| Name | mEALDmo7brunShfckohDCDFpABFKDmABFKDmNLqTDmABFKDmK0leYo_0 |
| Workunit | 1901918 |
| Created | 2 Jun 2019, 9:39:43 UTC |
| Sent | 3 Jun 2019, 5:58:57 UTC |
| Report deadline | 10 Jun 2019, 5:58:57 UTC |
| Received | 3 Jun 2019, 16:38:11 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 39 min 14 sec |
| CPU time | 11 hours 0 min 34 sec |
| Validate state | Valid |
| Credit | 177.52 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.92 GB |
| Peak swap size | 2.46 GB |
| Peak disk usage | 892.36 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
22:25:13 (2282): wrapper (7.7.26015): starting
22:25:13 (2282): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/33/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/33/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/33/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/33/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18251703._000805.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-04 07:20:33,951 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.17"
2019-06-04 07:20:33,951 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-04 07:20:33,953 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/33/PanDA_Pilot-4368654787/memory_monitor_summary.json
2019-06-04 07:20:33,954 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2114472, 'maxSwap': 0, 'totRCHAR': 1674587654, 'totRBYTES': 1635459072, 'totWCHAR': 118650884, 'totWBYTES': 129286144, 'maxVMEM': 3250160, 'maxPSS': 2106024}, 'Avg': {'avgRSS': 2079636, 'rateWCHAR': 3038, 'avgVMEM': 3192667, 'avgPSS': 2070891, 'rateRCHAR': 42878, 'avgSwap': 0, 'rateRBYTES': 41876, 'rateWBYTES': 3310}}
2019-06-04 07:20:33,955 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-04 07:20:33,955 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-04 07:20:33,955 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-04 07:20:33,955 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-04 07:20:33,955 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-06-04 07:20:33,956 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-04 07:20:33,956 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-04 07:20:33,956 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-04 07:20:33,956 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-04 07:20:33,956 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 39206 s
2019-06-04 07:20:33,956 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 28 s
2019-06-04 07:20:33,956 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-04 07:20:33,956 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-04 07:20:33,957 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/33/PanDA_Pilot-4368654787/pandatracerlog.txt (ignoring)
2019-06-04 07:20:33,957 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/33/PanDA_Pilot-4368654787/pilotlog.txt
2019-06-04 07:20:36,339 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-04 07:20:36,411 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-04 07:20:33,950 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.17 B/s (using 631 data points, chi2=-19400912946.133003)
2019-06-04 07:20:33,951 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.17"
2019-06-04 07:20:33,951 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-04 07:20:33,953 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/33/PanDA_Pilot-4368654787/memory_monitor_summary.json
2019-06-04 07:20:33,954 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2114472, 'maxSwap': 0, 'totRCHAR': 1674587654, 'totRBYTES': 1635459072, 'totWCHAR': 118650884, 'totWBYTES': 129286144, 'maxVMEM': 3250160, 'maxPSS': 2106024}, 'Avg': {'avgRSS': 2079636, 'rateWCHAR': 3038, 'avgVMEM': 3192667, 'avgPSS': 2070891, 'rateRCHAR': 42878, 'avgSwap': 0, 'rateRBYTES': 41876, 'rateWBYTES': 3310}}
2019-06-04 07:20:33,955 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-04 07:20:33,955 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-04 07:20:33,955 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-04 07:20:33,955 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-04 07:20:33,955 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-06-04 07:20:33,956 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-04 07:20:33,956 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-04 07:20:33,956 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-04 07:20:33,956 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-04 07:20:33,956 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 39206 s
2019-06-04 07:20:33,956 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 28 s
2019-06-04 07:20:33,956 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-04 07:20:33,956 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-04 07:20:33,957 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/33/PanDA_Pilot-4368654787/pandatracerlog.txt (ignoring)
2019-06-04 07:20:33,957 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/33/PanDA_Pilot-4368654787/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-04 07:20:36,412 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/33/heartbeat.json
2019-06-04 07:20:36,413 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4368654787 was dequeued from the monitored payloads queue
2019-06-04 07:20:37,660 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-04 07:20:37,661 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-04 07:20:37,661 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-04 07:20:37,661 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4368654787
2019-06-04 07:20:37,661 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18251703
