Name | vQvNDmQBEtunShfckohDCDFpABFKDmABFKDm4JiXDmABFKDmg2nYbm_0 |
Workunit | 1902974 |
Created | 6 Jun 2019, 20:29:31 UTC |
Sent | 6 Jun 2019, 20:37:49 UTC |
Report deadline | 13 Jun 2019, 20:37:49 UTC |
Received | 7 Jun 2019, 12:17:05 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 2244 |
Run time | 10 hours 43 min 58 sec |
CPU time | 10 hours 48 min 49 sec |
Validate state | Valid |
Credit | 178.84 |
Device peak FLOPS | 2.00 GFLOPS |
Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.91 GB |
Peak swap size | 2.44 GB |
Peak disk usage | 896.13 MB |
<core_client_version>7.5.1</core_client_version> <![CDATA[ <stderr_txt> 20:59:26 (26315): wrapper (7.7.26015): starting 20:59:26 (26315): wrapper: running run_atlas (--nthreads 1) singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img sys.argv = ['run_atlas', '--nthreads', '1'] THREADS=1 Checking for CVMFS CVMFS is installed OS:Scientific Linux release 6.10 (Carbon) This is SLC or CentOS release 6, run the atlas job without Singularity copy /root/Downloads/BOINC/slots/0/shared/input.tar.gz copy /root/Downloads/BOINC/slots/0/shared/start_atlas.sh copy /root/Downloads/BOINC/slots/0/shared/ATLAS.root_0 copy /root/Downloads/BOINC/slots/0/shared/RTE.tar.gz start atlas job with cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18251691._024187.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-06-08 05:43:49,817 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.41" 2019-06-08 05:43:49,817 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events 2019-06-08 05:43:49,818 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/0/PanDA_Pilot-4374638990/memory_monitor_summary.json 2019-06-08 05:43:49,820 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2116676, 'maxSwap': 0, 'totRCHAR': 1655773707, 'totRBYTES': 1678708736, 'totWCHAR': 118234744, 'totWBYTES': 128397312, 'maxVMEM': 3228132, 'maxPSS': 2107726}, 'Avg': {'avgRSS': 2074413, 'rateWCHAR': 3078, 'avgVMEM': 3171607, 'avgPSS': 2065648, 'rateRCHAR': 43112, 'avgSwap': 0, 'rateRBYTES': 43709, 'rateWBYTES': 3343}} 2019-06-08 05:43:49,820 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json 2019-06-08 05:43:49,820 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json 2019-06-08 05:43:49,820 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | .............................. 2019-06-08 05:43:49,821 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements: 2019-06-08 05:43:49,821 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s 2019-06-08 05:43:49,821 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s 2019-06-08 05:43:49,821 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s 2019-06-08 05:43:49,821 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s 2019-06-08 05:43:49,821 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s 2019-06-08 05:43:49,821 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38534 s 2019-06-08 05:43:49,821 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s 2019-06-08 05:43:49,821 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | .............................. 2019-06-08 05:43:49,822 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog') 2019-06-08 05:43:49,822 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/0/PanDA_Pilot-4374638990/pandatracerlog.txt (ignoring) 2019-06-08 05:43:49,822 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/0/PanDA_Pilot-4374638990/pilotlog.txt 2019-06-08 05:43:52,171 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt: 2019-06-08 05:43:52,238 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log: - Log from pilotlog.txt -2019-06-08 05:43:49,817 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.41 B/s (using 618 data points, chi2=42596153160.079147) 2019-06-08 05:43:49,817 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.41" 2019-06-08 05:43:49,817 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events 2019-06-08 05:43:49,818 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/0/PanDA_Pilot-4374638990/memory_monitor_summary.json 2019-06-08 05:43:49,820 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2116676, 'maxSwap': 0, 'totRCHAR': 1655773707, 'totRBYTES': 1678708736, 'totWCHAR': 118234744, 'totWBYTES': 128397312, 'maxVMEM': 3228132, 'maxPSS': 2107726}, 'Avg': {'avgRSS': 2074413, 'rateWCHAR': 3078, 'avgVMEM': 3171607, 'avgPSS': 2065648, 'rateRCHAR': 43112, 'avgSwap': 0, 'rateRBYTES': 43709, 'rateWBYTES': 3343}} 2019-06-08 05:43:49,820 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json 2019-06-08 05:43:49,820 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json 2019-06-08 05:43:49,820 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | .............................. 2019-06-08 05:43:49,821 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements: 2019-06-08 05:43:49,821 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s 2019-06-08 05:43:49,821 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s 2019-06-08 05:43:49,821 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s 2019-06-08 05:43:49,821 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s 2019-06-08 05:43:49,821 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s 2019-06-08 05:43:49,821 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38534 s 2019-06-08 05:43:49,821 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s 2019-06-08 05:43:49,821 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | .............................. 