| Name | TtkKDm2jXsunShfckohDCDFpABFKDmABFKDmyY5VDmABFKDmZdiBrm_0 |
| Workunit | 1902658 |
| Created | 4 Jun 2019, 23:10:31 UTC |
| Sent | 4 Jun 2019, 23:58:29 UTC |
| Report deadline | 11 Jun 2019, 23:58:29 UTC |
| Received | 5 Jun 2019, 10:15:24 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 16 min 55 sec |
| CPU time | 10 hours 36 min 37 sec |
| Validate state | Valid |
| Credit | 171.32 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.44 GB |
| Peak disk usage | 880.77 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
17:40:10 (3938): wrapper (7.7.26015): starting
17:40:10 (3938): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/37/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/37/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/37/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/37/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18251716._012373.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-06 02:12:29,089 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.29"
2019-06-06 02:12:29,089 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-06 02:12:29,090 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/37/PanDA_Pilot-4372451327/memory_monitor_summary.json
2019-06-06 02:12:29,091 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2111920, 'maxSwap': 0, 'totRCHAR': 1743407868, 'totRBYTES': 1671495680, 'totWCHAR': 113292204, 'totWBYTES': 123191296, 'maxVMEM': 3213300, 'maxPSS': 2103472}, 'Avg': {'avgRSS': 2073643, 'rateWCHAR': 3004, 'avgVMEM': 3175743, 'avgPSS': 2064883, 'rateRCHAR': 46234, 'avgSwap': 0, 'rateRBYTES': 44327, 'rateWBYTES': 3266}}
2019-06-06 02:12:29,091 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-06 02:12:29,092 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-06 02:12:29,092 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-06 02:12:29,092 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-06 02:12:29,092 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-06 02:12:29,092 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-06 02:12:29,092 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-06 02:12:29,092 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-06 02:12:29,092 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-06 02:12:29,092 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 37822 s
2019-06-06 02:12:29,093 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-06-06 02:12:29,093 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-06 02:12:29,093 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-06 02:12:29,093 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/37/PanDA_Pilot-4372451327/pandatracerlog.txt (ignoring)
2019-06-06 02:12:29,093 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/37/PanDA_Pilot-4372451327/pilotlog.txt
2019-06-06 02:12:31,428 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-06 02:12:31,505 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-06 02:12:29,088 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.29 B/s (using 607 data points, chi2=34613016348.538734)
2019-06-06 02:12:29,089 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.29"
2019-06-06 02:12:29,089 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-06 02:12:29,090 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/37/PanDA_Pilot-4372451327/memory_monitor_summary.json
2019-06-06 02:12:29,091 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2111920, 'maxSwap': 0, 'totRCHAR': 1743407868, 'totRBYTES': 1671495680, 'totWCHAR': 113292204, 'totWBYTES': 123191296, 'maxVMEM': 3213300, 'maxPSS': 2103472}, 'Avg': {'avgRSS': 2073643, 'rateWCHAR': 3004, 'avgVMEM': 3175743, 'avgPSS': 2064883, 'rateRCHAR': 46234, 'avgSwap': 0, 'rateRBYTES': 44327, 'rateWBYTES': 3266}}
2019-06-06 02:12:29,091 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-06 02:12:29,092 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-06 02:12:29,092 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-06 02:12:29,092 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-06 02:12:29,092 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-06 02:12:29,092 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-06 02:12:29,092 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-06 02:12:29,092 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-06 02:12:29,092 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-06 02:12:29,092 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 37822 s
2019-06-06 02:12:29,093 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-06-06 02:12:29,093 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-06 02:12:29,093 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-06 02:12:29,093 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/37/PanDA_Pilot-4372451327/pandatracerlog.txt (ignoring)
2019-06-06 02:12:29,093 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/37/PanDA_Pilot-4372451327/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-06 02:12:31,507 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/37/heartbeat.json
2019-06-06 02:12:31,507 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4372451327 was dequeued from the monitored payloads queue
2019-06-06 02:12:32,509 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-06 02:12:32,509 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-06 02:12:32,510 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-06 02:12:32,510 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4372451327
2019-06-06 02:12:32,510 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18251716
2019-06-06 02:12:32,510 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-06 02:12:32,510 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-06 02:12:32,511 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-06 02:12:32,511 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-06 02:12:32,511 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-06 02:12:32,511 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-06 02:12:32,511 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-06 02:12:32,511 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-06 02:12:32,511 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 38030 s
2019-06-06 02:12:32,512 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-06-06 02:12:32,512 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-06 02:12:32,512 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 10615
2019-06-06 02:12:32,512 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-06 02:12:32,512 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-06 02:12:32,512 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-06 02:12:32,512 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-06 02:12:32,512 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-06 02:12:32,512 | INFO | retrieve | pilot.control.job | has_job_completed | job 4372451327 has completed
2019-06-06 02:12:32,512 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-06 02:12:32,513 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-06 02:12:42,536 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-06 02:12:42,536 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/37
2019-06-06 02:12:42,568 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14317256704 B)
2019-06-06 02:12:42,569 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-06 02:12:42,570 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-06 02:12:42,753 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-06 02:12:43,006 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-06 02:12:43,009 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-06 02:12:43,011 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-06 02:12:43,093 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-06 02:12:43,093 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-06 02:12:43,212 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-06 02:12:44,126 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-06 02:12:44,126 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-06 02:12:44,549 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-06 02:12:44,550 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-06 02:12:45,114 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-06 02:12:48,221 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-06 02:13:08,258 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 67 s)
2019-06-06 02:13:08,260 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-06 02:13:08,261 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-06 02:13:08,262 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-06 02:13:08,262 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=37973.17s
KernelTime=1054.31s
UserTime=37874.96s
CPUUsage=102%
MaxResidentMemory=2002856kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9656
MinorPageFaults=17997015
Swaps=0
ForcedSwitches=545433
WaitSwitches=20936775
Inputs=3354880
Outputs=396488
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 432748
drwxrwx--x. 8 root root 4096 6. Jun 04:13 .
