| Name | 086KDm4TLtunShfckohDCDFpABFKDmABFKDmR6zXDmABFKDmW83N8m_0 |
| Workunit | 1903047 |
| Created | 7 Jun 2019, 4:16:45 UTC |
| Sent | 8 Jun 2019, 8:55:04 UTC |
| Report deadline | 15 Jun 2019, 8:55:04 UTC |
| Received | 8 Jun 2019, 19:27:20 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 32 min 16 sec |
| CPU time | 10 hours 52 min 7 sec |
| Validate state | Valid |
| Credit | 175.59 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.45 GB |
| Peak disk usage | 888.53 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
05:01:59 (24468): wrapper (7.7.26015): starting
05:01:59 (24468): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/42/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/42/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/42/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/42/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18251703._024568.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-09 13:50:28,716 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.82"
2019-06-09 13:50:28,716 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-09 13:50:28,717 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/42/PanDA_Pilot-4375693224/memory_monitor_summary.json
2019-06-09 13:50:28,719 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2117228, 'maxSwap': 4, 'totRCHAR': 1656607891, 'totRBYTES': 1639710720, 'totWCHAR': 116924267, 'totWBYTES': 127184896, 'maxVMEM': 3234100, 'maxPSS': 2108766}, 'Avg': {'avgRSS': 2072851, 'rateWCHAR': 3026, 'avgVMEM': 3176161, 'avgPSS': 2064088, 'rateRCHAR': 42882, 'avgSwap': 0, 'rateRBYTES': 42445, 'rateWBYTES': 3292}}
2019-06-09 13:50:28,719 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-09 13:50:28,719 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-09 13:50:28,719 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-09 13:50:28,719 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-09 13:50:28,720 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-09 13:50:28,720 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 17 s
2019-06-09 13:50:28,720 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-09 13:50:28,720 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 17 s
2019-06-09 13:50:28,720 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-09 13:50:28,720 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38781 s
2019-06-09 13:50:28,720 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-06-09 13:50:28,720 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-09 13:50:28,720 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-09 13:50:28,721 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/42/PanDA_Pilot-4375693224/pandatracerlog.txt (ignoring)
2019-06-09 13:50:28,721 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/42/PanDA_Pilot-4375693224/pilotlog.txt
2019-06-09 13:50:31,041 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-09 13:50:31,123 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-09 13:50:28,715 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.82 B/s (using 621 data points, chi2=24154372060.042492)
2019-06-09 13:50:28,716 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.82"
2019-06-09 13:50:28,716 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-09 13:50:28,717 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/42/PanDA_Pilot-4375693224/memory_monitor_summary.json
2019-06-09 13:50:28,719 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2117228, 'maxSwap': 4, 'totRCHAR': 1656607891, 'totRBYTES': 1639710720, 'totWCHAR': 116924267, 'totWBYTES': 127184896, 'maxVMEM': 3234100, 'maxPSS': 2108766}, 'Avg': {'avgRSS': 2072851, 'rateWCHAR': 3026, 'avgVMEM': 3176161, 'avgPSS': 2064088, 'rateRCHAR': 42882, 'avgSwap': 0, 'rateRBYTES': 42445, 'rateWBYTES': 3292}}
2019-06-09 13:50:28,719 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-09 13:50:28,719 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-09 13:50:28,719 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-09 13:50:28,719 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-09 13:50:28,720 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-09 13:50:28,720 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 17 s
2019-06-09 13:50:28,720 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-09 13:50:28,720 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 17 s
2019-06-09 13:50:28,720 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-09 13:50:28,720 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38781 s
2019-06-09 13:50:28,720 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-06-09 13:50:28,720 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-09 13:50:28,720 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-09 13:50:28,721 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/42/PanDA_Pilot-4375693224/pandatracerlog.txt (ignoring)
2019-06-09 13:50:28,721 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/42/PanDA_Pilot-4375693224/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-09 13:50:31,126 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/42/heartbeat.json
2019-06-09 13:50:31,127 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4375693224 was dequeued from the monitored payloads queue
2019-06-09 13:50:32,386 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-09 13:50:32,387 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-09 13:50:32,388 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-09 13:50:32,388 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4375693224
2019-06-09 13:50:32,388 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18251703
2019-06-09 13:50:32,388 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-09 13:50:32,388 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-09 13:50:32,389 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-09 13:50:32,389 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-09 13:50:32,389 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-09 13:50:32,389 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-09 13:50:32,389 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-09 13:50:32,389 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-09 13:50:32,389 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 38933 s
2019-06-09 13:50:32,390 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-06-09 13:50:32,390 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-09 13:50:32,390 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 31181
2019-06-09 13:50:32,390 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-09 13:50:32,390 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-09 13:50:32,391 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-09 13:50:32,391 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-09 13:50:32,391 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-09 13:50:32,391 | INFO | retrieve | pilot.control.job | has_job_completed | job 4375693224 has completed
2019-06-09 13:50:32,391 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-09 13:50:32,391 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-09 13:50:42,441 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-09 13:50:42,442 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/42
2019-06-09 13:50:42,495 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14330888192 B)
2019-06-09 13:50:42,496 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-09 13:50:42,505 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-09 13:50:42,515 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-09 13:50:42,515 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-09 13:50:42,522 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-09 13:50:42,558 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-09 13:50:42,662 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-09 13:50:42,856 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-09 13:50:42,881 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-09 13:50:43,020 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-09 13:50:43,518 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-09 13:50:43,521 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-09 13:50:44,342 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-09 13:50:44,343 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-09 13:50:45,534 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-09 13:50:50,569 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-06-09 13:50:50,569 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-09 13:50:50,570 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-09 13:50:50,570 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-09 13:50:50,571 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=38920.57s
KernelTime=1036.91s
UserTime=38783.98s
CPUUsage=102%
MaxResidentMemory=2010564kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9740
MinorPageFaults=18284543
Swaps=0
ForcedSwitches=556658
WaitSwitches=20829090
Inputs=3381064
Outputs=410728
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 437168
drwxrwx--x. 8 root root 4096 9. Jun 15:50 .
