| Name | Tw9MDmzjErunShfckohDCDFpABFKDmABFKDm7DvSDmABFKDmZxMASm_0 |
| Workunit | 1901700 |
| Created | 1 Jun 2019, 8:40:26 UTC |
| Sent | 1 Jun 2019, 23:13:15 UTC |
| Report deadline | 8 Jun 2019, 23:13:15 UTC |
| Received | 2 Jun 2019, 9:04:58 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 9 hours 51 min 43 sec |
| CPU time | 10 hours 11 min 32 sec |
| Validate state | Valid |
| Credit | 164.33 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.44 GB |
| Peak disk usage | 878.00 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
14:44:09 (11866): wrapper (7.7.26015): starting
14:44:09 (11866): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/30/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/30/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/30/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/30/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18099307._049574.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-02 22:50:31,850 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.47"
2019-06-02 22:50:31,850 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-02 22:50:31,851 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/30/PanDA_Pilot-4366950021/memory_monitor_summary.json
2019-06-02 22:50:31,853 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2113200, 'maxSwap': 0, 'totRCHAR': 1595432305, 'totRBYTES': 1636892672, 'totWCHAR': 109200080, 'totWBYTES': 119005184, 'maxVMEM': 3222676, 'maxPSS': 2104752}, 'Avg': {'avgRSS': 2077290, 'rateWCHAR': 3020, 'avgVMEM': 3177284, 'avgPSS': 2068510, 'rateRCHAR': 44136, 'avgSwap': 0, 'rateRBYTES': 45283, 'rateWBYTES': 3292}}
2019-06-02 22:50:31,853 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-02 22:50:31,853 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-02 22:50:31,853 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-02 22:50:31,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-02 22:50:31,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-02 22:50:31,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-02 22:50:31,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-02 22:50:31,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-02 22:50:31,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-02 22:50:31,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 36271 s
2019-06-02 22:50:31,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 30 s
2019-06-02 22:50:31,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-02 22:50:31,855 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-02 22:50:31,855 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/30/PanDA_Pilot-4366950021/pandatracerlog.txt (ignoring)
2019-06-02 22:50:31,856 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/30/PanDA_Pilot-4366950021/pilotlog.txt
2019-06-02 22:50:34,092 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-02 22:50:34,172 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-02 22:50:31,849 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.47 B/s (using 583 data points, chi2=-21066151503.119774)
2019-06-02 22:50:31,850 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.47"
2019-06-02 22:50:31,850 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-02 22:50:31,851 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/30/PanDA_Pilot-4366950021/memory_monitor_summary.json
2019-06-02 22:50:31,853 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2113200, 'maxSwap': 0, 'totRCHAR': 1595432305, 'totRBYTES': 1636892672, 'totWCHAR': 109200080, 'totWBYTES': 119005184, 'maxVMEM': 3222676, 'maxPSS': 2104752}, 'Avg': {'avgRSS': 2077290, 'rateWCHAR': 3020, 'avgVMEM': 3177284, 'avgPSS': 2068510, 'rateRCHAR': 44136, 'avgSwap': 0, 'rateRBYTES': 45283, 'rateWBYTES': 3292}}
2019-06-02 22:50:31,853 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-02 22:50:31,853 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-02 22:50:31,853 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-02 22:50:31,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-02 22:50:31,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-02 22:50:31,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-02 22:50:31,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-02 22:50:31,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-02 22:50:31,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-02 22:50:31,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 36271 s
2019-06-02 22:50:31,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 30 s
2019-06-02 22:50:31,854 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-02 22:50:31,855 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-02 22:50:31,855 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/30/PanDA_Pilot-4366950021/pandatracerlog.txt (ignoring)
2019-06-02 22:50:31,856 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/30/PanDA_Pilot-4366950021/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-02 22:50:34,176 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/30/heartbeat.json
2019-06-02 22:50:34,177 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4366950021 was dequeued from the monitored payloads queue
2019-06-02 22:50:35,177 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-02 22:50:35,178 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-02 22:50:35,178 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-02 22:50:35,179 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4366950021
2019-06-02 22:50:35,179 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18099307
