 12:41:01,947 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2112172, 'maxSwap': 0, 'totRCHAR': 1704398617, 'totRBYTES': 1636335616, 'totWCHAR': 121279245, 'totWBYTES': 132206592, 'maxVMEM': 3231336, 'maxPSS': 2103720}, 'Avg': {'avgRSS': 2077231, 'rateWCHAR': 3020, 'avgVMEM': 3179942, 'avgPSS': 2068475, 'rateRCHAR': 42446, 'avgSwap': 0, 'rateRBYTES': 40751, 'rateWBYTES': 3292}}
2019-06-02 12:41:01,947 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-02 12:41:01,947 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-02 12:41:01,948 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-02 12:41:01,948 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-02 12:41:01,948 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-02 12:41:01,948 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-02 12:41:01,948 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-02 12:41:01,948 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-02 12:41:01,949 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-02 12:41:01,949 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 40294 s
2019-06-02 12:41:01,949 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-06-02 12:41:01,949 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-02 12:41:01,949 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-02 12:41:01,949 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/29/PanDA_Pilot-4366337011/pandatracerlog.txt (ignoring)
2019-06-02 12:41:01,950 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/29/PanDA_Pilot-4366337011/pilotlog.txt
2019-06-02 12:41:04,488 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-02 12:41:04,489 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-02 12:41:01,935 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 2.92 B/s (using 647 data points, chi2=-38073445593.375420)
2019-06-02 12:41:01,935 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=2.92"
2019-06-02 12:41:01,935 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-02 12:41:01,945 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/29/PanDA_Pilot-4366337011/memory_monitor_summary.json
2019-06-02 12:41:01,947 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2112172, 'maxSwap': 0, 'totRCHAR': 1704398617, 'totRBYTES': 1636335616, 'totWCHAR': 121279245, 'totWBYTES': 132206592, 'maxVMEM': 3231336, 'maxPSS': 2103720}, 'Avg': {'avgRSS': 2077231, 'rateWCHAR': 3020, 'avgVMEM': 3179942, 'avgPSS': 2068475, 'rateRCHAR': 42446, 'avgSwap': 0, 'rateRBYTES': 40751, 'rateWBYTES': 3292}}
2019-06-02 12:41:01,947 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-02 12:41:01,947 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-02 12:41:01,948 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-02 12:41:01,948 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-02 12:41:01,948 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-02 12:41:01,948 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-02 12:41:01,948 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-02 12:41:01,948 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-02 12:41:01,949 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-02 12:41:01,949 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 40294 s
2019-06-02 12:41:01,949 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-06-02 12:41:01,949 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-02 12:41:01,949 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-02 12:41:01,949 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/29/PanDA_Pilot-4366337011/pandatracerlog.txt (ignoring)
2019-06-02 12:41:01,950 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/29/PanDA_Pilot-4366337011/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-02 12:41:04,491 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/29/heartbeat.json
2019-06-02 12:41:04,491 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4366337011 was dequeued from the monitored payloads queue
2019-06-02 12:41:05,904 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-02 12:41:05,904 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-02 12:41:05,904 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-02 12:41:05,905 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4366337011
2019-06-02 12:41:05,905 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18099307
2019-06-02 12:41:05,905 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-02 12:41:05,905 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-02 12:41:05,905 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-02 12:41:05,905 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-02 12:41:05,905 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-02 12:41:05,905 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-02 12:41:05,905 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-02 12:41:05,906 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-02 12:41:05,906 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 40491 s
2019-06-02 12:41:05,906 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-06-02 12:41:05,906 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-02 12:41:05,906 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 8647
2019-06-02 12:41:05,906 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-02 12:41:05,906 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-02 12:41:05,906 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-02 12:41:05,906 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-02 12:41:05,907 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-02 12:41:05,907 | INFO | retrieve | pilot.control.job | has_job_completed | job 4366337011 has completed
2019-06-02 12:41:05,907 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-02 12:41:05,907 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-02 12:41:15,955 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-02 12:41:15,957 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/29
2019-06-02 12:41:16,024 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14299430912 B)
2019-06-02 12:41:16,025 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-02 12:41:16,075 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-02 12:41:16,100 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-02 12:41:16,290 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-02 12:41:16,432 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-02 12:41:16,446 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-02 12:41:16,447 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-02 12:41:16,447 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-02 12:41:16,783 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-02 12:41:17,613 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-02 12:41:17,613 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-02 12:41:17,615 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-02 12:41:17,615 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-02 12:41:19,189 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-02 12:41:22,234 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-02 12:41:45,770 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-06-02 12:41:45,771 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-02 12:41:45,771 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-02 12:41:45,772 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-02 12:41:45,772 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=40502.43s
KernelTime=976.73s
UserTime=40441.23s
CPUUsage=102%
MaxResidentMemory=2007644kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9601
MinorPageFaults=18446241
Swaps=0
ForcedSwitches=460067
WaitSwitches=20290488
Inputs=3340496
Outputs=425744
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 436224
drwxrwx--x. 7 root root 4096 2. Jun 14:41 .
