| Name | QEOMDmiolsunShfckohDCDFpABFKDmABFKDm1VdWDmABFKDm61JCXo_1 |
| Workunit | 1902778 |
| Created | 8 Jun 2019, 18:58:51 UTC |
| Sent | 8 Jun 2019, 19:27:20 UTC |
| Report deadline | 15 Jun 2019, 19:27:20 UTC |
| Received | 9 Jun 2019, 6:02:04 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 34 min 44 sec |
| CPU time | 10 hours 55 min 25 sec |
| Validate state | Valid |
| Credit | 176.27 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.44 GB |
| Peak disk usage | 895.61 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
15:53:17 (610): wrapper (7.7.26015): starting
15:53:17 (610): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/43/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/43/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/43/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/43/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18251703._017095.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-10 00:44:00,154 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.43"
2019-06-10 00:44:00,155 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-10 00:44:00,156 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/43/PanDA_Pilot-4373109067/memory_monitor_summary.json
2019-06-10 00:44:00,157 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2114304, 'maxSwap': 0, 'totRCHAR': 1659849572, 'totRBYTES': 1645699072, 'totWCHAR': 120089355, 'totWBYTES': 130269184, 'maxVMEM': 3224396, 'maxPSS': 2105842}, 'Avg': {'avgRSS': 2074059, 'rateWCHAR': 3096, 'avgVMEM': 3170699, 'avgPSS': 2065290, 'rateRCHAR': 42805, 'avgSwap': 0, 'rateRBYTES': 42440, 'rateWBYTES': 3359}}
2019-06-10 00:44:00,157 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-10 00:44:00,157 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-10 00:44:00,158 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-10 00:44:00,158 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-10 00:44:00,158 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-10 00:44:00,158 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-10 00:44:00,158 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-10 00:44:00,158 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-10 00:44:00,159 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-10 00:44:00,159 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38911 s
2019-06-10 00:44:00,159 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 30 s
2019-06-10 00:44:00,159 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-10 00:44:00,159 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-10 00:44:00,159 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/43/PanDA_Pilot-4373109067/pandatracerlog.txt (ignoring)
2019-06-10 00:44:00,160 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/43/PanDA_Pilot-4373109067/pilotlog.txt
2019-06-10 00:44:02,486 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-10 00:44:02,560 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-10 00:44:00,154 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.43 B/s (using 624 data points, chi2=107681863611.762146)
2019-06-10 00:44:00,154 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.43"
2019-06-10 00:44:00,155 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-10 00:44:00,156 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/43/PanDA_Pilot-4373109067/memory_monitor_summary.json
2019-06-10 00:44:00,157 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2114304, 'maxSwap': 0, 'totRCHAR': 1659849572, 'totRBYTES': 1645699072, 'totWCHAR': 120089355, 'totWBYTES': 130269184, 'maxVMEM': 3224396, 'maxPSS': 2105842}, 'Avg': {'avgRSS': 2074059, 'rateWCHAR': 3096, 'avgVMEM': 3170699, 'avgPSS': 2065290, 'rateRCHAR': 42805, 'avgSwap': 0, 'rateRBYTES': 42440, 'rateWBYTES': 3359}}
2019-06-10 00:44:00,157 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-10 00:44:00,157 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-10 00:44:00,158 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-10 00:44:00,158 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-10 00:44:00,158 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-10 00:44:00,158 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-10 00:44:00,158 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-10 00:44:00,158 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-10 00:44:00,159 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-10 00:44:00,159 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38911 s
2019-06-10 00:44:00,159 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 30 s
2019-06-10 00:44:00,159 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-10 00:44:00,159 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-10 00:44:00,159 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/43/PanDA_Pilot-4373109067/pandatracerlog.txt (ignoring)
2019-06-10 00:44:00,160 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/43/PanDA_Pilot-4373109067/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-10 00:44:02,562 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/43/heartbeat.json
2019-06-10 00:44:02,562 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4373109067 was dequeued from the monitored payloads queue
2019-06-10 00:44:03,806 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-10 00:44:03,807 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-10 00:44:03,807 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-10 00:44:03,807 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4373109067
2019-06-10 00:44:03,807 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18251703
2019-06-10 00:44:03,807 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-10 00:44:03,807 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-10 00:44:03,807 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-10 00:44:03,808 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-10 00:44:03,808 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-10 00:44:03,808 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-10 00:44:03,808 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-10 00:44:03,808 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-10 00:44:03,808 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 39119 s
2019-06-10 00:44:03,808 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-06-10 00:44:03,808 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-10 00:44:03,808 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 7478
2019-06-10 00:44:03,809 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-10 00:44:03,809 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-10 00:44:03,809 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-10 00:44:03,809 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-10 00:44:03,809 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-10 00:44:03,809 | INFO | retrieve | pilot.control.job | has_job_completed | job 4373109067 has completed
2019-06-10 00:44:03,809 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-10 00:44:03,809 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-10 00:44:13,837 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-10 00:44:13,838 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/43
2019-06-10 00:44:13,876 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14284750848 B)
2019-06-10 00:44:13,876 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-10 00:44:13,898 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-10 00:44:13,923 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-10 00:44:14,159 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-10 00:44:14,200 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-10 00:44:14,362 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-10 00:44:14,417 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-10 00:44:14,817 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-10 00:44:14,817 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-10 00:44:14,892 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-10 00:44:15,589 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-10 00:44:15,590 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-10 00:44:15,867 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-10 00:44:15,869 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-10 00:44:17,106 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-10 00:44:24,142 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-06-10 00:44:24,143 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-10 00:44:24,145 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-10 00:44:24,145 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-10 00:44:24,145 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=39059.50s
KernelTime=1075.59s
UserTime=38951.66s
CPUUsage=102%
MaxResidentMemory=2004476kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9659
MinorPageFaults=18435140
Swaps=0
ForcedSwitches=563437
WaitSwitches=20773194
Inputs=3358160
Outputs=413968
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 438780
drwxrwx--x. 8 root root 4096 10. Jun 02:44 .