2019-06-02 22:50:35,179 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-02 22:50:35,180 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-02 22:50:35,180 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-02 22:50:35,180 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-02 22:50:35,180 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-02 22:50:35,180 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-02 22:50:35,180 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-02 22:50:35,181 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-02 22:50:35,181 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 36428 s
2019-06-02 22:50:35,181 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-06-02 22:50:35,181 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-02 22:50:35,181 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 18050
2019-06-02 22:50:35,181 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-02 22:50:35,181 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-02 22:50:35,181 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-02 22:50:35,181 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-02 22:50:35,182 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-02 22:50:35,182 | INFO | retrieve | pilot.control.job | has_job_completed | job 4366950021 has completed
2019-06-02 22:50:35,182 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-02 22:50:35,182 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-02 22:50:45,233 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-02 22:50:45,233 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/30
2019-06-02 22:50:45,253 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14397997056 B)
2019-06-02 22:50:45,255 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-02 22:50:45,270 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-02 22:50:45,281 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-02 22:50:45,467 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-02 22:50:45,518 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-02 22:50:45,591 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-02 22:50:45,591 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-02 22:50:45,864 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-02 22:50:46,068 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-02 22:50:46,310 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-02 22:50:46,599 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-02 22:50:46,600 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-02 22:50:47,205 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-02 22:50:47,206 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-02 22:50:48,354 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-02 22:50:56,215 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-06-02 22:50:56,216 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-02 22:50:56,216 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-02 22:50:56,217 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-02 22:50:56,217 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=36401.99s
KernelTime=891.96s
UserTime=36370.90s
CPUUsage=102%
MaxResidentMemory=2000484kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9771
MinorPageFaults=16950924
Swaps=0
ForcedSwitches=402943
WaitSwitches=18472453
Inputs=3366896
Outputs=386656
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 431536
drwxrwx--x. 7 root root 4096 3. Jun 00:50 .
drwxr-x--x. 33 root root 4096 2. Jun 14:44 ..
-rw-------. 1 root root 7284719 2. Jun 14:44 agis_ddmendpoints.json
-rw-------. 1 root root 4965996 2. Jun 14:44 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 2. Jun 14:44 .alrb
drwxr-xr-x. 3 root root 4096 2. Jun 14:44 APPS
-rw-------. 1 root root 550 2. Jun 14:44 .asetup
-rw-------. 1 root root 2986 2. Jun 14:45 .asetup.save
-rw-r--r--. 1 root root 0 2. Jun 14:44 boinc_lockfile
-rw-r--r--. 1 root root 8192 3. Jun 00:50 boinc_mmap_file
-rw-r--r--. 1 root root 537 3. Jun 00:50 boinc_task_state.xml
-rw-r--r--. 1 root root 375057792 2. Jun 14:44 EVNT.17323937._000656.pool.root.1
-rw-------. 1 root root 47676 3. Jun 00:50 heartbeat.json
-rw-r--r--. 1 root root 5470 2. Jun 14:44 init_data.xml
-rw-r--r--. 1 root root 247988 2. Jun 14:44 input.tar.gz
-rw-r--r--. 1 root root 112 2. Jun 14:44 job.xml
-rw-------. 1 root root 25675138 3. Jun 00:50 log.18099307._049574.job.log.1
-rw-------. 1 root root 2512010 3. Jun 00:50 log.18099307._049574.job.log.tgz.1
-rw-------. 1 root root 306 3. Jun 00:49 memory_monitor_summary.json
-rw-------. 1 root root 391 3. Jun 00:50 output.list
-rw-------. 1 4871 1028 2887 1. Jun 10:40 pandaJobData.out
drwxrwx---. 2 root root 4096 3. Jun 00:50 PanDA_Pilot-4366950021
drwxr-xr-x. 3 501 games 4096 29. Mai 14:16 pilot2
-rw-r--r--. 1 root root 238965 31. Mai 18:37 pilot2.tar.gz
-rw-------. 1 root root 25660049 3. Jun 00:50 pilotlog.txt
-rw-r--r--. 1 root root 4444 1. Jun 10:40 queuedata.json
-rw-r--r--. 1 root root 786 2. Jun 14:44 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 2. Jun 14:44 run_atlas
-rwx------. 1 4871 1028 14753 1. Jun 10:40 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 3. Jun 00:50 runtime_log
-rw-r--r--. 1 root root 7355 3. Jun 00:50 runtime_log.err
drwxrwx--x. 2 root root 4096 3. Jun 00:50 shared
-rw-r--r--. 1 root root 8714 2. Jun 14:44 start_atlas.sh
-rw-r--r--. 1 root root 16744 3. Jun 00:50 stderr.txt
-rw-------. 1 root root 493 3. Jun 00:50 Tw9MDmzjErunShfckohDCDFpABFKDmABFKDm7DvSDmABFKDmZxMASm.diag
-rw-r--r--. 1 root root 107 2. Jun 14:44 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 3. Jun 00:50 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
00:50:57 (11866): run_atlas exited; CPU time 36371.314719
00:50:57 (11866): called boinc_finish(0)
</stderr_txt>
]]>
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