| Name | aBXKDmJ97zunShfckohDCDFpABFKDmABFKDmfC0ZDmABFKDm0AALtn_1 |
| Workunit | 1906657 |
| Created | 26 Jun 2019, 0:49:28 UTC |
| Sent | 26 Jun 2019, 7:42:08 UTC |
| Report deadline | 3 Jul 2019, 7:42:08 UTC |
| Received | 26 Jun 2019, 17:22:58 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 9 hours 40 min 50 sec |
| CPU time | 9 hours 58 min 33 sec |
| Validate state | Valid |
| Credit | 168.92 |
| Device peak FLOPS | 2.09 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.57 GB |
| Peak disk usage | 833.48 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
10:20:00 (18782): wrapper (7.7.26015): starting
10:20:00 (18782): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/2/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/2/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/2/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/2/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18411039._005512.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-26 18:15:14,685 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=4.33"
2019-06-26 18:15:14,685 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-06-26 18:15:14,686 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/2/PanDA_Pilot-4394508810/memory_monitor_summary.json
2019-06-26 18:15:14,688 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2103660, 'maxSwap': 0, 'totRCHAR': 1603638067, 'totRBYTES': 1686851584, 'totWCHAR': 115663980, 'totWBYTES': 125128704, 'maxVMEM': 3463248, 'maxPSS': 2096215}, 'Avg': {'avgRSS': 2058737, 'rateWCHAR': 3254, 'avgVMEM': 3405294, 'avgPSS': 2051056, 'rateRCHAR': 45127, 'avgSwap': 0, 'rateRBYTES': 47468, 'rateWBYTES': 3521}}
2019-06-26 18:15:14,688 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-26 18:15:14,688 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-26 18:15:14,689 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-26 18:15:14,689 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-26 18:15:14,689 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-26 18:15:14,689 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-26 18:15:14,689 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-26 18:15:14,689 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-26 18:15:14,689 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-26 18:15:14,689 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 35598 s
2019-06-26 18:15:14,689 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 31 s
2019-06-26 18:15:14,690 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-26 18:15:14,690 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-26 18:15:14,690 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/2/PanDA_Pilot-4394508810/pandatracerlog.txt (ignoring)
2019-06-26 18:15:14,690 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/2/PanDA_Pilot-4394508810/pilotlog.txt
2019-06-26 18:15:14,819 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-26 18:15:14,890 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-26 18:15:14,685 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 4.33 B/s (using 570 data points, chi2=-222550980846.099121)
2019-06-26 18:15:14,685 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=4.33"
2019-06-26 18:15:14,685 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-06-26 18:15:14,686 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/2/PanDA_Pilot-4394508810/memory_monitor_summary.json
2019-06-26 18:15:14,688 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2103660, 'maxSwap': 0, 'totRCHAR': 1603638067, 'totRBYTES': 1686851584, 'totWCHAR': 115663980, 'totWBYTES': 125128704, 'maxVMEM': 3463248, 'maxPSS': 2096215}, 'Avg': {'avgRSS': 2058737, 'rateWCHAR': 3254, 'avgVMEM': 3405294, 'avgPSS': 2051056, 'rateRCHAR': 45127, 'avgSwap': 0, 'rateRBYTES': 47468, 'rateWBYTES': 3521}}
2019-06-26 18:15:14,688 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-26 18:15:14,688 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-26 18:15:14,689 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-26 18:15:14,689 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-26 18:15:14,689 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 8 s
2019-06-26 18:15:14,689 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-26 18:15:14,689 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-26 18:15:14,689 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-26 18:15:14,689 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-26 18:15:14,689 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 35598 s
2019-06-26 18:15:14,689 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 31 s
2019-06-26 18:15:14,690 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-26 18:15:14,690 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-26 18:15:14,690 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/2/PanDA_Pilot-4394508810/pandatracerlog.txt (ignoring)
2019-06-26 18:15:14,690 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/2/PanDA_Pilot-4394508810/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-26 18:15:14,893 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/2/heartbeat.json
2019-06-26 18:15:14,893 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4394508810 was dequeued from the monitored payloads queue
2019-06-26 18:15:15,896 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-26 18:15:15,897 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-26 18:15:15,897 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-26 18:15:15,897 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4394508810
2019-06-26 18:15:15,897 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18411039