drwxr-x--x. 46 root root 4096 9. Jun 15:53 ..
-rw-------. 1 root root 7317447 9. Jun 15:54 agis_ddmendpoints.json
-rw-------. 1 root root 4955866 9. Jun 15:54 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 9. Jun 15:53 .alrb
drwxr-xr-x. 3 root root 4096 9. Jun 15:53 APPS
drwxr-xr-x. 2 root root 4096 9. Jun 15:54 .arc
-rw-------. 1 root root 550 9. Jun 15:53 .asetup
-rw-------. 1 root root 2986 9. Jun 15:54 .asetup.save
-rw-r--r--. 1 root root 0 9. Jun 15:53 boinc_lockfile
-rw-r--r--. 1 root root 8192 10. Jun 02:43 boinc_mmap_file
-rw-r--r--. 1 root root 537 10. Jun 02:42 boinc_task_state.xml
-rw-r--r--. 1 root root 379071276 9. Jun 15:53 EVNT.17323975._000340.pool.root.1
-rw-------. 1 root root 52632 10. Jun 02:44 heartbeat.json
-rw-r--r--. 1 root root 5470 9. Jun 15:53 init_data.xml
-rw-r--r--. 1 root root 248043 9. Jun 15:53 input.tar.gz
-rw-r--r--. 1 root root 112 9. Jun 15:53 job.xml
-rw-------. 1 root root 27289255 10. Jun 02:44 log.18251703._017095.job.log.1
-rw-------. 1 root root 2663674 10. Jun 02:43 log.18251703._017095.job.log.tgz.1
-rw-------. 1 root root 306 10. Jun 02:43 memory_monitor_summary.json
-rw-------. 1 root root 391 10. Jun 02:44 output.list
-rw-------. 1 4871 1028 2886 5. Jun 16:11 pandaJobData.out
drwxrwx---. 2 root root 4096 10. Jun 02:44 PanDA_Pilot-4373109067
drwxr-xr-x. 3 501 games 4096 29. Mai 14:16 pilot2
-rw-r--r--. 1 root root 238965 31. Mai 18:37 pilot2.tar.gz
-rw-------. 1 root root 27270077 10. Jun 02:44 pilotlog.txt
-rw-------. 1 root root 494 10. Jun 02:44 QEOMDmiolsunShfckohDCDFpABFKDmABFKDm1VdWDmABFKDm61JCXo.diag
-rw-r--r--. 1 root root 4468 5. Jun 16:10 queuedata.json
-rw-r--r--. 1 root root 786 9. Jun 15:53 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 9. Jun 15:53 run_atlas
-rwx------. 1 4871 1028 15232 5. Jun 16:11 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 10. Jun 02:44 runtime_log
-rw-r--r--. 1 root root 7355 10. Jun 02:44 runtime_log.err
drwxrwx--x. 2 root root 4096 10. Jun 02:44 shared
-rw-r--r--. 1 root root 8714 9. Jun 15:53 start_atlas.sh
-rw-r--r--. 1 root root 16740 10. Jun 02:44 stderr.txt
-rw-r--r--. 1 root root 107 9. Jun 15:53 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 10. Jun 02:43 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
02:44:25 (610): run_atlas exited; CPU time 38952.109379
02:44:25 (610): called boinc_finish(0)
</stderr_txt>
]]>
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