2019-06-04 07:20:37,661 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-04 07:20:37,662 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-04 07:20:37,663 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-04 07:20:37,663 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-04 07:20:37,663 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-04 07:20:37,663 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-04 07:20:37,663 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-04 07:20:37,663 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-04 07:20:37,664 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 39362 s
2019-06-04 07:20:37,664 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-06-04 07:20:37,664 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-04 07:20:37,664 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 8551
2019-06-04 07:20:37,664 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-04 07:20:37,664 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-04 07:20:37,664 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-04 07:20:37,665 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-04 07:20:37,665 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-04 07:20:37,665 | INFO | retrieve | pilot.control.job | has_job_completed | job 4368654787 has completed
2019-06-04 07:20:37,665 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-04 07:20:37,665 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-04 07:20:47,697 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-04 07:20:47,697 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/33
2019-06-04 07:20:47,718 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (13506707456 B)
2019-06-04 07:20:47,719 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-04 07:20:47,726 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-04 07:20:47,727 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-04 07:20:47,961 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-04 07:20:48,018 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-04 07:20:48,046 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-04 07:20:48,094 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-04 07:20:48,196 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-04 07:20:48,660 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-04 07:20:48,857 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-04 07:20:48,872 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-04 07:20:49,373 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-04 07:20:49,509 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-04 07:20:49,509 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-04 07:20:52,766 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-04 07:21:04,666 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-06-04 07:21:04,667 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-04 07:21:04,668 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-04 07:21:04,668 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-04 07:21:04,668 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=39344.90s
KernelTime=938.44s
UserTime=39301.06s
CPUUsage=102%
MaxResidentMemory=2028776kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9582
MinorPageFaults=18114632
Swaps=0
ForcedSwitches=440125
WaitSwitches=19430159
Inputs=3338368
Outputs=418104
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 437744
drwxrwx--x. 7 root root 4096 4. Jun 09:21 .
drwxr-x--x. 36 root root 4096 3. Jun 22:25 ..
-rw-------. 1 root root 7284719 3. Jun 22:25 agis_ddmendpoints.json
-rw-------. 1 root root 4948122 3. Jun 22:25 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 3. Jun 22:25 .alrb
drwxr-xr-x. 3 root root 4096 3. Jun 22:25 APPS
-rw-------. 1 root root 550 3. Jun 22:25 .asetup
-rw-------. 1 root root 2986 3. Jun 22:26 .asetup.save
-rw-r--r--. 1 root root 0 3. Jun 22:25 boinc_lockfile
-rw-r--r--. 1 root root 8192 4. Jun 09:20 boinc_mmap_file
-rw-r--r--. 1 root root 537 4. Jun 09:19 boinc_task_state.xml
-rw-r--r--. 1 root root 376962249 3. Jun 22:25 EVNT.17323975._000017.pool.root.1
-rw-------. 1 root root 51108 4. Jun 09:20 heartbeat.json
-rw-r--r--. 1 root root 5470 3. Jun 22:25 init_data.xml
-rw-r--r--. 1 root root 247971 3. Jun 22:25 input.tar.gz
-rw-r--r--. 1 root root 112 3. Jun 22:25 job.xml
-rw-------. 1 root root 27817877 4. Jun 09:21 log.18251703._000805.job.log.1
-rw-------. 1 root root 2693881 4. Jun 09:20 log.18251703._000805.job.log.tgz.1
-rw-------. 1 root root 493 4. Jun 09:21 mEALDmo7brunShfckohDCDFpABFKDmABFKDmNLqTDmABFKDmK0leYo.diag
-rw-------. 1 root root 306 4. Jun 09:19 memory_monitor_summary.json
-rw-------. 1 root root 391 4. Jun 09:21 output.list
-rw-------. 1 4871 1028 2881 2. Jun 11:38 pandaJobData.out
drwxrwx---. 2 root root 4096 4. Jun 09:20 PanDA_Pilot-4368654787
drwxr-xr-x. 3 501 games 4096 29. Mai 14:16 pilot2
-rw-r--r--. 1 root root 238965 31. Mai 18:37 pilot2.tar.gz
-rw-------. 1 root root 27802788 4. Jun 09:21 pilotlog.txt
-rw-r--r--. 1 root root 4444 2. Jun 11:38 queuedata.json
-rw-r--r--. 1 root root 786 3. Jun 22:25 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 3. Jun 22:25 run_atlas
-rwx------. 1 4871 1028 14753 2. Jun 11:38 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 4. Jun 09:21 runtime_log
-rw-r--r--. 1 root root 7355 4. Jun 09:21 runtime_log.err
drwxrwx--x. 2 root root 4096 4. Jun 09:21 shared
-rw-r--r--. 1 root root 8714 3. Jun 22:25 start_atlas.sh
-rw-r--r--. 1 root root 16741 4. Jun 09:21 stderr.txt
-rw-r--r--. 1 root root 107 3. Jun 22:25 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 4. Jun 09:20 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
09:21:05 (2282): run_atlas exited; CPU time 39301.485266
09:21:05 (2282): called boinc_finish(0)
</stderr_txt>
]]>
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