| Name | oguMDmDA8qunShfckohDCDFpABFKDmABFKDmToeSDmABFKDmraZRPm_0 |
| Workunit | 1901652 |
| Created | 1 Jun 2019, 1:39:02 UTC |
| Sent | 1 Jun 2019, 1:41:45 UTC |
| Report deadline | 8 Jun 2019, 1:41:45 UTC |
| Received | 1 Jun 2019, 12:14:48 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 33 min 3 sec |
| CPU time | 10 hours 53 min 51 sec |
| Validate state | Valid |
| Credit | 175.80 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.45 GB |
| Peak disk usage | 891.30 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
16:34:14 (25860): wrapper (7.7.26015): starting
16:34:14 (25860): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/28/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/28/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/28/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/28/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18099335._039217.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-02 01:23:18,288 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.43"
2019-06-02 01:23:18,288 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-02 01:23:18,289 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/28/PanDA_Pilot-4366465293/memory_monitor_summary.json
2019-06-02 01:23:18,291 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2119292, 'maxSwap': 0, 'totRCHAR': 1661723040, 'totRBYTES': 1638100992, 'totWCHAR': 117855144, 'totWBYTES': 128327680, 'maxVMEM': 3233208, 'maxPSS': 2110758}, 'Avg': {'avgRSS': 2076423, 'rateWCHAR': 3047, 'avgVMEM': 3179028, 'avgPSS': 2067683, 'rateRCHAR': 42975, 'avgSwap': 0, 'rateRBYTES': 42364, 'rateWBYTES': 3318}}
2019-06-02 01:23:18,291 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-02 01:23:18,291 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-02 01:23:18,291 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-02 01:23:18,291 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-02 01:23:18,291 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-02 01:23:18,292 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-02 01:23:18,292 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-02 01:23:18,292 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-02 01:23:18,292 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-02 01:23:18,292 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38820 s
2019-06-02 01:23:18,292 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 28 s
2019-06-02 01:23:18,292 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-02 01:23:18,292 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-02 01:23:18,293 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/28/PanDA_Pilot-4366465293/pandatracerlog.txt (ignoring)
2019-06-02 01:23:18,293 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/28/PanDA_Pilot-4366465293/pilotlog.txt
2019-06-02 01:23:20,656 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-02 01:23:20,725 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-02 01:23:18,287 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.43 B/s (using 624 data points, chi2=-1411620913.332097)
2019-06-02 01:23:18,288 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.43"
2019-06-02 01:23:18,288 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-02 01:23:18,289 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/28/PanDA_Pilot-4366465293/memory_monitor_summary.json
2019-06-02 01:23:18,291 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2119292, 'maxSwap': 0, 'totRCHAR': 1661723040, 'totRBYTES': 1638100992, 'totWCHAR': 117855144, 'totWBYTES': 128327680, 'maxVMEM': 3233208, 'maxPSS': 2110758}, 'Avg': {'avgRSS': 2076423, 'rateWCHAR': 3047, 'avgVMEM': 3179028, 'avgPSS': 2067683, 'rateRCHAR': 42975, 'avgSwap': 0, 'rateRBYTES': 42364, 'rateWBYTES': 3318}}
2019-06-02 01:23:18,291 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-02 01:23:18,291 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-02 01:23:18,291 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-02 01:23:18,291 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-02 01:23:18,291 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-02 01:23:18,292 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-02 01:23:18,292 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-02 01:23:18,292 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-02 01:23:18,292 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-02 01:23:18,292 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38820 s
2019-06-02 01:23:18,292 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 28 s
2019-06-02 01:23:18,292 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-02 01:23:18,292 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-02 01:23:18,293 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/28/PanDA_Pilot-4366465293/pandatracerlog.txt (ignoring)
2019-06-02 01:23:18,293 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/28/PanDA_Pilot-4366465293/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-02 01:23:20,727 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/28/heartbeat.json
2019-06-02 01:23:20,727 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4366465293 was dequeued from the monitored payloads queue
2019-06-02 01:23:21,760 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-02 01:23:21,760 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-02 01:23:21,761 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-02 01:23:21,761 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4366465293
2019-06-02 01:23:21,761 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18099335