drwxr-x--x. 40 root root 4096 5. Jun 17:40 ..
-rw-------. 1 root root 7284719 5. Jun 17:40 agis_ddmendpoints.json
-rw-------. 1 root root 4978468 5. Jun 17:40 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 5. Jun 17:40 .alrb
drwxr-xr-x. 3 root root 4096 5. Jun 17:40 APPS
drwxr-xr-x. 2 root root 4096 5. Jun 17:40 .arc
-rw-------. 1 root root 550 5. Jun 17:40 .asetup
-rw-------. 1 root root 2986 5. Jun 17:41 .asetup.save
-rw-r--r--. 1 root root 0 5. Jun 17:40 boinc_lockfile
-rw-r--r--. 1 root root 8192 6. Jun 04:12 boinc_mmap_file
-rw-r--r--. 1 root root 537 6. Jun 04:11 boinc_task_state.xml
-rw-r--r--. 1 root root 374368119 5. Jun 17:40 EVNT.17323984._000300.pool.root.1
-rw-------. 1 root root 49116 6. Jun 04:12 heartbeat.json
-rw-r--r--. 1 root root 5470 5. Jun 17:40 init_data.xml
-rw-r--r--. 1 root root 248039 5. Jun 17:40 input.tar.gz
-rw-r--r--. 1 root root 112 5. Jun 17:40 job.xml
-rw-------. 1 root root 26593940 6. Jun 04:13 log.18251716._012373.job.log.1
-rw-------. 1 root root 2600466 6. Jun 04:12 log.18251716._012373.job.log.tgz.1
-rw-------. 1 root root 306 6. Jun 04:11 memory_monitor_summary.json
-rw-------. 1 root root 391 6. Jun 04:13 output.list
-rw-------. 1 4871 1028 2886 5. Jun 01:09 pandaJobData.out
drwxrwx---. 2 root root 4096 6. Jun 04:12 PanDA_Pilot-4372451327
drwxr-xr-x. 3 501 games 4096 29. Mai 14:16 pilot2
-rw-r--r--. 1 root root 238965 31. Mai 18:37 pilot2.tar.gz
-rw-------. 1 root root 26574762 6. Jun 04:13 pilotlog.txt
-rw-r--r--. 1 root root 4468 5. Jun 01:09 queuedata.json
-rw-r--r--. 1 root root 786 5. Jun 17:40 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 5. Jun 17:40 run_atlas
-rwx------. 1 4871 1028 15232 5. Jun 01:09 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 6. Jun 04:13 runtime_log
-rw-r--r--. 1 root root 7355 6. Jun 04:13 runtime_log.err
drwxrwx--x. 2 root root 4096 6. Jun 04:13 shared
-rw-r--r--. 1 root root 8714 5. Jun 17:40 start_atlas.sh
-rw-r--r--. 1 root root 16742 6. Jun 04:13 stderr.txt
-rw-------. 1 root root 494 6. Jun 04:13 TtkKDm2jXsunShfckohDCDFpABFKDmABFKDmyY5VDmABFKDmZdiBrm.diag
-rw-r--r--. 1 root root 107 5. Jun 17:40 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 6. Jun 04:12 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
04:13:08 (3938): run_atlas exited; CPU time 37875.428059
04:13:08 (3938): called boinc_finish(0)
</stderr_txt>
]]>
©2024 CERN