drwxr-x--x. 32 root root 4096 2. Jun 03:26 ..
-rw-------. 1 root root 7284719 2. Jun 03:28 agis_ddmendpoints.json
-rw-------. 1 root root 4965031 2. Jun 03:28 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 2. Jun 03:26 .alrb
drwxr-xr-x. 3 root root 4096 2. Jun 03:26 APPS
-rw-------. 1 root root 550 2. Jun 03:26 .asetup
-rw-------. 1 root root 2986 2. Jun 03:28 .asetup.save
-rw-r--r--. 1 root root 0 2. Jun 03:26 boinc_lockfile
-rw-r--r--. 1 root root 8192 2. Jun 14:41 boinc_mmap_file
-rw-r--r--. 1 root root 537 2. Jun 14:40 boinc_task_state.xml
-rw-r--r--. 1 root root 373650692 2. Jun 03:26 EVNT.17323937._000878.pool.root.1
-rw-------. 1 root root 493 2. Jun 14:41 FEJLDmN05qunShfckohDCDFpABFKDmABFKDmPgYSDmABFKDmPlSZDm.diag
-rw-------. 1 root root 63842 2. Jun 14:41 heartbeat.json
-rw-r--r--. 1 root root 5470 2. Jun 03:26 init_data.xml
-rw-r--r--. 1 root root 247982 2. Jun 03:26 input.tar.gz
-rw-r--r--. 1 root root 112 2. Jun 03:26 job.xml
-rw-------. 1 root root 28637516 2. Jun 14:41 log.18099307._047743.job.log.1
-rw-------. 1 root root 2784932 2. Jun 14:40 log.18099307._047743.job.log.tgz.1
-rw-------. 1 root root 306 2. Jun 14:40 memory_monitor_summary.json
-rw-------. 1 root root 391 2. Jun 14:41 output.list
-rw-------. 1 4871 1028 2888 1. Jun 01:20 pandaJobData.out
drwxrwx---. 2 root root 4096 2. Jun 14:41 PanDA_Pilot-4366337011
drwxr-xr-x. 3 501 games 4096 29. Mai 14:16 pilot2
-rw-r--r--. 1 root root 238965 31. Mai 18:37 pilot2.tar.gz
-rw-------. 1 root root 28622427 2. Jun 14:41 pilotlog.txt
-rw-r--r--. 1 root root 4444 1. Jun 01:20 queuedata.json
-rw-r--r--. 1 root root 786 2. Jun 03:26 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 2. Jun 03:26 run_atlas
-rwx------. 1 4871 1028 14753 1. Jun 01:20 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 2. Jun 14:41 runtime_log
-rw-r--r--. 1 root root 7355 2. Jun 14:41 runtime_log.err
drwxrwx--x. 2 root root 4096 2. Jun 14:41 shared
-rw-r--r--. 1 root root 8714 2. Jun 03:26 start_atlas.sh
-rw-r--r--. 1 root root 16741 2. Jun 14:41 stderr.txt
-rw-r--r--. 1 root root 107 2. Jun 03:26 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 2. Jun 14:41 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
14:41:46 (2391): run_atlas exited; CPU time 40442.463810
14:41:46 (2391): called boinc_finish(0)
</stderr_txt>
]]>
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