| Name | XqENDmR6UrunShfckohDCDFpABFKDmABFKDmWSZTDmABFKDmpp6D0m_3 |
| Workunit | 1901846 |
| Created | 9 Jun 2019, 5:25:22 UTC |
| Sent | 9 Jun 2019, 6:02:05 UTC |
| Report deadline | 16 Jun 2019, 6:02:05 UTC |
| Received | 9 Jun 2019, 16:34:15 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 32 min 10 sec |
| CPU time | 10 hours 53 min 26 sec |
| Validate state | Valid |
| Credit | 175.56 |
| Device peak FLOPS | 2.00 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.45 GB |
| Peak disk usage | 893.24 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
02:47:03 (9472): wrapper (7.7.26015): starting
02:47:03 (9472): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/44/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/44/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/44/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/44/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18099335._049260.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-10 11:34:59,078 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.23"
2019-06-10 11:34:59,078 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-10 11:34:59,081 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/44/PanDA_Pilot-4368082025/memory_monitor_summary.json
2019-06-10 11:34:59,084 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2116896, 'maxSwap': 4, 'totRCHAR': 1660992007, 'totRBYTES': 1636691968, 'totWCHAR': 118520870, 'totWBYTES': 128995328, 'maxVMEM': 3230208, 'maxPSS': 2108434}, 'Avg': {'avgRSS': 2081498, 'rateWCHAR': 3068, 'avgVMEM': 3184516, 'avgPSS': 2072739, 'rateRCHAR': 43009, 'avgSwap': 0, 'rateRBYTES': 42380, 'rateWBYTES': 3340}}
2019-06-10 11:34:59,084 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-10 11:34:59,084 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-10 11:34:59,084 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-10 11:34:59,084 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-10 11:34:59,085 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-10 11:34:59,085 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-10 11:34:59,085 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-10 11:34:59,085 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-10 11:34:59,085 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-10 11:34:59,085 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38759 s
2019-06-10 11:34:59,085 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-06-10 11:34:59,085 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-10 11:34:59,085 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-10 11:34:59,086 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/44/PanDA_Pilot-4368082025/pandatracerlog.txt (ignoring)
2019-06-10 11:34:59,086 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/44/PanDA_Pilot-4368082025/pilotlog.txt
2019-06-10 11:35:01,493 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-10 11:35:01,565 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-10 11:34:59,078 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.23 B/s (using 623 data points, chi2=159216928774.241852)
2019-06-10 11:34:59,078 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 leak=3.23"
2019-06-10 11:34:59,078 | INFO | queue_monitor | pilot.control.job | get_data_structure | payload/TRF did not report the number of read events
2019-06-10 11:34:59,081 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/44/PanDA_Pilot-4368082025/memory_monitor_summary.json
2019-06-10 11:34:59,084 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2116896, 'maxSwap': 4, 'totRCHAR': 1660992007, 'totRBYTES': 1636691968, 'totWCHAR': 118520870, 'totWBYTES': 128995328, 'maxVMEM': 3230208, 'maxPSS': 2108434}, 'Avg': {'avgRSS': 2081498, 'rateWCHAR': 3068, 'avgVMEM': 3184516, 'avgPSS': 2072739, 'rateRCHAR': 43009, 'avgSwap': 0, 'rateRBYTES': 42380, 'rateWBYTES': 3340}}
2019-06-10 11:34:59,084 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-10 11:34:59,084 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-10 11:34:59,084 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-10 11:34:59,084 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-10 11:34:59,085 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-10 11:34:59,085 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-10 11:34:59,085 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-10 11:34:59,085 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-10 11:34:59,085 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-10 11:34:59,085 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38759 s
2019-06-10 11:34:59,085 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 29 s
2019-06-10 11:34:59,085 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-10 11:34:59,085 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-10 11:34:59,086 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/44/PanDA_Pilot-4368082025/pandatracerlog.txt (ignoring)
2019-06-10 11:34:59,086 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/44/PanDA_Pilot-4368082025/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-10 11:35:01,567 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/44/heartbeat.json
2019-06-10 11:35:01,567 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4368082025 was dequeued from the monitored payloads queue
2019-06-10 11:35:02,903 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-10 11:35:02,904 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-10 11:35:02,904 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-10 11:35:02,904 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4368082025
2019-06-10 11:35:02,904 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18099335