2019-06-02 01:23:21,762 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-02 01:23:21,763 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-02 01:23:21,763 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-02 01:23:21,763 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-02 01:23:21,763 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-02 01:23:21,763 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-02 01:23:21,763 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-02 01:23:21,763 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-02 01:23:21,764 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 38947 s
2019-06-02 01:23:21,764 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-06-02 01:23:21,764 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-02 01:23:21,764 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 32281
2019-06-02 01:23:21,764 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-02 01:23:21,764 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-02 01:23:21,764 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-02 01:23:21,764 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-02 01:23:21,764 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-02 01:23:21,764 | INFO | retrieve | pilot.control.job | has_job_completed | job 4366465293 has completed
2019-06-02 01:23:21,765 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-02 01:23:21,765 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-02 01:23:31,821 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-02 01:23:31,822 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/28
2019-06-02 01:23:31,846 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14285799424 B)
2019-06-02 01:23:31,847 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-02 01:23:31,849 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-02 01:23:31,856 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-02 01:23:32,022 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-02 01:23:32,023 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-02 01:23:32,118 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-02 01:23:32,118 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-02 01:23:32,267 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-02 01:23:32,541 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-02 01:23:32,619 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-02 01:23:33,298 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-02 01:23:33,301 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-02 01:23:33,919 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-02 01:23:33,920 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-02 01:23:34,972 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-02 01:23:35,419 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-06-02 01:23:35,420 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-02 01:23:35,421 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-02 01:23:35,421 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-02 01:23:35,421 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=38946.23s
KernelTime=935.85s
UserTime=38875.83s
CPUUsage=102%
MaxResidentMemory=2008944kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9620
MinorPageFaults=17942164
Swaps=0
ForcedSwitches=471068
WaitSwitches=19524080
Inputs=3347888
Outputs=412920
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 438356
drwxrwx--x. 7 root root 4096 2. Jun 03:23 .
drwxr-x--x. 31 root root 4096 1. Jun 16:34 ..
-rw-------. 1 root root 7284719 1. Jun 16:35 agis_ddmendpoints.json
-rw-------. 1 root root 4801373 1. Jun 16:34 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 1. Jun 16:34 .alrb
drwxr-xr-x. 3 root root 4096 1. Jun 16:34 APPS
-rw-------. 1 root root 550 1. Jun 16:34 .asetup
-rw-------. 1 root root 2986 1. Jun 16:35 .asetup.save
-rw-r--r--. 1 root root 0 1. Jun 16:34 boinc_lockfile
-rw-r--r--. 1 root root 8192 2. Jun 03:23 boinc_mmap_file
-rw-r--r--. 1 root root 537 2. Jun 03:22 boinc_task_state.xml
-rw-r--r--. 1 root root 378273447 1. Jun 16:34 EVNT.17323946._000754.pool.root.1
-rw-------. 1 root root 54937 2. Jun 03:23 heartbeat.json
-rw-r--r--. 1 root root 5470 1. Jun 16:34 init_data.xml
-rw-r--r--. 1 root root 247987 1. Jun 16:34 input.tar.gz
-rw-r--r--. 1 root root 112 1. Jun 16:34 job.xml
-rw-------. 1 root root 27551323 2. Jun 03:23 log.18099335._039217.job.log.1
-rw-------. 1 root root 2685232 2. Jun 03:23 log.18099335._039217.job.log.tgz.1
-rw-------. 1 root root 306 2. Jun 03:22 memory_monitor_summary.json
-rw-------. 1 root root 493 2. Jun 03:23 oguMDmDA8qunShfckohDCDFpABFKDmABFKDmToeSDmABFKDmraZRPm.diag
-rw-------. 1 root root 391 2. Jun 03:23 output.list
-rw-------. 1 4871 1028 2886 1. Jun 03:38 pandaJobData.out
drwxrwx---. 2 root root 4096 2. Jun 03:23 PanDA_Pilot-4366465293
drwxr-xr-x. 3 501 games 4096 29. Mai 14:16 pilot2
-rw-r--r--. 1 root root 238965 31. Mai 18:37 pilot2.tar.gz
-rw-------. 1 root root 27536234 2. Jun 03:23 pilotlog.txt
-rw-r--r--. 1 root root 4444 1. Jun 03:38 queuedata.json
-rw-r--r--. 1 root root 786 1. Jun 16:34 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 1. Jun 16:34 run_atlas
-rwx------. 1 4871 1028 14753 1. Jun 03:38 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 2. Jun 03:23 runtime_log
-rw-r--r--. 1 root root 7355 2. Jun 03:23 runtime_log.err
drwxrwx--x. 2 root root 4096 2. Jun 03:23 shared
-rw-r--r--. 1 root root 8714 1. Jun 16:34 start_atlas.sh
-rw-r--r--. 1 root root 16743 2. Jun 03:23 stderr.txt
-rw-r--r--. 1 root root 107 1. Jun 16:34 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 2. Jun 03:23 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
03:23:36 (25860): run_atlas exited; CPU time 38876.303903
03:23:36 (25860): called boinc_finish(0)
</stderr_txt>
]]>
©2024 CERN