| Name | VJ7MDmJnMsunShfckohDCDFpABFKDmABFKDmcHfVDmABFKDmNJqjZn_0 |
| Workunit | 1902569 |
| Created | 4 Jun 2019, 11:31:11 UTC |
| Sent | 4 Jun 2019, 13:28:43 UTC |
| Report deadline | 11 Jun 2019, 13:28:43 UTC |
| Received | 4 Jun 2019, 23:58:29 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 29 min 46 sec |
| CPU time | 10 hours 50 min 27 sec |
| Validate state | Valid |
| Credit | 174.89 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.92 GB |
| Peak swap size | 2.45 GB |
| Peak disk usage | 888.60 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
06:51:29 (27762): wrapper (7.7.26015): starting
06:51:29 (27762): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/36/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/36/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/36/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/36/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18251703._012134.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-05 15:37:20,137 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.29"
2019-06-05 15:37:20,138 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-05 15:37:20,139 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/36/PanDA_Pilot-4371582296/memory_monitor_summary.json
2019-06-05 15:37:20,141 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2123476, 'maxSwap': 0, 'totRCHAR': 1653772924, 'totRBYTES': 1647734784, 'totWCHAR': 117963367, 'totWBYTES': 128102400, 'maxVMEM': 3233228, 'maxPSS': 2114942}, 'Avg': {'avgRSS': 2075909, 'rateWCHAR': 3065, 'avgVMEM': 3173643, 'avgPSS': 2067160, 'rateRCHAR': 42969, 'avgSwap': 0, 'rateRBYTES': 42812, 'rateWBYTES': 3328}}
2019-06-05 15:37:20,141 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-05 15:37:20,141 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-05 15:37:20,141 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-05 15:37:20,141 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-05 15:37:20,141 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-05 15:37:20,142 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-05 15:37:20,142 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-05 15:37:20,142 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-05 15:37:20,142 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 7 s
2019-06-05 15:37:20,142 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38609 s
2019-06-05 15:37:20,142 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-06-05 15:37:20,142 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-05 15:37:20,142 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-05 15:37:20,143 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/36/PanDA_Pilot-4371582296/pandatracerlog.txt (ignoring)
2019-06-05 15:37:20,143 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/36/PanDA_Pilot-4371582296/pilotlog.txt
2019-06-05 15:37:22,496 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-05 15:37:22,578 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-05 15:37:20,137 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.29 B/s (using 620 data points, chi2=-78749965093.159637)
2019-06-05 15:37:20,137 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.29"
2019-06-05 15:37:20,138 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-05 15:37:20,139 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/36/PanDA_Pilot-4371582296/memory_monitor_summary.json
2019-06-05 15:37:20,141 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2123476, 'maxSwap': 0, 'totRCHAR': 1653772924, 'totRBYTES': 1647734784, 'totWCHAR': 117963367, 'totWBYTES': 128102400, 'maxVMEM': 3233228, 'maxPSS': 2114942}, 'Avg': {'avgRSS': 2075909, 'rateWCHAR': 3065, 'avgVMEM': 3173643, 'avgPSS': 2067160, 'rateRCHAR': 42969, 'avgSwap': 0, 'rateRBYTES': 42812, 'rateWBYTES': 3328}}
2019-06-05 15:37:20,141 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-05 15:37:20,141 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-05 15:37:20,141 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-05 15:37:20,141 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-05 15:37:20,141 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-05 15:37:20,142 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-05 15:37:20,142 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-05 15:37:20,142 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-05 15:37:20,142 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 7 s
2019-06-05 15:37:20,142 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38609 s
2019-06-05 15:37:20,142 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-06-05 15:37:20,142 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-05 15:37:20,142 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-05 15:37:20,143 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/36/PanDA_Pilot-4371582296/pandatracerlog.txt (ignoring)
2019-06-05 15:37:20,143 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/36/PanDA_Pilot-4371582296/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-05 15:37:22,581 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/36/heartbeat.json
2019-06-05 15:37:22,583 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4371582296 was dequeued from the monitored payloads queue
2019-06-05 15:37:23,615 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-05 15:37:23,615 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-05 15:37:23,615 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-05 15:37:23,616 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4371582296
2019-06-05 15:37:23,616 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18251703
2019-06-05 15:37:23,616 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-05 15:37:23,616 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-05 15:37:23,616 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-05 15:37:23,616 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-05 15:37:23,616 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-05 15:37:23,616 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-05 15:37:23,616 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-05 15:37:23,616 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-05 15:37:23,617 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 38854 s
2019-06-05 15:37:23,617 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-06-05 15:37:23,617 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-05 15:37:23,617 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 2001
2019-06-05 15:37:23,617 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-05 15:37:23,617 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-05 15:37:23,617 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-05 15:37:23,617 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-05 15:37:23,617 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-05 15:37:23,618 | INFO | retrieve | pilot.control.job | has_job_completed | job 4371582296 has completed
2019-06-05 15:37:23,618 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-05 15:37:23,618 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-05 15:37:33,669 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-05 15:37:33,671 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/36
2019-06-05 15:37:33,720 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14149484544 B)
2019-06-05 15:37:33,720 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-05 15:37:33,765 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-05 15:37:33,765 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-05 15:37:33,988 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-05 15:37:34,052 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-05 15:37:34,085 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-05 15:37:34,157 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-05 15:37:34,346 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-05 15:37:34,683 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-05 15:37:34,812 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-05 15:37:34,813 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-05 15:37:35,245 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-05 15:37:35,628 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-05 15:37:35,629 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-05 15:37:38,315 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-05 15:37:40,089 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s)
2019-06-05 15:37:40,090 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-05 15:37:40,091 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-05 15:37:40,091 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-05 15:37:40,092 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=38761.10s
KernelTime=1028.13s
UserTime=38690.19s
CPUUsage=102%
MaxResidentMemory=2011892kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9682
MinorPageFaults=18286452
Swaps=0
ForcedSwitches=561747
WaitSwitches=21113091
Inputs=3361288
Outputs=408232
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 435772
drwxrwx--x. 8 root root 4096 5. Jun 17:37 .
