| Name | locMDmATWsunShfckohDCDFpABFKDmABFKDm4R2VDmABFKDmPMyvUo_1 |
| Workunit | 1902653 |
| Created | 5 Jun 2019, 3:22:53 UTC |
| Sent | 5 Jun 2019, 10:15:24 UTC |
| Report deadline | 12 Jun 2019, 10:15:24 UTC |
| Received | 6 Jun 2019, 6:48:18 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 22 min 58 sec |
| CPU time | 10 hours 29 min 52 sec |
| Validate state | Valid |
| Credit | 173.01 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.44 GB |
| Peak disk usage | 883.09 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
04:15:56 (12068): wrapper (7.7.26015): starting
04:15:56 (12068): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/38/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/38/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/38/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/38/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18251716._012051.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-06 12:41:30,492 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.36"
2019-06-06 12:41:30,492 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-06 12:41:30,494 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/38/PanDA_Pilot-4372371040/memory_monitor_summary.json
2019-06-06 12:41:30,495 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2112660, 'maxSwap': 0, 'totRCHAR': 1730468984, 'totRBYTES': 1689989120, 'totWCHAR': 114583340, 'totWBYTES': 124407808, 'maxVMEM': 3218124, 'maxPSS': 2104212}, 'Avg': {'avgRSS': 2070473, 'rateWCHAR': 3072, 'avgVMEM': 3171540, 'avgPSS': 2061721, 'rateRCHAR': 46395, 'avgSwap': 0, 'rateRBYTES': 45310, 'rateWBYTES': 3335}}
2019-06-06 12:41:30,496 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-06 12:41:30,496 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-06 12:41:30,497 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-06 12:41:30,497 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-06 12:41:30,497 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-06-06 12:41:30,497 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-06 12:41:30,497 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-06 12:41:30,497 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-06 12:41:30,497 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-06 12:41:30,498 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 37412 s
2019-06-06 12:41:30,498 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-06-06 12:41:30,498 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-06 12:41:30,498 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-06 12:41:30,498 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/38/PanDA_Pilot-4372371040/pandatracerlog.txt (ignoring)
2019-06-06 12:41:30,499 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/38/PanDA_Pilot-4372371040/pilotlog.txt
2019-06-06 12:41:32,895 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-06 12:41:32,965 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-06 12:41:30,492 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.36 B/s (using 601 data points, chi2=-308632175090.849060)
2019-06-06 12:41:30,492 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.36"
2019-06-06 12:41:30,492 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-06 12:41:30,494 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/38/PanDA_Pilot-4372371040/memory_monitor_summary.json
2019-06-06 12:41:30,495 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2112660, 'maxSwap': 0, 'totRCHAR': 1730468984, 'totRBYTES': 1689989120, 'totWCHAR': 114583340, 'totWBYTES': 124407808, 'maxVMEM': 3218124, 'maxPSS': 2104212}, 'Avg': {'avgRSS': 2070473, 'rateWCHAR': 3072, 'avgVMEM': 3171540, 'avgPSS': 2061721, 'rateRCHAR': 46395, 'avgSwap': 0, 'rateRBYTES': 45310, 'rateWBYTES': 3335}}
2019-06-06 12:41:30,496 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-06 12:41:30,496 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-06 12:41:30,497 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-06 12:41:30,497 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-06 12:41:30,497 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-06-06 12:41:30,497 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-06 12:41:30,497 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-06 12:41:30,497 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-06 12:41:30,497 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-06 12:41:30,498 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 37412 s
2019-06-06 12:41:30,498 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-06-06 12:41:30,498 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-06 12:41:30,498 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-06 12:41:30,498 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/38/PanDA_Pilot-4372371040/pandatracerlog.txt (ignoring)
2019-06-06 12:41:30,499 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/38/PanDA_Pilot-4372371040/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-06 12:41:32,966 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/38/heartbeat.json
2019-06-06 12:41:32,966 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4372371040 was dequeued from the monitored payloads queue
2019-06-06 12:41:33,973 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-06 12:41:33,973 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-06 12:41:33,973 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-06 12:41:33,974 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4372371040
2019-06-06 12:41:33,974 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18251716
2019-06-06 12:41:33,974 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-06 12:41:33,974 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-06 12:41:33,974 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-06 12:41:33,974 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-06 12:41:33,974 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-06 12:41:33,974 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-06 12:41:33,974 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-06 12:41:33,975 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-06 12:41:33,975 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 37625 s
2019-06-06 12:41:33,975 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-06-06 12:41:33,975 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-06 12:41:33,975 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 18729
2019-06-06 12:41:33,975 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-06 12:41:33,975 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-06 12:41:33,975 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-06 12:41:33,975 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-06 12:41:33,976 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-06 12:41:33,976 | INFO | retrieve | pilot.control.job | has_job_completed | job 4372371040 has completed
2019-06-06 12:41:33,976 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-06 12:41:33,976 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-06 12:41:44,012 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-06 12:41:44,012 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/38
2019-06-06 12:41:44,045 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14299430912 B)
2019-06-06 12:41:44,046 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-06 12:41:44,059 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-06 12:41:44,060 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-06 12:41:44,062 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-06 12:41:44,089 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-06 12:41:44,217 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-06 12:41:44,356 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-06 12:41:44,365 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-06 12:41:44,477 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-06 12:41:44,610 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-06 12:41:45,063 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-06 12:41:45,064 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-06 12:41:45,998 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-06 12:41:45,998 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-06 12:41:47,171 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-06 12:42:15,167 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s)
2019-06-06 12:42:15,168 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-06 12:42:15,168 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-06 12:42:15,169 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-06 12:42:15,169 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=37570.17s
KernelTime=1015.02s
UserTime=37488.84s
CPUUsage=102%
MaxResidentMemory=2001968kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9782
MinorPageFaults=17870075
Swaps=0
ForcedSwitches=513444
WaitSwitches=20223803
Inputs=3384464
Outputs=397168
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 434304
drwxrwx--x. 8 root root 4096 6. Jun 14:42 .
