| Name | EwnNDmHrkrunShfckohDCDFpABFKDmABFKDm9PBUDmABFKDmDEN2km_0 |
| Workunit | 1901986 |
| Created | 2 Jun 2019, 18:58:02 UTC |
| Sent | 2 Jun 2019, 19:13:16 UTC |
| Report deadline | 9 Jun 2019, 19:13:16 UTC |
| Received | 3 Jun 2019, 5:58:57 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 45 min 41 sec |
| CPU time | 11 hours 7 min 23 sec |
| Validate state | Valid |
| Credit | 179.31 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.44 GB |
| Peak disk usage | 892.21 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
11:20:07 (25716): wrapper (7.7.26015): starting
11:20:07 (25716): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/32/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/32/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/32/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/32/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18251716._002584.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-03 20:21:42,587 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.14"
2019-06-03 20:21:42,587 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-03 20:21:42,588 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/32/PanDA_Pilot-4369118408/memory_monitor_summary.json
2019-06-03 20:21:42,647 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2115560, 'maxSwap': 0, 'totRCHAR': 1686265291, 'totRBYTES': 1637924864, 'totWCHAR': 117318855, 'totWBYTES': 128024576, 'maxVMEM': 3222760, 'maxPSS': 2106464}, 'Avg': {'avgRSS': 2082249, 'rateWCHAR': 2974, 'avgVMEM': 3180630, 'avgPSS': 2073498, 'rateRCHAR': 42753, 'avgSwap': 0, 'rateRBYTES': 41527, 'rateWBYTES': 3245}}
2019-06-03 20:21:42,648 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-03 20:21:42,648 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-03 20:21:42,649 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-03 20:21:42,650 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-03 20:21:42,650 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-03 20:21:42,650 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-03 20:21:42,650 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-03 20:21:42,650 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-03 20:21:42,650 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-03 20:21:42,650 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 39580 s
2019-06-03 20:21:42,650 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-06-03 20:21:42,650 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-03 20:21:42,651 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-03 20:21:42,651 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/32/PanDA_Pilot-4369118408/pandatracerlog.txt (ignoring)
2019-06-03 20:21:42,651 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/32/PanDA_Pilot-4369118408/pilotlog.txt
2019-06-03 20:21:45,044 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-03 20:21:45,045 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-03 20:21:42,586 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.14 B/s (using 636 data points, chi2=510382149583.761414)
2019-06-03 20:21:42,587 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.14"
2019-06-03 20:21:42,587 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-03 20:21:42,588 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/32/PanDA_Pilot-4369118408/memory_monitor_summary.json
2019-06-03 20:21:42,647 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2115560, 'maxSwap': 0, 'totRCHAR': 1686265291, 'totRBYTES': 1637924864, 'totWCHAR': 117318855, 'totWBYTES': 128024576, 'maxVMEM': 3222760, 'maxPSS': 2106464}, 'Avg': {'avgRSS': 2082249, 'rateWCHAR': 2974, 'avgVMEM': 3180630, 'avgPSS': 2073498, 'rateRCHAR': 42753, 'avgSwap': 0, 'rateRBYTES': 41527, 'rateWBYTES': 3245}}
2019-06-03 20:21:42,648 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-03 20:21:42,648 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-03 20:21:42,649 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-03 20:21:42,650 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-03 20:21:42,650 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-03 20:21:42,650 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-03 20:21:42,650 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-03 20:21:42,650 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-03 20:21:42,650 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-03 20:21:42,650 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 39580 s
2019-06-03 20:21:42,650 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-06-03 20:21:42,650 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-03 20:21:42,651 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-03 20:21:42,651 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/32/PanDA_Pilot-4369118408/pandatracerlog.txt (ignoring)
2019-06-03 20:21:42,651 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/32/PanDA_Pilot-4369118408/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-03 20:21:45,047 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/32/heartbeat.json
2019-06-03 20:21:45,047 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4369118408 was dequeued from the monitored payloads queue
2019-06-03 20:21:46,109 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-03 20:21:46,109 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-03 20:21:46,109 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-03 20:21:46,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4369118408
2019-06-03 20:21:46,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18251716
