| Name | gF8NDmZVqzunShfckohDCDFpABFKDmABFKDmUhLZDmABFKDmhmHjgn_3 |
| Workunit | 1906576 |
| Created | 25 Jun 2019, 16:16:35 UTC |
| Sent | 25 Jun 2019, 21:21:13 UTC |
| Report deadline | 2 Jul 2019, 21:21:13 UTC |
| Received | 26 Jun 2019, 7:42:08 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 20 min 55 sec |
| CPU time | 10 hours 41 min 0 sec |
| Validate state | Valid |
| Credit | 180.57 |
| Device peak FLOPS | 2.09 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.93 GB |
| Peak swap size | 2.57 GB |
| Peak disk usage | 845.63 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
23:40:32 (12923): wrapper (7.7.26015): starting
23:40:32 (12923): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/1/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/1/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/1/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/1/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18411005._003852.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-26 08:16:53,212 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=3.51"
2019-06-26 08:16:53,212 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-06-26 08:16:53,213 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/1/PanDA_Pilot-4393218535/memory_monitor_summary.json
2019-06-26 08:16:53,214 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2114648, 'maxSwap': 0, 'totRCHAR': 1557273079, 'totRBYTES': 1647742976, 'totWCHAR': 119878688, 'totWBYTES': 129916928, 'maxVMEM': 3458552, 'maxPSS': 2107195}, 'Avg': {'avgRSS': 2072174, 'rateWCHAR': 3156, 'avgVMEM': 3404533, 'avgPSS': 2064604, 'rateRCHAR': 41000, 'avgSwap': 0, 'rateRBYTES': 43382, 'rateWBYTES': 3420}}
2019-06-26 08:16:53,214 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-26 08:16:53,214 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-26 08:16:53,215 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-26 08:16:53,215 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-26 08:16:53,215 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-26 08:16:53,215 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-26 08:16:53,215 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-26 08:16:53,215 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-26 08:16:53,215 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-26 08:16:53,215 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38071 s
2019-06-26 08:16:53,215 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 28 s
2019-06-26 08:16:53,216 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-26 08:16:53,216 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-26 08:16:53,216 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/1/PanDA_Pilot-4393218535/pandatracerlog.txt (ignoring)
2019-06-26 08:16:53,218 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/1/PanDA_Pilot-4393218535/pilotlog.txt
2019-06-26 08:16:53,363 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-26 08:16:53,430 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-26 08:16:53,211 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.51 B/s (using 611 data points, chi2=2395571626006.445312)
2019-06-26 08:16:53,212 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=3.51"
2019-06-26 08:16:53,212 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-06-26 08:16:53,213 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/1/PanDA_Pilot-4393218535/memory_monitor_summary.json
2019-06-26 08:16:53,214 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2114648, 'maxSwap': 0, 'totRCHAR': 1557273079, 'totRBYTES': 1647742976, 'totWCHAR': 119878688, 'totWBYTES': 129916928, 'maxVMEM': 3458552, 'maxPSS': 2107195}, 'Avg': {'avgRSS': 2072174, 'rateWCHAR': 3156, 'avgVMEM': 3404533, 'avgPSS': 2064604, 'rateRCHAR': 41000, 'avgSwap': 0, 'rateRBYTES': 43382, 'rateWBYTES': 3420}}
2019-06-26 08:16:53,214 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-26 08:16:53,214 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-26 08:16:53,215 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-26 08:16:53,215 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-26 08:16:53,215 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-26 08:16:53,215 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-26 08:16:53,215 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-26 08:16:53,215 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-26 08:16:53,215 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-26 08:16:53,215 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38071 s
2019-06-26 08:16:53,215 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 28 s
2019-06-26 08:16:53,216 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-26 08:16:53,216 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-26 08:16:53,216 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/1/PanDA_Pilot-4393218535/pandatracerlog.txt (ignoring)
2019-06-26 08:16:53,218 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/1/PanDA_Pilot-4393218535/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-26 08:16:53,431 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/1/heartbeat.json
2019-06-26 08:16:53,432 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4393218535 was dequeued from the monitored payloads queue
2019-06-26 08:16:54,393 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-26 08:16:54,393 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-26 08:16:54,393 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-26 08:16:54,393 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4393218535
2019-06-26 08:16:54,393 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18411005