2019-06-10 11:35:02,905 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-10 11:35:02,905 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-10 11:35:02,907 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-10 11:35:02,907 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-10 11:35:02,907 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-10 11:35:02,907 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-10 11:35:02,907 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-10 11:35:02,907 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-10 11:35:02,907 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 38949 s
2019-06-10 11:35:02,908 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 0
2019-06-10 11:35:02,908 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-10 11:35:02,908 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 15659
2019-06-10 11:35:02,908 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-10 11:35:02,908 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-10 11:35:02,908 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-10 11:35:02,908 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-10 11:35:02,908 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-10 11:35:02,909 | INFO | retrieve | pilot.control.job | has_job_completed | job 4368082025 has completed
2019-06-10 11:35:02,909 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-10 11:35:02,909 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-10 11:35:12,954 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-10 11:35:12,955 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/44
2019-06-10 11:35:12,974 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14291042304 B)
2019-06-10 11:35:12,975 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-10 11:35:13,040 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-10 11:35:13,148 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-10 11:35:13,237 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-10 11:35:13,411 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-10 11:35:13,555 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-10 11:35:13,803 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-10 11:35:13,887 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-10 11:35:13,887 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-10 11:35:14,152 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-10 11:35:14,587 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-10 11:35:14,588 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-10 11:35:14,906 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-10 11:35:14,908 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-10 11:35:17,174 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-10 11:35:42,390 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-06-10 11:35:42,392 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-10 11:35:42,395 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-10 11:35:42,396 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-10 11:35:42,396 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=38910.54s
KernelTime=1006.18s
UserTime=38850.25s
CPUUsage=102%
MaxResidentMemory=2006032kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9604
MinorPageFaults=17963303
Swaps=0
ForcedSwitches=501518
WaitSwitches=19912819
Inputs=3341024
Outputs=414760
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 436800
drwxrwx--x. 7 root root 4096 10. Jun 13:35 .
drwxr-x--x. 47 root root 4096 10. Jun 02:47 ..
-rw-------. 1 root root 7317447 10. Jun 02:47 agis_ddmendpoints.json
-rw-------. 1 root root 4955988 10. Jun 02:47 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 10. Jun 02:47 .alrb
drwxr-xr-x. 3 root root 4096 10. Jun 02:47 APPS
-rw-------. 1 root root 550 10. Jun 02:47 .asetup
-rw-------. 1 root root 2986 10. Jun 02:48 .asetup.save
-rw-r--r--. 1 root root 0 10. Jun 02:47 boinc_lockfile
-rw-r--r--. 1 root root 8192 10. Jun 13:35 boinc_mmap_file
-rw-r--r--. 1 root root 537 10. Jun 13:34 boinc_task_state.xml
-rw-r--r--. 1 root root 376473962 10. Jun 02:47 EVNT.17323946._000954.pool.root.1
-rw-------. 1 root root 54437 10. Jun 13:35 heartbeat.json
-rw-r--r--. 1 root root 5470 10. Jun 02:47 init_data.xml
-rw-r--r--. 1 root root 247980 10. Jun 02:47 input.tar.gz
-rw-r--r--. 1 root root 112 10. Jun 02:47 job.xml
-rw-------. 1 root root 27556273 10. Jun 13:35 log.18099335._049260.job.log.1
-rw-------. 1 root root 2698751 10. Jun 13:34 log.18099335._049260.job.log.tgz.1
-rw-------. 1 root root 306 10. Jun 13:34 memory_monitor_summary.json
-rw-------. 1 root root 391 10. Jun 13:35 output.list
-rw-------. 1 4871 1028 2886 2. Jun 04:08 pandaJobData.out
drwxrwx---. 2 root root 4096 10. Jun 13:35 PanDA_Pilot-4368082025
drwxr-xr-x. 3 501 games 4096 29. Mai 14:16 pilot2
-rw-r--r--. 1 root root 238965 31. Mai 18:37 pilot2.tar.gz
-rw-------. 1 root root 27541184 10. Jun 13:35 pilotlog.txt
-rw-r--r--. 1 root root 4444 2. Jun 04:08 queuedata.json
-rw-r--r--. 1 root root 786 10. Jun 02:47 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 10. Jun 02:47 run_atlas
-rwx------. 1 4871 1028 14753 2. Jun 04:08 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 10. Jun 13:35 runtime_log
-rw-r--r--. 1 root root 7355 10. Jun 13:35 runtime_log.err
drwxrwx--x. 2 root root 4096 10. Jun 13:35 shared
-rw-r--r--. 1 root root 8714 10. Jun 02:47 start_atlas.sh
-rw-r--r--. 1 root root 16743 10. Jun 13:35 stderr.txt
-rw-r--r--. 1 root root 107 10. Jun 02:47 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 10. Jun 13:35 wrapper_checkpoint.txt
-rw-------. 1 root root 494 10. Jun 13:35 XqENDmR6UrunShfckohDCDFpABFKDmABFKDmWSZTDmABFKDmpp6D0m.diag
running start_atlas return value is 0
Parent exit 0
child process exit 0
13:35:43 (9472): run_atlas exited; CPU time 38850.890766
13:35:43 (9472): called boinc_finish(0)
</stderr_txt>
]]>
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