drwxr-x--x. 39 root root 4096 5. Jun 06:51 ..
-rw-------. 1 root root 7284719 5. Jun 06:52 agis_ddmendpoints.json
-rw-------. 1 root root 4977061 5. Jun 06:52 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 5. Jun 06:51 .alrb
drwxr-xr-x. 3 root root 4096 5. Jun 06:51 APPS
drwxr-xr-x. 2 root root 4096 5. Jun 06:52 .arc
-rw-------. 1 root root 550 5. Jun 06:51 .asetup
-rw-------. 1 root root 2986 5. Jun 06:53 .asetup.save
-rw-r--r--. 1 root root 0 5. Jun 06:51 boinc_lockfile
-rw-r--r--. 1 root root 8192 5. Jun 17:37 boinc_mmap_file
-rw-r--r--. 1 root root 537 5. Jun 17:36 boinc_task_state.xml
-rw-r--r--. 1 root root 376329191 5. Jun 06:51 EVNT.17323975._000242.pool.root.1
-rw-------. 1 root root 59970 5. Jun 17:37 heartbeat.json
-rw-r--r--. 1 root root 5470 5. Jun 06:51 init_data.xml
-rw-r--r--. 1 root root 248044 5. Jun 06:51 input.tar.gz
-rw-r--r--. 1 root root 112 5. Jun 06:51 job.xml
-rw-------. 1 root root 27116293 5. Jun 17:37 log.18251703._012134.job.log.1
-rw-------. 1 root root 2667492 5. Jun 17:37 log.18251703._012134.job.log.tgz.1
-rw-------. 1 root root 306 5. Jun 17:36 memory_monitor_summary.json
-rw-------. 1 root root 391 5. Jun 17:37 output.list
-rw-------. 1 4871 1028 2888 4. Jun 13:28 pandaJobData.out
drwxrwx---. 2 root root 4096 5. Jun 17:37 PanDA_Pilot-4371582296
drwxr-xr-x. 3 501 games 4096 29. Mai 14:16 pilot2
-rw-r--r--. 1 root root 238965 31. Mai 18:37 pilot2.tar.gz
-rw-------. 1 root root 27097115 5. Jun 17:37 pilotlog.txt
-rw-r--r--. 1 root root 4468 4. Jun 13:26 queuedata.json
-rw-r--r--. 1 root root 786 5. Jun 06:51 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 5. Jun 06:51 run_atlas
-rwx------. 1 4871 1028 15232 4. Jun 13:28 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 5. Jun 17:37 runtime_log
-rw-r--r--. 1 root root 7355 5. Jun 17:37 runtime_log.err
drwxrwx--x. 2 root root 4096 5. Jun 17:37 shared
-rw-r--r--. 1 root root 8714 5. Jun 06:51 start_atlas.sh
-rw-r--r--. 1 root root 16744 5. Jun 17:37 stderr.txt
-rw-------. 1 root root 494 5. Jun 17:37 VJ7MDmJnMsunShfckohDCDFpABFKDmABFKDmcHfVDmABFKDmNJqjZn.diag
-rw-r--r--. 1 root root 107 5. Jun 06:51 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 5. Jun 17:37 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
17:37:40 (27762): run_atlas exited; CPU time 38690.970078
17:37:40 (27762): called boinc_finish(0)
</stderr_txt>
]]>
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