2019-06-03 20:21:46,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-03 20:21:46,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-03 20:21:46,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-03 20:21:46,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-03 20:21:46,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-03 20:21:46,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-03 20:21:46,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-03 20:21:46,110 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-03 20:21:46,111 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 39752 s
2019-06-03 20:21:46,111 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-06-03 20:21:46,111 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-03 20:21:46,111 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 31948
2019-06-03 20:21:46,111 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-03 20:21:46,111 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-03 20:21:46,111 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-03 20:21:46,112 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-03 20:21:46,112 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-03 20:21:46,112 | INFO | retrieve | pilot.control.job | has_job_completed | job 4369118408 has completed
2019-06-03 20:21:46,112 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-03 20:21:46,112 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-03 20:21:56,153 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-03 20:21:56,153 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/32
2019-06-03 20:21:56,172 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14382268416 B)
2019-06-03 20:21:56,173 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-03 20:21:56,176 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-03 20:21:56,217 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-03 20:21:56,413 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-03 20:21:56,517 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-03 20:21:56,684 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-03 20:21:56,938 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-03 20:21:57,036 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-03 20:21:57,160 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-03 20:21:57,167 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-03 20:21:58,199 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-03 20:21:58,199 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-03 20:21:58,225 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-03 20:21:58,226 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-03 20:21:59,587 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-03 20:22:43,021 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s)
2019-06-03 20:22:43,021 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-03 20:22:43,022 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-03 20:22:43,022 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-03 20:22:43,023 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=39745.92s
KernelTime=979.56s
UserTime=39708.64s
CPUUsage=102%
MaxResidentMemory=2002764kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9729
MinorPageFaults=18128080
Swaps=0
ForcedSwitches=423779
WaitSwitches=20014040
Inputs=3363424
Outputs=424768
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 438644
drwxrwx--x. 7 root root 4096 3. Jun 22:22 .
drwxr-x--x. 35 root root 4096 3. Jun 11:20 ..
-rw-------. 1 root root 7284719 3. Jun 11:20 agis_ddmendpoints.json
-rw-------. 1 root root 4966651 3. Jun 11:20 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 3. Jun 11:20 .alrb
drwxr-xr-x. 3 root root 4096 3. Jun 11:20 APPS
-rw-------. 1 root root 550 3. Jun 11:20 .asetup
-rw-------. 1 root root 2986 3. Jun 11:21 .asetup.save
-rw-r--r--. 1 root root 0 3. Jun 11:20 boinc_lockfile
-rw-r--r--. 1 root root 8192 3. Jun 22:22 boinc_mmap_file
-rw-r--r--. 1 root root 537 3. Jun 22:21 boinc_task_state.xml
-rw-r--r--. 1 root root 377374673 3. Jun 11:20 EVNT.17323984._000105.pool.root.1
-rw-------. 1 root root 493 3. Jun 22:22 EwnNDmHrkrunShfckohDCDFpABFKDmABFKDm9PBUDmABFKDmDEN2km.diag
-rw-------. 1 root root 60418 3. Jun 22:21 heartbeat.json
-rw-r--r--. 1 root root 5470 3. Jun 11:20 init_data.xml
-rw-r--r--. 1 root root 247987 3. Jun 11:20 input.tar.gz
-rw-r--r--. 1 root root 112 3. Jun 11:20 job.xml
-rw-------. 1 root root 28034062 3. Jun 22:22 log.18251716._002584.job.log.1
-rw-------. 1 root root 2743596 3. Jun 22:21 log.18251716._002584.job.log.tgz.1
-rw-------. 1 root root 306 3. Jun 22:21 memory_monitor_summary.json
-rw-------. 1 root root 391 3. Jun 22:22 output.list
-rw-------. 1 4871 1028 2883 2. Jun 20:58 pandaJobData.out
drwxrwx---. 2 root root 4096 3. Jun 22:21 PanDA_Pilot-4369118408
drwxr-xr-x. 3 501 games 4096 29. Mai 14:16 pilot2
-rw-r--r--. 1 root root 238965 31. Mai 18:37 pilot2.tar.gz
-rw-------. 1 root root 28018973 3. Jun 22:22 pilotlog.txt
-rw-r--r--. 1 root root 4444 2. Jun 20:55 queuedata.json
-rw-r--r--. 1 root root 786 3. Jun 11:20 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 3. Jun 11:20 run_atlas
-rwx------. 1 4871 1028 14753 2. Jun 20:58 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 3. Jun 22:22 runtime_log
-rw-r--r--. 1 root root 7355 3. Jun 22:22 runtime_log.err
drwxrwx--x. 2 root root 4096 3. Jun 22:22 shared
-rw-r--r--. 1 root root 8714 3. Jun 11:20 start_atlas.sh
-rw-r--r--. 1 root root 16744 3. Jun 22:22 stderr.txt
-rw-r--r--. 1 root root 107 3. Jun 11:20 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 3. Jun 22:22 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
22:22:44 (25716): run_atlas exited; CPU time 39708.984316
22:22:44 (25716): called boinc_finish(0)
</stderr_txt>
]]>
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