2019-06-08 05:43:49,822 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog') 2019-06-08 05:43:49,822 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/0/PanDA_Pilot-4374638990/pandatracerlog.txt (ignoring) 2019-06-08 05:43:49,822 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/0/PanDA_Pilot-4374638990/pilotlog.txt - Error messages from pilotlog.txt - "CRITICAL": 0, "ERROR": 0, "FATAL": 0, 2019-06-08 05:43:52,240 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/0/heartbeat.json 2019-06-08 05:43:52,240 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4374638990 was dequeued from the monitored payloads queue 2019-06-08 05:43:53,173 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-06-08 05:43:53,175 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-06-08 05:43:53,175 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-06-08 05:43:53,175 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4374638990 2019-06-08 05:43:53,175 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18251691 2019-06-08 05:43:53,176 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-06-08 05:43:53,177 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-06-08 05:43:53,179 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-06-08 05:43:53,179 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-06-08 05:43:53,179 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-06-08 05:43:53,179 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-06-08 05:43:53,179 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-06-08 05:43:53,180 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-06-08 05:43:53,180 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 38744 s 2019-06-08 05:43:53,180 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0 2019-06-08 05:43:53,180 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-06-08 05:43:53,180 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 819 2019-06-08 05:43:53,181 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None 2019-06-08 05:43:53,181 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1 2019-06-08 05:43:53,181 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-06-08 05:43:53,181 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-06-08 05:43:53,181 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-06-08 05:43:53,181 | INFO | retrieve | pilot.control.job | has_job_completed | job 4374638990 has completed 2019-06-08 05:43:53,181 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-06-08 05:43:53,181 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-06-08 05:44:03,223 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-06-08 05:44:03,223 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/0 2019-06-08 05:44:03,303 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14143193088 B) 2019-06-08 05:44:03,303 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-06-08 05:44:03,494 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-06-08 05:44:03,541 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished 2019-06-08 05:44:03,544 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-06-08 05:44:03,544 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort 2019-06-08 05:44:03,687 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-06-08 05:44:03,714 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-06-08 05:44:03,815 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set 2019-06-08 05:44:03,843 | INFO | monitor | pilot.control.monitor | control | monitor control has ended 2019-06-08 05:44:04,639 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting 2019-06-08 05:44:04,640 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished 2019-06-08 05:44:05,646 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-06-08 05:44:05,646 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished 2019-06-08 05:44:05,680 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-06-08 05:44:08,807 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished 2019-06-08 05:44:35,288 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-06-08 05:44:35,291 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished 2019-06-08 05:44:35,291 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-06-08 05:44:35,292 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-06-08 05:44:35,292 | INFO | MainThread | root | wrap_up | pilot has finished ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=38694.27s KernelTime=1024.29s UserTime=38626.24s CPUUsage=102% MaxResidentMemory=2006552kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=9713 MinorPageFaults=18567037 Swaps=0 ForcedSwitches=534969 WaitSwitches=21111139 Inputs=3371456 Outputs=409720 SocketReceived=0 SocketSent=0 Signals=0 nodename=maeax@APU8S exitcode=0 ******************************WorkDir*********************** insgesamt 440160 drwxrwx--x. 8 root root 4096 8. Jun 07:44 . drwxr-x--x. 42 root root 4096 6. Jun 19:40 .. -rw-------. 1 root root 7317447 7. Jun 21:00 agis_ddmendpoints.json -rw-------. 1 root root 4955219 7. Jun 21:00 agis_schedconf.cvmfs.json drwx------. 2 root root 4096 7. Jun 20:59 .alrb drwxr-xr-x. 3 root root 4096 7. Jun 20:59 APPS drwxr-xr-x. 2 root root 4096 7. Jun 21:00 .arc -rw-------. 1 root root 549 7. Jun 20:59 .asetup -rw-------. 1 root root 2985 7. Jun 21:01 .asetup.save -rw-r--r--. 1 root root 0 7. Jun 20:59 boinc_lockfile -rw-r--r--. 1 root root 8192 8. Jun 07:44 boinc_mmap_file -rw-r--r--. 1 root root 537 8. Jun 07:43 boinc_task_state.xml -rw-r--r--. 1 root root 380602811 7. Jun 20:59 EVNT.17323970._000573.pool.root.1 -rw-------. 1 root root 57204 8. Jun 07:43 heartbeat.json -rw-r--r--. 1 root root 5469 7. Jun 20:59 init_data.xml -rw-r--r--. 1 root root 248042 7. Jun 20:59 input.tar.gz -rw-r--r--. 1 root root 112 7. Jun 20:59 job.xml -rw-------. 1 root root 27226293 8. Jun 07:44 log.18251691._024187.job.log.1 -rw-------. 1 root root 2665953 8. Jun 07:43 log.18251691._024187.job.log.tgz.1 -rw-------. 1 root root 306 8. Jun 07:43 memory_monitor_summary.json -rw-------. 1 root root 391 8. Jun 07:44 output.list -rw-------. 1 4871 1028 2887 6. Jun 22:28 pandaJobData.out drwxrwx---. 2 root root 4096 8. Jun 07:43 PanDA_Pilot-4374638990 drwxr-xr-x. 3 501 games 4096 29. Mai 14:16 pilot2 -rw-r--r--. 1 root root 238965 31. Mai 18:37 pilot2.tar.gz -rw-------. 1 root root 27207127 8. Jun 07:44 pilotlog.txt -rw-r--r--. 1 root root 4468 6. Jun 22:25 queuedata.json -rw-r--r--. 1 root root 786 7. Jun 20:59 RTE.tar.gz -rwxr-xr-x. 1 root root 8512 7. Jun 20:59 run_atlas -rwx------. 1 4871 1028 15232 6. Jun 22:28 runpilot2-wrapper.sh -rw-r--r--. 1 root root 692 8. Jun 07:44 runtime_log -rw-r--r--. 1 root root 7327 8. Jun 07:44 runtime_log.err drwxrwx--x. 2 root root 4096 8. Jun 07:44 shared -rw-r--r--. 1 root root 8714 7. Jun 20:59 start_atlas.sh -rw-r--r--. 1 root root 16730 8. Jun 07:44 stderr.txt -rw-------. 1 root root 494 8. Jun 07:44 vQvNDmQBEtunShfckohDCDFpABFKDmABFKDm4JiXDmABFKDmg2nYbm.diag -rw-r--r--. 1 root root 107 7. Jun 20:59 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r--. 1 root root 28 8. Jun 07:44 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 07:44:36 (26315): run_atlas exited; CPU time 38626.716846 07:44:36 (26315): called boinc_finish(0) </stderr_txt> ]]>
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