drwxr-x--x. 45 root root 4096 9. Jun 05:01 ..
-rw-------. 1 root root 494 9. Jun 15:50 086KDm4TLtunShfckohDCDFpABFKDmABFKDmR6zXDmABFKDmW83N8m.diag
-rw-------. 1 root root 7317447 9. Jun 05:02 agis_ddmendpoints.json
-rw-------. 1 root root 4955855 9. Jun 05:02 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 9. Jun 05:02 .alrb
drwxr-xr-x. 3 root root 4096 9. Jun 05:02 APPS
drwxr-xr-x. 2 root root 4096 9. Jun 05:02 .arc
-rw-------. 1 root root 550 9. Jun 05:02 .asetup
-rw-------. 1 root root 2986 9. Jun 05:03 .asetup.save
-rw-r--r--. 1 root root 0 9. Jun 05:01 boinc_lockfile
-rw-r--r--. 1 root root 8192 9. Jun 15:50 boinc_mmap_file
-rw-r--r--. 1 root root 537 9. Jun 15:50 boinc_task_state.xml
-rw-r--r--. 1 root root 377396909 9. Jun 05:02 EVNT.17323975._000306.pool.root.1
-rw-------. 1 root root 59750 9. Jun 15:50 heartbeat.json
-rw-r--r--. 1 root root 5470 9. Jun 05:01 init_data.xml
-rw-r--r--. 1 root root 248046 9. Jun 05:02 input.tar.gz
-rw-r--r--. 1 root root 112 9. Jun 05:01 job.xml
-rw-------. 1 root root 27283992 9. Jun 15:50 log.18251703._024568.job.log.1
-rw-------. 1 root root 2687704 9. Jun 15:50 log.18251703._024568.job.log.tgz.1
-rw-------. 1 root root 306 9. Jun 15:49 memory_monitor_summary.json
-rw-------. 1 root root 391 9. Jun 15:50 output.list
-rw-------. 1 4871 1028 2885 7. Jun 06:16 pandaJobData.out
drwxrwx---. 2 root root 4096 9. Jun 15:50 PanDA_Pilot-4375693224
drwxr-xr-x. 3 501 games 4096 29. Mai 14:16 pilot2
-rw-r--r--. 1 root root 238965 31. Mai 18:37 pilot2.tar.gz
-rw-------. 1 root root 27264814 9. Jun 15:50 pilotlog.txt
-rw-r--r--. 1 root root 4468 7. Jun 06:16 queuedata.json
-rw-r--r--. 1 root root 786 9. Jun 05:02 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 9. Jun 05:01 run_atlas
-rwx------. 1 4871 1028 15232 7. Jun 06:16 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 9. Jun 15:50 runtime_log
-rw-r--r--. 1 root root 7355 9. Jun 15:50 runtime_log.err
drwxrwx--x. 2 root root 4096 9. Jun 15:50 shared
-rw-r--r--. 1 root root 8714 9. Jun 05:02 start_atlas.sh
-rw-r--r--. 1 root root 16744 9. Jun 15:50 stderr.txt
-rw-r--r--. 1 root root 107 9. Jun 05:01 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 9. Jun 15:50 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
15:50:51 (24468): run_atlas exited; CPU time 38784.625840
15:50:51 (24468): called boinc_finish(0)
</stderr_txt>
]]>
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