| Name | uRzMDm0Q7qunShfckohDCDFpABFKDmABFKDmEYcSDmABFKDmcOnQtn_2 |
| Workunit | 1901645 |
| Created | 5 Jun 2019, 10:35:40 UTC |
| Sent | 7 Jun 2019, 22:30:45 UTC |
| Report deadline | 14 Jun 2019, 22:30:45 UTC |
| Received | 8 Jun 2019, 8:55:04 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 24 min 19 sec |
| CPU time | 10 hours 44 min 50 sec |
| Validate state | Valid |
| Credit | 173.38 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.84 GB |
| Peak disk usage | 885.90 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
18:19:20 (14184): wrapper (7.7.26015): starting
18:19:20 (14184): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/41/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/41/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/41/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/41/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18099335._038914.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-09 02:59:19,346 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-09 02:59:19,348 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/41/PanDA_Pilot-4366428999/memory_monitor_summary.json
2019-06-09 02:59:19,349 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2113532, 'maxSwap': 0, 'totRCHAR': 1761023995, 'totRBYTES': 1682591744, 'totWCHAR': 116296806, 'totWBYTES': 126570496, 'maxVMEM': 3224564, 'maxPSS': 2105037}, 'Avg': {'avgRSS': 2071374, 'rateWCHAR': 3046, 'avgVMEM': 3171634, 'avgPSS': 2062632, 'rateRCHAR': 46125, 'avgSwap': 0, 'rateRBYTES': 44071, 'rateWBYTES': 3315}}
2019-06-09 02:59:19,349 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-09 02:59:19,349 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-09 02:59:19,349 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-09 02:59:19,350 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-09 02:59:19,350 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-09 02:59:19,350 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-09 02:59:19,350 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-09 02:59:19,350 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-09 02:59:19,350 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 7 s
2019-06-09 02:59:19,350 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38285 s
2019-06-09 02:59:19,350 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-06-09 02:59:19,350 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-09 02:59:19,351 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-09 02:59:19,351 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/41/PanDA_Pilot-4366428999/pandatracerlog.txt (ignoring)
2019-06-09 02:59:19,351 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/41/PanDA_Pilot-4366428999/pilotlog.txt
2019-06-09 02:59:21,296 | INFO | monitor | pilot.control.monitor | control | 38365 s have passed since pilot start
2019-06-09 02:59:21,758 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-09 02:59:21,834 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-09 02:59:19,346 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 2.77 B/s (using 616 data points, chi2=30637975828.827213)
2019-06-09 02:59:19,346 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=2.77"
2019-06-09 02:59:19,346 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-09 02:59:19,348 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/41/PanDA_Pilot-4366428999/memory_monitor_summary.json
2019-06-09 02:59:19,349 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2113532, 'maxSwap': 0, 'totRCHAR': 1761023995, 'totRBYTES': 1682591744, 'totWCHAR': 116296806, 'totWBYTES': 126570496, 'maxVMEM': 3224564, 'maxPSS': 2105037}, 'Avg': {'avgRSS': 2071374, 'rateWCHAR': 3046, 'avgVMEM': 3171634, 'avgPSS': 2062632, 'rateRCHAR': 46125, 'avgSwap': 0, 'rateRBYTES': 44071, 'rateWBYTES': 3315}}
2019-06-09 02:59:19,349 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-09 02:59:19,349 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-09 02:59:19,349 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-09 02:59:19,350 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-09 02:59:19,350 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-09 02:59:19,350 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-09 02:59:19,350 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-09 02:59:19,350 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-09 02:59:19,350 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 7 s
2019-06-09 02:59:19,350 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38285 s
2019-06-09 02:59:19,350 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-06-09 02:59:19,350 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-09 02:59:19,351 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-09 02:59:19,351 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/41/PanDA_Pilot-4366428999/pandatracerlog.txt (ignoring)
2019-06-09 02:59:19,351 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/41/PanDA_Pilot-4366428999/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-09 02:59:21,836 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/41/heartbeat.json
2019-06-09 02:59:21,836 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4366428999 was dequeued from the monitored payloads queue
2019-06-09 02:59:22,979 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-09 02:59:22,980 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-09 02:59:22,980 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-09 02:59:22,980 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4366428999
2019-06-09 02:59:22,980 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18099335
