| Name | w6kNDmqISrunShfckohDCDFpABFKDmABFKDmC2RTDmABFKDmpjCfMn_0 |
| Workunit | 1901811 |
| Created | 1 Jun 2019, 23:14:50 UTC |
| Sent | 2 Jun 2019, 9:04:58 UTC |
| Report deadline | 9 Jun 2019, 9:04:58 UTC |
| Received | 2 Jun 2019, 19:13:16 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 8 min 18 sec |
| CPU time | 10 hours 27 min 39 sec |
| Validate state | Valid |
| Credit | 168.93 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.45 GB |
| Peak disk usage | 884.30 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
00:54:28 (18252): wrapper (7.7.26015): starting
00:54:28 (18252): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/31/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/31/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/31/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/31/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18099335._046752.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-03 09:17:07,367 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.30"
2019-06-03 09:17:07,369 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-03 09:17:07,373 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/31/PanDA_Pilot-4367889241/memory_monitor_summary.json
2019-06-03 09:17:07,374 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2129912, 'maxSwap': 0, 'totRCHAR': 1618257250, 'totRBYTES': 1640570880, 'totWCHAR': 113927603, 'totWBYTES': 124035072, 'maxVMEM': 3227780, 'maxPSS': 2121464}, 'Avg': {'avgRSS': 2073424, 'rateWCHAR': 3070, 'avgVMEM': 3172336, 'avgPSS': 2064667, 'rateRCHAR': 43619, 'avgSwap': 0, 'rateRBYTES': 44221, 'rateWBYTES': 3343}}
2019-06-03 09:17:07,374 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-03 09:17:07,374 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-03 09:17:07,375 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-03 09:17:07,375 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-03 09:17:07,375 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-03 09:17:07,375 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-03 09:17:07,375 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-03 09:17:07,375 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-03 09:17:07,375 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-03 09:17:07,375 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 37244 s
2019-06-03 09:17:07,375 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 30 s
2019-06-03 09:17:07,376 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-03 09:17:07,376 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-03 09:17:07,376 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/31/PanDA_Pilot-4367889241/pandatracerlog.txt (ignoring)
2019-06-03 09:17:07,376 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/31/PanDA_Pilot-4367889241/pilotlog.txt
2019-06-03 09:17:09,618 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-03 09:17:09,689 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-03 09:17:07,367 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.30 B/s (using 598 data points, chi2=-143829573999.489441)
2019-06-03 09:17:07,367 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.30"
2019-06-03 09:17:07,369 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-03 09:17:07,373 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/31/PanDA_Pilot-4367889241/memory_monitor_summary.json
2019-06-03 09:17:07,374 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2129912, 'maxSwap': 0, 'totRCHAR': 1618257250, 'totRBYTES': 1640570880, 'totWCHAR': 113927603, 'totWBYTES': 124035072, 'maxVMEM': 3227780, 'maxPSS': 2121464}, 'Avg': {'avgRSS': 2073424, 'rateWCHAR': 3070, 'avgVMEM': 3172336, 'avgPSS': 2064667, 'rateRCHAR': 43619, 'avgSwap': 0, 'rateRBYTES': 44221, 'rateWBYTES': 3343}}
2019-06-03 09:17:07,374 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-03 09:17:07,374 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-03 09:17:07,375 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-03 09:17:07,375 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-03 09:17:07,375 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-03 09:17:07,375 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-03 09:17:07,375 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-03 09:17:07,375 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-03 09:17:07,375 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-03 09:17:07,375 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 37244 s
2019-06-03 09:17:07,375 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 30 s
2019-06-03 09:17:07,376 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-03 09:17:07,376 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-03 09:17:07,376 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/31/PanDA_Pilot-4367889241/pandatracerlog.txt (ignoring)
2019-06-03 09:17:07,376 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/31/PanDA_Pilot-4367889241/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-03 09:17:09,692 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/31/heartbeat.json
2019-06-03 09:17:09,692 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4367889241 was dequeued from the monitored payloads queue
2019-06-03 09:17:10,679 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-03 09:17:10,680 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-03 09:17:10,680 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-03 09:17:10,680 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4367889241
2019-06-03 09:17:10,680 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18099335