drwxr-x--x. 41 root root 4096 6. Jun 04:15 ..
-rw-------. 1 root root 7284719 6. Jun 04:16 agis_ddmendpoints.json
-rw-------. 1 root root 4959489 6. Jun 04:16 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 6. Jun 04:16 .alrb
drwxr-xr-x. 3 root root 4096 6. Jun 04:16 APPS
drwxr-xr-x. 2 root root 4096 6. Jun 04:16 .arc
-rw-------. 1 root root 550 6. Jun 04:16 .asetup
-rw-------. 1 root root 2986 6. Jun 04:17 .asetup.save
-rw-r--r--. 1 root root 0 6. Jun 04:15 boinc_lockfile
-rw-r--r--. 1 root root 8192 6. Jun 14:41 boinc_mmap_file
-rw-r--r--. 1 root root 537 6. Jun 14:40 boinc_task_state.xml
-rw-r--r--. 1 root root 376494019 6. Jun 04:16 EVNT.17323984._000294.pool.root.1
-rw-------. 1 root root 59832 6. Jun 14:41 heartbeat.json
-rw-r--r--. 1 root root 5470 6. Jun 04:15 init_data.xml
-rw-r--r--. 1 root root 248036 6. Jun 04:16 input.tar.gz
-rw-r--r--. 1 root root 112 6. Jun 04:15 job.xml
-rw-------. 1 root root 494 6. Jun 14:42 locMDmATWsunShfckohDCDFpABFKDmABFKDm4R2VDmABFKDmPMyvUo.diag
-rw-------. 1 root root 26332400 6. Jun 14:42 log.18251716._012051.job.log.1
-rw-------. 1 root root 2590166 6. Jun 14:41 log.18251716._012051.job.log.tgz.1
-rw-------. 1 root root 306 6. Jun 14:40 memory_monitor_summary.json
-rw-------. 1 root root 391 6. Jun 14:42 output.list
-rw-------. 1 4871 1028 2886 4. Jun 23:48 pandaJobData.out
drwxrwx---. 2 root root 4096 6. Jun 14:41 PanDA_Pilot-4372371040
drwxr-xr-x. 3 501 games 4096 29. Mai 14:16 pilot2
-rw-r--r--. 1 root root 238965 31. Mai 18:37 pilot2.tar.gz
-rw-------. 1 root root 26313222 6. Jun 14:42 pilotlog.txt
-rw-r--r--. 1 root root 4468 4. Jun 23:45 queuedata.json
-rw-r--r--. 1 root root 786 6. Jun 04:16 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 6. Jun 04:15 run_atlas
-rwx------. 1 4871 1028 15232 4. Jun 23:48 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 6. Jun 14:42 runtime_log
-rw-r--r--. 1 root root 7355 6. Jun 14:42 runtime_log.err
drwxrwx--x. 2 root root 4096 6. Jun 14:42 shared
-rw-r--r--. 1 root root 8714 6. Jun 04:16 start_atlas.sh
-rw-r--r--. 1 root root 16746 6. Jun 14:42 stderr.txt
-rw-r--r--. 1 root root 107 6. Jun 04:15 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 6. Jun 14:41 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
14:42:15 (12068): run_atlas exited; CPU time 37489.259766
14:42:15 (12068): called boinc_finish(0)
</stderr_txt>
]]>
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