| Name | BA9KDmHY3runShfckohDCDFpABFKDmABFKDm8ZuUDmABFKDm2G6d8n_0 |
| Workunit | 1902387 |
| Created | 3 Jun 2019, 14:57:35 UTC |
| Sent | 4 Jun 2019, 2:59:36 UTC |
| Report deadline | 11 Jun 2019, 2:59:36 UTC |
| Received | 4 Jun 2019, 13:28:43 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 29 min 7 sec |
| CPU time | 10 hours 50 min 0 sec |
| Validate state | Valid |
| Credit | 174.71 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.44 GB |
| Peak disk usage | 882.05 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
20:03:39 (19046): wrapper (7.7.26015): starting
20:03:39 (19046): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/35/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/35/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/35/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/35/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18251728._005253.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-05 04:48:04,855 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.14"
2019-06-05 04:48:04,855 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-05 04:48:04,857 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/35/PanDA_Pilot-4370320697/memory_monitor_summary.json
2019-06-05 04:48:04,858 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2117968, 'maxSwap': 0, 'totRCHAR': 1652832023, 'totRBYTES': 1641185280, 'totWCHAR': 115964163, 'totWBYTES': 126238720, 'maxVMEM': 3224292, 'maxPSS': 2109520}, 'Avg': {'avgRSS': 2081262, 'rateWCHAR': 3019, 'avgVMEM': 3179498, 'avgPSS': 2072504, 'rateRCHAR': 43036, 'avgSwap': 0, 'rateRBYTES': 42733, 'rateWBYTES': 3287}}
2019-06-05 04:48:04,858 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-05 04:48:04,859 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-05 04:48:04,859 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-05 04:48:04,859 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-05 04:48:04,859 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-05 04:48:04,859 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-05 04:48:04,859 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-05 04:48:04,859 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-05 04:48:04,859 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-05 04:48:04,860 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38548 s
2019-06-05 04:48:04,860 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 30 s
2019-06-05 04:48:04,860 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-05 04:48:04,860 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-05 04:48:04,860 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/35/PanDA_Pilot-4370320697/pandatracerlog.txt (ignoring)
2019-06-05 04:48:04,860 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/35/PanDA_Pilot-4370320697/pilotlog.txt
2019-06-05 04:48:07,324 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-05 04:48:07,394 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-05 04:48:04,855 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.14 B/s (using 618 data points, chi2=2272100636.749661)
2019-06-05 04:48:04,855 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.14"
2019-06-05 04:48:04,855 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-05 04:48:04,857 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/35/PanDA_Pilot-4370320697/memory_monitor_summary.json
2019-06-05 04:48:04,858 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2117968, 'maxSwap': 0, 'totRCHAR': 1652832023, 'totRBYTES': 1641185280, 'totWCHAR': 115964163, 'totWBYTES': 126238720, 'maxVMEM': 3224292, 'maxPSS': 2109520}, 'Avg': {'avgRSS': 2081262, 'rateWCHAR': 3019, 'avgVMEM': 3179498, 'avgPSS': 2072504, 'rateRCHAR': 43036, 'avgSwap': 0, 'rateRBYTES': 42733, 'rateWBYTES': 3287}}
2019-06-05 04:48:04,858 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-05 04:48:04,859 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-05 04:48:04,859 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-05 04:48:04,859 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-05 04:48:04,859 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-05 04:48:04,859 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-05 04:48:04,859 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-05 04:48:04,859 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-05 04:48:04,859 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-05 04:48:04,860 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38548 s
2019-06-05 04:48:04,860 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 30 s
2019-06-05 04:48:04,860 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-05 04:48:04,860 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-05 04:48:04,860 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/35/PanDA_Pilot-4370320697/pandatracerlog.txt (ignoring)
2019-06-05 04:48:04,860 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/35/PanDA_Pilot-4370320697/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-05 04:48:07,397 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/35/heartbeat.json
2019-06-05 04:48:07,397 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4370320697 was dequeued from the monitored payloads queue
2019-06-05 04:48:08,403 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-05 04:48:08,403 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-05 04:48:08,403 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-05 04:48:08,404 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4370320697
2019-06-05 04:48:08,404 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18251728
2019-06-05 04:48:08,404 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-05 04:48:08,404 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-05 04:48:08,404 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-05 04:48:08,404 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-05 04:48:08,404 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-05 04:48:08,404 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-05 04:48:08,404 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-05 04:48:08,405 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-05 04:48:08,405 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 38835 s
2019-06-05 04:48:08,405 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-06-05 04:48:08,405 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-05 04:48:08,405 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 25704
2019-06-05 04:48:08,405 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-05 04:48:08,405 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-05 04:48:08,406 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-05 04:48:08,406 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-05 04:48:08,406 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-05 04:48:08,406 | INFO | retrieve | pilot.control.job | has_job_completed | job 4370320697 has completed
2019-06-05 04:48:08,406 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-05 04:48:08,406 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-05 04:48:18,438 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-05 04:48:18,439 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/35
2019-06-05 04:48:18,485 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14195621888 B)
2019-06-05 04:48:18,486 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-05 04:48:18,516 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-05 04:48:18,666 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-05 04:48:18,682 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-05 04:48:18,824 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-05 04:48:18,906 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-05 04:48:19,255 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-05 04:48:19,265 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-05 04:48:19,266 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-05 04:48:20,287 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-05 04:48:20,288 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-05 04:48:20,386 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-05 04:48:20,393 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-05 04:48:20,746 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-05 04:48:23,810 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-05 04:48:58,246 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-06-05 04:48:58,247 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-05 04:48:58,248 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-05 04:48:58,249 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-05 04:48:58,249 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=38714.21s
KernelTime=1061.56s
UserTime=38677.06s
CPUUsage=102%
MaxResidentMemory=2007712kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9760
MinorPageFaults=18230214
Swaps=0
ForcedSwitches=537069
WaitSwitches=20817966
Inputs=3386008
Outputs=407800
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 434164
drwxrwx--x. 8 root root 4096 5. Jun 06:48 .
