| Name | qVYLDmjazrunShfckohDCDFpABFKDmABFKDm45kUDmABFKDmdQwWDm_0 |
| Workunit | 1902338 |
| Created | 3 Jun 2019, 10:43:01 UTC |
| Sent | 3 Jun 2019, 16:38:11 UTC |
| Report deadline | 10 Jun 2019, 16:38:11 UTC |
| Received | 4 Jun 2019, 2:59:36 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 21 min 25 sec |
| CPU time | 10 hours 42 min 21 sec |
| Validate state | Valid |
| Credit | 172.57 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.44 GB |
| Peak disk usage | 886.20 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
09:23:33 (11268): wrapper (7.7.26015): starting
09:23:33 (11268): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/34/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/34/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/34/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/34/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18251716._005509.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-04 18:00:06,502 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-04 18:00:06,503 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/34/PanDA_Pilot-4370070938/memory_monitor_summary.json
2019-06-04 18:00:06,505 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2116892, 'maxSwap': 0, 'totRCHAR': 1643779858, 'totRBYTES': 1637400576, 'totWCHAR': 116083191, 'totWBYTES': 126373888, 'maxVMEM': 3223088, 'maxPSS': 2108444}, 'Avg': {'avgRSS': 2084023, 'rateWCHAR': 3058, 'avgVMEM': 3182977, 'avgPSS': 2075250, 'rateRCHAR': 43309, 'avgSwap': 0, 'rateRBYTES': 43141, 'rateWBYTES': 3329}}
2019-06-04 18:00:06,505 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-04 18:00:06,505 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-04 18:00:06,506 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-04 18:00:06,506 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-04 18:00:06,506 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-04 18:00:06,506 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-04 18:00:06,506 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-04 18:00:06,506 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-04 18:00:06,507 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-04 18:00:06,507 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38074 s
2019-06-04 18:00:06,507 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 28 s
2019-06-04 18:00:06,507 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-04 18:00:06,507 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-04 18:00:06,507 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/34/PanDA_Pilot-4370070938/pandatracerlog.txt (ignoring)
2019-06-04 18:00:06,508 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/34/PanDA_Pilot-4370070938/pilotlog.txt
2019-06-04 18:00:08,926 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-04 18:00:08,994 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-04 18:00:06,501 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 2.72 B/s (using 612 data points, chi2=-161992632698.095062)
2019-06-04 18:00:06,502 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=2.72"
2019-06-04 18:00:06,502 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-04 18:00:06,503 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/34/PanDA_Pilot-4370070938/memory_monitor_summary.json
2019-06-04 18:00:06,505 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2116892, 'maxSwap': 0, 'totRCHAR': 1643779858, 'totRBYTES': 1637400576, 'totWCHAR': 116083191, 'totWBYTES': 126373888, 'maxVMEM': 3223088, 'maxPSS': 2108444}, 'Avg': {'avgRSS': 2084023, 'rateWCHAR': 3058, 'avgVMEM': 3182977, 'avgPSS': 2075250, 'rateRCHAR': 43309, 'avgSwap': 0, 'rateRBYTES': 43141, 'rateWBYTES': 3329}}
2019-06-04 18:00:06,505 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-04 18:00:06,505 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-04 18:00:06,506 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-04 18:00:06,506 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-04 18:00:06,506 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-04 18:00:06,506 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-04 18:00:06,506 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-04 18:00:06,506 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-04 18:00:06,507 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-04 18:00:06,507 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38074 s
2019-06-04 18:00:06,507 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 28 s
2019-06-04 18:00:06,507 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-04 18:00:06,507 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-04 18:00:06,507 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/34/PanDA_Pilot-4370070938/pandatracerlog.txt (ignoring)
2019-06-04 18:00:06,508 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/34/PanDA_Pilot-4370070938/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-04 18:00:09,001 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/34/heartbeat.json
2019-06-04 18:00:09,001 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4370070938 was dequeued from the monitored payloads queue
2019-06-04 18:00:10,221 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-04 18:00:10,221 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-04 18:00:10,221 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-04 18:00:10,221 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4370070938
2019-06-04 18:00:10,221 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18251716
