| Name | SleNDmAQUyunShfckohDCDFpABFKDmABFKDmJl9VDmABFKDm0P4BMo_0 |
| Workunit | 1905956 |
| Created | 21 Jun 2019, 8:50:00 UTC |
| Sent | 21 Jun 2019, 12:34:57 UTC |
| Report deadline | 28 Jun 2019, 12:34:57 UTC |
| Received | 21 Jun 2019, 23:46:14 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 3717 |
| Run time | 11 hours 7 min 16 sec |
| CPU time | 21 hours 46 min 22 sec |
| Validate state | Valid |
| Credit | 816.58 |
| Device peak FLOPS | 8.81 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.89 GB |
| Peak swap size | 2.56 GB |
| Peak disk usage | 841.09 MB |
Stderr output
<core_client_version>7.12.0</core_client_version>
<![CDATA[
<stderr_txt>
14:36:22 (2819): wrapper (7.7.26015): starting
14:36:22 (2819): wrapper: running run_atlas (--nthreads 2)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '2']
THREADS=2
Checking for CVMFS
CVMFS is installed
OS:cat: /etc/redhat-release: No such file or directory
This is not SLC6, need to run with Singularity....
Checking Singularity...
Singularity is installed
copy /var/lib/boinc-client/slots/0/shared/start_atlas.sh
copy /var/lib/boinc-client/slots/0/shared/input.tar.gz
copy /var/lib/boinc-client/slots/0/shared/RTE.tar.gz
copy /var/lib/boinc-client/slots/0/shared/ATLAS.root_0
export ATHENA_PROC_NUMBER=2;start atlas job with
Testing the function of Singularity...
check singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img hostname
Singularity Works...
cmd = singularity exec --pwd /var/lib/boinc-client/slots/0 -B /cvmfs,/var /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18308685._027579.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-21 23:42:51,453 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-06-21 23:42:51,455 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-4390139081/memory_monitor_summary.json
2019-06-21 23:42:51,458 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 5963260, 'maxSwap': 0, 'totRCHAR': 4537586784, 'totRBYTES': 3092217856, 'totWCHAR': 121596181, 'totWBYTES': 126111744, 'maxVMEM': 8790964, 'maxPSS': 2397038}, 'Avg': {'avgRSS': 5825549, 'rateWCHAR': 3058, 'avgVMEM': 8619053, 'avgPSS': 2322951, 'rateRCHAR': 114127, 'avgSwap': 0, 'rateRBYTES': 77774, 'rateWBYTES': 3171}}
2019-06-21 23:42:51,458 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-21 23:42:51,458 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-21 23:42:51,459 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-21 23:42:51,459 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-21 23:42:51,459 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-21 23:42:51,459 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-21 23:42:51,460 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-21 23:42:51,460 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-21 23:42:51,460 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 7 s
2019-06-21 23:42:51,460 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 39809 s
2019-06-21 23:42:51,460 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 47 s
2019-06-21 23:42:51,461 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-21 23:42:51,461 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-21 23:42:51,461 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /var/lib/boinc-client/slots/0/PanDA_Pilot-4390139081/pandatracerlog.txt (ignoring)
2019-06-21 23:42:51,462 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /var/lib/boinc-client/slots/0/PanDA_Pilot-4390139081/pilotlog.txt
2019-06-21 23:42:51,631 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-21 23:42:51,633 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-21 23:42:51,452 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.42 B/s (using 645 data points, chi2=-219434378939.707550)
2019-06-21 23:42:51,452 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=2 nEvents=200 leak=3.42"
2019-06-21 23:42:51,453 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-06-21 23:42:51,455 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-4390139081/memory_monitor_summary.json
2019-06-21 23:42:51,458 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 5963260, 'maxSwap': 0, 'totRCHAR': 4537586784, 'totRBYTES': 3092217856, 'totWCHAR': 121596181, 'totWBYTES': 126111744, 'maxVMEM': 8790964, 'maxPSS': 2397038}, 'Avg': {'avgRSS': 5825549, 'rateWCHAR': 3058, 'avgVMEM': 8619053, 'avgPSS': 2322951, 'rateRCHAR': 114127, 'avgSwap': 0, 'rateRBYTES': 77774, 'rateWBYTES': 3171}}
2019-06-21 23:42:51,458 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-21 23:42:51,458 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-21 23:42:51,459 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-21 23:42:51,459 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-21 23:42:51,459 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-21 23:42:51,459 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-21 23:42:51,460 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-21 23:42:51,460 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-21 23:42:51,460 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 7 s
2019-06-21 23:42:51,460 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 39809 s
2019-06-21 23:42:51,460 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 47 s
2019-06-21 23:42:51,461 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-21 23:42:51,461 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-21 23:42:51,461 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /var/lib/boinc-client/slots/0/PanDA_Pilot-4390139081/pandatracerlog.txt (ignoring)
2019-06-21 23:42:51,462 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /var/lib/boinc-client/slots/0/PanDA_Pilot-4390139081/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-21 23:42:51,634 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /var/lib/boinc-client/slots/0/heartbeat.json
2019-06-21 23:42:51,635 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4390139081 was dequeued from the monitored payloads queue
2019-06-21 23:42:53,413 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-21 23:42:53,414 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-21 23:42:53,414 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-21 23:42:53,414 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4390139081