2019-06-26 18:15:15,898 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-26 18:15:15,898 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-26 18:15:15,898 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-26 18:15:15,898 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-26 18:15:15,898 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-26 18:15:15,898 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-26 18:15:15,898 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-26 18:15:15,898 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-26 18:15:15,898 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 35788 s
2019-06-26 18:15:15,899 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200
2019-06-26 18:15:15,899 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-26 18:15:15,899 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 25427
2019-06-26 18:15:15,899 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-26 18:15:15,899 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-26 18:15:15,899 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-26 18:15:15,900 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-26 18:15:15,900 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-26 18:15:15,900 | INFO | retrieve | pilot.control.job | has_job_completed | job 4394508810 has completed
2019-06-26 18:15:15,901 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-26 18:15:15,901 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-26 18:15:25,952 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-26 18:15:25,952 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/2
2019-06-26 18:15:26,000 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14299430912 B)
2019-06-26 18:15:26,001 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-26 18:15:26,020 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-26 18:15:26,046 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-26 18:15:26,046 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-26 18:15:26,179 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-26 18:15:26,294 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-26 18:15:26,372 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-26 18:15:26,557 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-26 18:15:26,690 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-26 18:15:27,047 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-26 18:15:27,048 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-26 18:15:27,767 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-26 18:15:28,050 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-26 18:15:28,051 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-26 18:15:30,939 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-26 18:15:46,234 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-06-26 18:15:46,234 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-26 18:15:46,235 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-26 18:15:46,235 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-26 18:15:46,235 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=35741.75s
KernelTime=941.98s
UserTime=35624.41s
CPUUsage=102%
MaxResidentMemory=2021652kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9815
MinorPageFaults=15312750
Swaps=0
ForcedSwitches=449434
WaitSwitches=19353010
Inputs=3386240
Outputs=301392
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 381104
drwxrwx--x. 8 root root 4096 26. Jun 20:15 .
drwxr-x--x. 5 root root 4096 26. Jun 10:19 ..
-rw-------. 1 root root 493 26. Jun 20:15 aBXKDmJ97zunShfckohDCDFpABFKDmABFKDmfC0ZDmABFKDm0AALtn.diag
-rw-------. 1 root root 7345165 26. Jun 10:20 agis_ddmendpoints.json
-rw-------. 1 root root 4713087 26. Jun 10:20 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 26. Jun 10:20 .alrb
drwxr-xr-x. 3 root root 4096 26. Jun 10:20 APPS
drwxr-xr-x. 2 root root 4096 26. Jun 10:20 .arc
-rw-------. 1 root root 549 26. Jun 10:20 .asetup
-rw-------. 1 root root 4198 26. Jun 10:21 .asetup.save
-rw-r--r--. 1 root root 0 26. Jun 10:20 boinc_lockfile
-rw-r--r--. 1 root root 8192 26. Jun 20:15 boinc_mmap_file
-rw-r--r--. 1 root root 537 26. Jun 20:14 boinc_task_state.xml
-rw-r--r--. 1 root root 373846330 26. Jun 10:20 EVNT.17324043._000093.pool.root.1
-rw-------. 1 root root 60668 26. Jun 20:15 heartbeat.json
-rw-r--r--. 1 root root 5467 26. Jun 10:20 init_data.xml
-rw-r--r--. 1 root root 246314 26. Jun 10:20 input.tar.gz
-rw-r--r--. 1 root root 112 26. Jun 10:19 job.xml
-rw-------. 1 root root 1649243 26. Jun 20:15 log.18411039._005512.job.log.1
-rw-------. 1 root root 315351 26. Jun 20:14 log.18411039._005512.job.log.tgz.1
-rw-------. 1 root root 306 26. Jun 20:14 memory_monitor_summary.json
-rw-------. 1 root root 391 26. Jun 20:15 output.list
-rw-------. 1 4871 1028 2884 25. Jun 23:27 pandaJobData.out
drwxrwx---. 2 root root 4096 26. Jun 20:15 PanDA_Pilot-4394508810
drwxr-xr-x. 3 501 games 4096 31. Mai 14:36 pilot2
-rw-r--r--. 1 root root 237372 24. Jun 09:16 pilot2.tar.gz
-rw-------. 1 root root 1630019 26. Jun 20:15 pilotlog.txt
-rw-r--r--. 1 root root 4468 25. Jun 23:26 queuedata.json
-rw-r--r--. 1 root root 815 26. Jun 10:20 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 26. Jun 10:19 run_atlas
-rwx------. 1 4871 1028 15232 25. Jun 23:27 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 26. Jun 20:15 runtime_log
-rw-r--r--. 1 root root 7087 26. Jun 20:15 runtime_log.err
drwxrwx--x. 2 root root 4096 26. Jun 20:15 shared
-rw-r--r--. 1 root root 8714 26. Jun 10:20 start_atlas.sh
-rw-r--r--. 1 root root 16743 26. Jun 20:15 stderr.txt
-rw-r--r--. 1 root root 107 26. Jun 10:19 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 26. Jun 20:15 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
20:15:47 (18782): run_atlas exited; CPU time 35624.963182
20:15:47 (18782): called boinc_finish(0)
</stderr_txt>
]]>
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