2019-06-04 18:00:10,222 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-04 18:00:10,222 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-04 18:00:10,222 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-04 18:00:10,222 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-04 18:00:10,222 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-04 18:00:10,222 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-04 18:00:10,222 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-04 18:00:10,222 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-04 18:00:10,223 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 38321 s
2019-06-04 18:00:10,223 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-06-04 18:00:10,223 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-04 18:00:10,223 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 17548
2019-06-04 18:00:10,223 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-04 18:00:10,223 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-04 18:00:10,223 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-04 18:00:10,223 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-04 18:00:10,223 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-04 18:00:10,224 | INFO | retrieve | pilot.control.job | has_job_completed | job 4370070938 has completed
2019-06-04 18:00:10,224 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-04 18:00:10,224 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-04 18:00:11,245 | INFO | monitor | pilot.control.monitor | control | 38158 s have passed since pilot start
2019-06-04 18:00:20,264 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-04 18:00:20,264 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/34
2019-06-04 18:00:20,288 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (13979615232 B)
2019-06-04 18:00:20,289 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-04 18:00:20,289 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-04 18:00:20,327 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-04 18:00:20,329 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-04 18:00:20,330 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-04 18:00:20,446 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-04 18:00:20,637 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-04 18:00:20,708 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-04 18:00:20,893 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-04 18:00:21,067 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-04 18:00:21,356 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-04 18:00:21,357 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-04 18:00:21,938 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-04 18:00:21,939 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-04 18:00:23,367 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-04 18:01:07,189 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-06-04 18:01:07,189 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-04 18:01:07,195 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-04 18:01:07,195 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-04 18:01:07,195 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=38246.98s
KernelTime=940.00s
UserTime=38252.24s
CPUUsage=102%
MaxResidentMemory=2004244kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9639
MinorPageFaults=17795618
Swaps=0
ForcedSwitches=422103
WaitSwitches=18904943
Inputs=3377104
Outputs=406584
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 434820
drwxrwx--x. 7 root root 4096 4. Jun 20:01 .
drwxr-x--x. 37 root root 4096 4. Jun 09:23 ..
-rw-------. 1 root root 7284719 4. Jun 09:24 agis_ddmendpoints.json
-rw-------. 1 root root 4962199 4. Jun 09:24 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 4. Jun 09:23 .alrb
drwxr-xr-x. 3 root root 4096 4. Jun 09:23 APPS
-rw-------. 1 root root 550 4. Jun 09:23 .asetup
-rw-------. 1 root root 2986 4. Jun 09:24 .asetup.save
-rw-r--r--. 1 root root 0 4. Jun 09:23 boinc_lockfile
-rw-r--r--. 1 root root 8192 4. Jun 20:00 boinc_mmap_file
-rw-r--r--. 1 root root 537 4. Jun 19:59 boinc_task_state.xml
-rw-r--r--. 1 root root 375756437 4. Jun 09:23 EVNT.17323984._000164.pool.root.1
-rw-------. 1 root root 52214 4. Jun 20:00 heartbeat.json
-rw-r--r--. 1 root root 5470 4. Jun 09:23 init_data.xml
-rw-r--r--. 1 root root 247974 4. Jun 09:23 input.tar.gz
-rw-r--r--. 1 root root 112 4. Jun 09:23 job.xml
-rw-------. 1 root root 26952573 4. Jun 20:01 log.18251716._005509.job.log.1
-rw-------. 1 root root 2624298 4. Jun 19:59 log.18251716._005509.job.log.tgz.1
-rw-------. 1 root root 306 4. Jun 19:59 memory_monitor_summary.json
-rw-------. 1 root root 391 4. Jun 20:01 output.list
-rw-------. 1 4871 1028 2883 3. Jun 12:41 pandaJobData.out
drwxrwx---. 2 root root 4096 4. Jun 20:00 PanDA_Pilot-4370070938
drwxr-xr-x. 3 501 games 4096 29. Mai 14:16 pilot2
-rw-r--r--. 1 root root 238965 31. Mai 18:37 pilot2.tar.gz
-rw-------. 1 root root 26937484 4. Jun 20:01 pilotlog.txt
-rw-r--r--. 1 root root 4444 3. Jun 12:41 queuedata.json
-rw-------. 1 root root 493 4. Jun 20:01 qVYLDmjazrunShfckohDCDFpABFKDmABFKDm45kUDmABFKDmdQwWDm.diag
-rw-r--r--. 1 root root 786 4. Jun 09:23 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 4. Jun 09:23 run_atlas
-rwx------. 1 4871 1028 14753 3. Jun 12:41 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 4. Jun 20:01 runtime_log
-rw-r--r--. 1 root root 7355 4. Jun 20:01 runtime_log.err
drwxrwx--x. 2 root root 4096 4. Jun 20:01 shared
-rw-r--r--. 1 root root 8714 4. Jun 09:23 start_atlas.sh
-rw-r--r--. 1 root root 16747 4. Jun 20:01 stderr.txt
-rw-r--r--. 1 root root 107 4. Jun 09:23 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 4. Jun 20:00 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
20:01:07 (11268): run_atlas exited; CPU time 38252.658711
20:01:07 (11268): called boinc_finish(0)
</stderr_txt>
]]>
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