drwxr-x--x. 38 root root 4096 4. Jun 20:03 ..
-rw-------. 1 root root 7284719 4. Jun 20:04 agis_ddmendpoints.json
-rw-------. 1 root root 4962487 4. Jun 20:04 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 4. Jun 20:03 .alrb
drwxr-xr-x. 3 root root 4096 4. Jun 20:03 APPS
drwxr-xr-x. 2 root root 4096 4. Jun 20:04 .arc
-rw-------. 1 root root 550 4. Jun 20:03 .asetup
-rw-------. 1 root root 2986 4. Jun 20:05 .asetup.save
-rw-------. 1 root root 494 5. Jun 06:48 BA9KDmHY3runShfckohDCDFpABFKDmABFKDm8ZuUDmABFKDm2G6d8n.diag
-rw-r--r--. 1 root root 0 4. Jun 20:03 boinc_lockfile
-rw-r--r--. 1 root root 8192 5. Jun 06:48 boinc_mmap_file
-rw-r--r--. 1 root root 537 5. Jun 06:47 boinc_task_state.xml
-rw-r--r--. 1 root root 374758613 4. Jun 20:03 EVNT.17323990._000202.pool.root.1
-rw-------. 1 root root 62590 5. Jun 06:48 heartbeat.json
-rw-r--r--. 1 root root 5470 4. Jun 20:03 init_data.xml
-rw-r--r--. 1 root root 248033 4. Jun 20:03 input.tar.gz
-rw-r--r--. 1 root root 112 4. Jun 20:03 job.xml
-rw-------. 1 root root 27099346 5. Jun 06:48 log.18251728._005253.job.log.1
-rw-------. 1 root root 2644293 5. Jun 06:47 log.18251728._005253.job.log.tgz.1
-rw-------. 1 root root 306 5. Jun 06:47 memory_monitor_summary.json
-rw-------. 1 root root 391 5. Jun 06:48 output.list
-rw-------. 1 4871 1028 2882 3. Jun 16:55 pandaJobData.out
drwxrwx---. 2 root root 4096 5. Jun 06:48 PanDA_Pilot-4370320697
drwxr-xr-x. 3 501 games 4096 29. Mai 14:16 pilot2
-rw-r--r--. 1 root root 238965 31. Mai 18:37 pilot2.tar.gz
-rw-------. 1 root root 27080168 5. Jun 06:48 pilotlog.txt
-rw-r--r--. 1 root root 4468 3. Jun 16:54 queuedata.json
-rw-r--r--. 1 root root 786 4. Jun 20:03 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 4. Jun 20:03 run_atlas
-rwx------. 1 4871 1028 15232 3. Jun 16:55 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 5. Jun 06:48 runtime_log
-rw-r--r--. 1 root root 7355 5. Jun 06:48 runtime_log.err
drwxrwx--x. 2 root root 4096 5. Jun 06:48 shared
-rw-r--r--. 1 root root 8714 4. Jun 20:03 start_atlas.sh
-rw-r--r--. 1 root root 16743 5. Jun 06:48 stderr.txt
-rw-r--r--. 1 root root 107 4. Jun 20:03 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 5. Jun 06:48 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
06:48:58 (19046): run_atlas exited; CPU time 38677.471130
06:48:58 (19046): called boinc_finish(0)
</stderr_txt>
]]>
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