2019-06-09 02:59:22,980 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-09 02:59:22,980 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-09 02:59:22,981 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-09 02:59:22,981 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-09 02:59:22,981 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-09 02:59:22,981 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-09 02:59:22,981 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-09 02:59:22,981 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-09 02:59:22,981 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 38446 s
2019-06-09 02:59:22,981 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-06-09 02:59:22,981 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-09 02:59:22,982 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 20377
2019-06-09 02:59:22,982 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-09 02:59:22,982 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-09 02:59:22,982 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-09 02:59:22,982 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-09 02:59:22,982 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-09 02:59:22,982 | INFO | retrieve | pilot.control.job | has_job_completed | job 4366428999 has completed
2019-06-09 02:59:22,982 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-09 02:59:22,982 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-09 02:59:33,030 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-09 02:59:33,030 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/41
2019-06-09 02:59:33,072 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14346616832 B)
2019-06-09 02:59:33,073 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-09 02:59:33,118 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-09 02:59:33,120 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-09 02:59:33,120 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-09 02:59:33,124 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-09 02:59:33,273 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-09 02:59:33,479 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-09 02:59:33,512 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-09 02:59:33,585 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-09 02:59:33,863 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-09 02:59:34,125 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-09 02:59:34,127 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-09 02:59:34,840 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-09 02:59:34,842 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-09 02:59:36,142 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-09 02:59:39,653 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-06-09 02:59:39,654 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-09 02:59:39,655 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-09 02:59:39,655 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-09 02:59:39,655 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=38413.68s
KernelTime=955.40s
UserTime=38338.79s
CPUUsage=102%
MaxResidentMemory=2004612kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9708
MinorPageFaults=17862996
Swaps=0
ForcedSwitches=442981
WaitSwitches=19120715
Inputs=3361568
Outputs=405840
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 435188
drwxrwx--x. 7 root root 4096 9. Jun 04:59 .
drwxr-x--x. 44 root root 4096 8. Jun 18:19 ..
-rw-------. 1 root root 7317447 8. Jun 18:19 agis_ddmendpoints.json
-rw-------. 1 root root 4955765 8. Jun 18:19 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 8. Jun 18:19 .alrb
drwxr-xr-x. 3 root root 4096 8. Jun 18:19 APPS
-rw-------. 1 root root 550 8. Jun 18:19 .asetup
-rw-------. 1 root root 2986 8. Jun 18:20 .asetup.save
-rw-r--r--. 1 root root 0 8. Jun 18:19 boinc_lockfile
-rw-r--r--. 1 root root 8192 9. Jun 04:59 boinc_mmap_file
-rw-r--r--. 1 root root 537 9. Jun 04:58 boinc_task_state.xml
-rw-r--r--. 1 root root 375475998 8. Jun 18:19 EVNT.17323946._000748.pool.root.1
-rw-------. 1 root root 58071 9. Jun 04:59 heartbeat.json
-rw-r--r--. 1 root root 5470 8. Jun 18:19 init_data.xml
-rw-r--r--. 1 root root 247992 8. Jun 18:19 input.tar.gz
-rw-r--r--. 1 root root 112 8. Jun 18:19 job.xml
-rw-------. 1 root root 27241614 9. Jun 04:59 log.18099335._038914.job.log.1
-rw-------. 1 root root 2666747 9. Jun 04:59 log.18099335._038914.job.log.tgz.1
-rw-------. 1 root root 306 9. Jun 04:58 memory_monitor_summary.json
-rw-------. 1 root root 391 9. Jun 04:59 output.list
-rw-------. 1 4871 1028 2886 1. Jun 02:52 pandaJobData.out
drwxrwx---. 2 root root 4096 9. Jun 04:59 PanDA_Pilot-4366428999
drwxr-xr-x. 3 501 games 4096 29. Mai 14:16 pilot2
-rw-r--r--. 1 root root 238965 31. Mai 18:37 pilot2.tar.gz
-rw-------. 1 root root 27226525 9. Jun 04:59 pilotlog.txt
-rw-r--r--. 1 root root 4444 1. Jun 02:50 queuedata.json
-rw-r--r--. 1 root root 786 8. Jun 18:19 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 8. Jun 18:19 run_atlas
-rwx------. 1 4871 1028 14753 1. Jun 02:52 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 9. Jun 04:59 runtime_log
-rw-r--r--. 1 root root 7355 9. Jun 04:59 runtime_log.err
drwxrwx--x. 2 root root 4096 9. Jun 04:59 shared
-rw-r--r--. 1 root root 8714 8. Jun 18:19 start_atlas.sh
-rw-r--r--. 1 root root 16745 9. Jun 04:59 stderr.txt
-rw-------. 1 root root 493 9. Jun 04:59 uRzMDm0Q7qunShfckohDCDFpABFKDmABFKDmEYcSDmABFKDmcOnQtn.diag
-rw-r--r--. 1 root root 107 8. Jun 18:19 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 9. Jun 04:59 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
04:59:40 (14184): run_atlas exited; CPU time 38339.214553
04:59:40 (14184): called boinc_finish(0)
</stderr_txt>
]]>
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