2019-06-26 08:16:54,394 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-26 08:16:54,394 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-26 08:16:54,394 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-26 08:16:54,394 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-26 08:16:54,394 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-26 08:16:54,394 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-26 08:16:54,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-26 08:16:54,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-26 08:16:54,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 38319 s
2019-06-26 08:16:54,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200
2019-06-26 08:16:54,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-26 08:16:54,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 19562
2019-06-26 08:16:54,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-26 08:16:54,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-26 08:16:54,395 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-26 08:16:54,396 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-26 08:16:54,396 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-26 08:16:54,396 | INFO | retrieve | pilot.control.job | has_job_completed | job 4393218535 has completed
2019-06-26 08:16:54,396 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-26 08:16:54,396 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-26 08:17:04,443 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-26 08:17:04,443 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/1
2019-06-26 08:17:04,505 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14157873152 B)
2019-06-26 08:17:04,506 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-26 08:17:04,528 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-26 08:17:04,529 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-26 08:17:04,656 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-26 08:17:04,691 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-26 08:17:04,776 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-26 08:17:04,782 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-26 08:17:05,066 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-26 08:17:05,170 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-26 08:17:05,279 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-26 08:17:05,595 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-26 08:17:05,597 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-26 08:17:06,422 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-26 08:17:06,425 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-26 08:17:08,082 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-26 08:17:36,088 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s)
2019-06-26 08:17:36,089 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-26 08:17:36,090 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-26 08:17:36,090 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-26 08:17:36,090 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=38219.42s
KernelTime=952.26s
UserTime=38179.91s
CPUUsage=102%
MaxResidentMemory=2025492kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9786
MinorPageFaults=16151048
Swaps=0
ForcedSwitches=448234
WaitSwitches=20198419
Inputs=3376096
Outputs=310720
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 385144
drwxrwx--x. 8 root root 4096 26. Jun 10:17 .
drwxr-x--x. 4 root root 4096 25. Jun 23:40 ..
-rw-------. 1 root root 7345165 25. Jun 23:41 agis_ddmendpoints.json
-rw-------. 1 root root 4729088 25. Jun 23:41 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 25. Jun 23:40 .alrb
drwxr-xr-x. 3 root root 4096 25. Jun 23:40 APPS
drwxr-xr-x. 2 root root 4096 25. Jun 23:41 .arc
-rw-------. 1 root root 549 25. Jun 23:40 .asetup
-rw-------. 1 root root 4198 25. Jun 23:41 .asetup.save
-rw-r--r--. 1 root root 0 25. Jun 23:40 boinc_lockfile
-rw-r--r--. 1 root root 8192 26. Jun 10:17 boinc_mmap_file
-rw-r--r--. 1 root root 537 26. Jun 10:15 boinc_task_state.xml
-rw-r--r--. 1 root root 377776499 25. Jun 23:40 EVNT.17324040._000077.pool.root.1
-rw-------. 1 root root 493 26. Jun 10:17 gF8NDmZVqzunShfckohDCDFpABFKDmABFKDmUhLZDmABFKDmhmHjgn.diag
-rw-------. 1 root root 52506 26. Jun 10:16 heartbeat.json
-rw-r--r--. 1 root root 5467 25. Jun 23:40 init_data.xml
-rw-r--r--. 1 root root 246322 25. Jun 23:40 input.tar.gz
-rw-r--r--. 1 root root 112 25. Jun 23:40 job.xml
-rw-------. 1 root root 1746531 26. Jun 10:17 log.18411005._003852.job.log.1
-rw-------. 1 root root 319135 26. Jun 10:16 log.18411005._003852.job.log.tgz.1
-rw-------. 1 root root 306 26. Jun 10:16 memory_monitor_summary.json
-rw-------. 1 root root 391 26. Jun 10:17 output.list
-rw-------. 1 4871 1028 2885 25. Jun 04:37 pandaJobData.out
drwxrwx---. 2 root root 4096 26. Jun 10:16 PanDA_Pilot-4393218535
drwxr-xr-x. 3 501 games 4096 31. Mai 14:36 pilot2
-rw-r--r--. 1 root root 237372 24. Jun 09:16 pilot2.tar.gz
-rw-------. 1 root root 1727307 26. Jun 10:17 pilotlog.txt
-rw-r--r--. 1 root root 4468 25. Jun 04:35 queuedata.json
-rw-r--r--. 1 root root 815 25. Jun 23:40 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 25. Jun 23:40 run_atlas
-rwx------. 1 4871 1028 15232 25. Jun 04:37 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 26. Jun 10:17 runtime_log
-rw-r--r--. 1 root root 7087 26. Jun 10:17 runtime_log.err
drwxrwx--x. 2 root root 4096 26. Jun 10:17 shared
-rw-r--r--. 1 root root 8714 25. Jun 23:40 start_atlas.sh
-rw-r--r--. 1 root root 16743 26. Jun 10:17 stderr.txt
-rw-r--r--. 1 root root 107 25. Jun 23:40 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 26. Jun 10:17 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
10:17:37 (12923): run_atlas exited; CPU time 38180.357703
10:17:37 (12923): called boinc_finish(0)
</stderr_txt>
]]>
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