2019-06-21 23:42:53,414 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18308685
2019-06-21 23:42:53,414 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-21 23:42:53,415 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-21 23:42:53,415 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-21 23:42:53,415 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-21 23:42:53,415 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-21 23:42:53,415 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-21 23:42:53,416 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-21 23:42:53,416 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-21 23:42:53,416 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 78117 s
2019-06-21 23:42:53,417 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200
2019-06-21 23:42:53,417 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-21 23:42:53,417 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 9759
2019-06-21 23:42:53,417 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-21 23:42:53,418 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 2
2019-06-21 23:42:53,418 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-21 23:42:53,418 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-21 23:42:53,418 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-21 23:42:53,419 | INFO | retrieve | pilot.control.job | has_job_completed | job 4390139081 has completed
2019-06-21 23:42:53,419 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-21 23:42:53,419 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-21 23:43:01,381 | INFO | monitor | pilot.control.monitor | control | 39917 s have passed since pilot start
2019-06-21 23:43:03,459 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-21 23:43:03,460 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /var/lib/boinc-client/slots/0
2019-06-21 23:43:03,482 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (11664359424 B)
2019-06-21 23:43:03,482 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-21 23:43:03,616 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-21 23:43:03,860 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-21 23:43:03,867 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-21 23:43:04,019 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-21 23:43:04,060 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-21 23:43:04,060 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-21 23:43:04,345 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-21 23:43:04,396 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-21 23:43:04,434 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-21 23:43:04,988 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-21 23:43:04,989 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-21 23:43:05,062 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-21 23:43:05,062 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-21 23:43:06,871 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-21 23:43:36,034 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 63 s)
2019-06-21 23:43:36,034 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-21 23:43:36,034 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-21 23:43:36,035 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-21 23:43:36,035 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=39970.34s
KernelTime=1197.88s
UserTime=78203.44s
CPUUsage=198%
MaxResidentMemory=2031236kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=17115
MinorPageFaults=14751595
Swaps=0
ForcedSwitches=4528345
WaitSwitches=25875523
Inputs=6285330
Outputs=509512
SocketReceived=0
SocketSent=0
Signals=0
nodename=Crystal_Pellet@LinAH125
exitcode=0
******************************WorkDir***********************
total 384484
drwxrwx--x 8 boinc boinc 4096 jun 22 01:43 .
drwxrwx--x 3 boinc boinc 4096 jun 21 14:36 ..
-rw------- 1 boinc boinc 7326395 jun 21 14:37 agis_ddmendpoints.json
-rw------- 1 boinc boinc 4719148 jun 21 14:37 agis_schedconf.cvmfs.json
drwx------ 2 boinc boinc 4096 jun 21 14:37 .alrb
drwxr-xr-x 3 boinc boinc 4096 jun 21 14:37 APPS
drwxr-xr-x 2 boinc boinc 4096 jun 21 14:37 .arc
-rw------- 1 boinc boinc 549 jun 21 14:37 .asetup
-rw------- 1 boinc boinc 4198 jun 21 14:38 .asetup.save
-rw-r--r-- 1 boinc boinc 0 jun 21 14:36 boinc_lockfile
-rw-r--r-- 1 boinc boinc 8192 jun 22 01:43 boinc_mmap_file
-rw-r--r-- 1 boinc boinc 537 jun 22 01:36 boinc_task_state.xml
-rw-r--r-- 1 boinc boinc 376454164 jun 21 14:36 EVNT.17324015._000542.pool.root.1
-rw------- 1 boinc boinc 51092 jun 22 01:42 heartbeat.json
-rw-r--r-- 1 boinc boinc 5851 jun 21 14:36 init_data.xml
-rw-r--r-- 1 boinc boinc 300781 jun 21 14:36 input.tar.gz
-rw-r--r-- 1 boinc boinc 112 jun 21 14:36 job.xml
-rw------- 1 boinc boinc 1832923 jun 22 01:43 log.18308685._027579.job.log.1
-rw------- 1 boinc boinc 705510 jun 22 01:42 log.18308685._027579.job.log.tgz.1
-rw------- 1 boinc boinc 307 jun 22 01:41 memory_monitor_summary.json
-rw------- 1 boinc boinc 391 jun 22 01:43 output.list
-rw------- 1 boinc boinc 2884 jun 21 10:49 pandaJobData.out
drwxrwx--- 3 boinc boinc 4096 jun 22 01:42 PanDA_Pilot-4390139081
drwx------ 3 boinc boinc 4096 jun 19 10:35 pilot2
-rw-r--r-- 1 boinc boinc 291964 jun 20 14:23 pilot2.tar.gz
-rw------- 1 boinc boinc 1815112 jun 22 01:43 pilotlog.txt
-rw-r--r-- 1 boinc boinc 4468 jun 21 10:46 queuedata.json
-rw-r--r-- 1 boinc boinc 815 jun 21 14:36 RTE.tar.gz
-rwxr-xr-x 1 boinc boinc 8512 jun 21 14:36 run_atlas
-rwx------ 1 boinc boinc 15232 jun 21 10:49 runpilot2-wrapper.sh
-rw-r--r-- 1 boinc boinc 692 jun 22 01:43 runtime_log
-rw-r--r-- 1 boinc boinc 7142 jun 22 01:43 runtime_log.err
drwxrwx--x 2 boinc boinc 4096 jun 22 01:43 shared
-rw------- 1 boinc boinc 508 jun 22 01:43 SleNDmAQUyunShfckohDCDFpABFKDmABFKDmJl9VDmABFKDm0P4BMo.diag
-rw-r--r-- 1 boinc boinc 8743 jun 21 14:37 start_atlas.sh
-rw-r--r-- 1 boinc boinc 17152 jun 22 01:43 stderr.txt
-rw-r--r-- 1 boinc boinc 107 jun 21 14:36 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r-- 1 boinc boinc 28 jun 22 01:43 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
01:43:36 (2819): run_atlas exited; CPU time 78204.148415
01:43:36 (2819): called boinc_finish(0)
</stderr_txt>
]]>
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