2019-06-03 09:17:10,680 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-03 09:17:10,680 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-03 09:17:10,681 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-03 09:17:10,681 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-03 09:17:10,681 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-03 09:17:10,681 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-03 09:17:10,681 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-03 09:17:10,681 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-03 09:17:10,681 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 37427 s
2019-06-03 09:17:10,684 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-06-03 09:17:10,684 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-03 09:17:10,684 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 24438
2019-06-03 09:17:10,686 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-03 09:17:10,686 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-03 09:17:10,686 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-03 09:17:10,686 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-03 09:17:10,686 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-03 09:17:10,686 | INFO | retrieve | pilot.control.job | has_job_completed | job 4367889241 has completed
2019-06-03 09:17:10,687 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-03 09:17:10,687 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-03 09:17:20,730 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-03 09:17:20,730 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/31
2019-06-03 09:17:20,755 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14386462720 B)
2019-06-03 09:17:20,756 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-03 09:17:20,773 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-03 09:17:20,912 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-03 09:17:21,100 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-03 09:17:21,102 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-03 09:17:21,265 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-03 09:17:21,324 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-03 09:17:21,324 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-03 09:17:21,386 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-03 09:17:22,369 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-03 09:17:22,370 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-03 09:17:22,710 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-03 09:17:22,710 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-03 09:17:23,328 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-03 09:17:26,379 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-03 09:17:45,151 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s)
2019-06-03 09:17:45,152 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-03 09:17:45,152 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-03 09:17:45,153 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-03 09:17:45,153 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=37385.80s
KernelTime=926.17s
UserTime=37347.63s
CPUUsage=102%
MaxResidentMemory=2017204kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9604
MinorPageFaults=17432718
Swaps=0
ForcedSwitches=449852
WaitSwitches=18930871
Inputs=3349416
Outputs=400344
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 434192
drwxrwx--x. 7 root root 4096 3. Jun 11:17 .
drwxr-x--x. 34 root root 4096 3. Jun 00:54 ..
-rw-------. 1 root root 7284719 3. Jun 00:55 agis_ddmendpoints.json
-rw-------. 1 root root 4966321 3. Jun 00:55 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 3. Jun 00:54 .alrb
drwxr-xr-x. 3 root root 4096 3. Jun 00:54 APPS
-rw-------. 1 root root 550 3. Jun 00:54 .asetup
-rw-------. 1 root root 2986 3. Jun 00:55 .asetup.save
-rw-r--r--. 1 root root 0 3. Jun 00:54 boinc_lockfile
-rw-r--r--. 1 root root 8192 3. Jun 11:17 boinc_mmap_file
-rw-r--r--. 1 root root 537 3. Jun 11:16 boinc_task_state.xml
-rw-r--r--. 1 root root 376078635 3. Jun 00:54 EVNT.17323946._000904.pool.root.1
-rw-------. 1 root root 70795 3. Jun 11:17 heartbeat.json
-rw-r--r--. 1 root root 5470 3. Jun 00:54 init_data.xml
-rw-r--r--. 1 root root 247979 3. Jun 00:54 input.tar.gz
-rw-r--r--. 1 root root 112 3. Jun 00:54 job.xml
-rw-------. 1 root root 26468721 3. Jun 11:17 log.18099335._046752.job.log.1
-rw-------. 1 root root 2595328 3. Jun 11:16 log.18099335._046752.job.log.tgz.1
-rw-------. 1 root root 306 3. Jun 11:16 memory_monitor_summary.json
-rw-------. 1 root root 391 3. Jun 11:17 output.list
-rw-------. 1 4871 1028 2885 2. Jun 01:09 pandaJobData.out
drwxrwx---. 2 root root 4096 3. Jun 11:17 PanDA_Pilot-4367889241
drwxr-xr-x. 3 501 games 4096 29. Mai 14:16 pilot2
-rw-r--r--. 1 root root 238965 31. Mai 18:37 pilot2.tar.gz
-rw-------. 1 root root 26453632 3. Jun 11:17 pilotlog.txt
-rw-r--r--. 1 root root 4444 2. Jun 01:05 queuedata.json
-rw-r--r--. 1 root root 786 3. Jun 00:54 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 3. Jun 00:54 run_atlas
-rwx------. 1 4871 1028 14753 2. Jun 01:09 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 3. Jun 11:17 runtime_log
-rw-r--r--. 1 root root 7355 3. Jun 11:17 runtime_log.err
drwxrwx--x. 2 root root 4096 3. Jun 11:17 shared
-rw-r--r--. 1 root root 8714 3. Jun 00:54 start_atlas.sh
-rw-r--r--. 1 root root 16745 3. Jun 11:17 stderr.txt
-rw-------. 1 root root 493 3. Jun 11:17 w6kNDmqISrunShfckohDCDFpABFKDmABFKDmC2RTDmABFKDmpjCfMn.diag
-rw-r--r--. 1 root root 107 3. Jun 00:54 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 3. Jun 11:17 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
11:17:46 (18252): run_atlas exited; CPU time 37348.239204
11:17:46 (18252): called boinc_finish(0)
</stderr_txt>
]]>
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