| Name | k82NDm9ph0unShfckohDCDFpABFKDmABFKDmv4KbDmABFKDmIHXlpm_0 |
| Workunit | 1906962 |
| Created | 27 Jun 2019, 11:33:58 UTC |
| Sent | 28 Jun 2019, 5:59:53 UTC |
| Report deadline | 5 Jul 2019, 5:59:53 UTC |
| Received | 28 Jun 2019, 15:29:18 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 9 hours 29 min 25 sec |
| CPU time | 9 hours 48 min 40 sec |
| Validate state | Valid |
| Credit | 165.60 |
| Device peak FLOPS | 2.09 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.55 GB |
| Peak disk usage | 830.69 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
08:01:03 (7251): wrapper (7.7.26015): starting
08:01:03 (7251): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/0/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/0/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/0/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/0/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18410984._010354.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-28 15:44:34,723 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=3.08"
2019-06-28 15:44:34,724 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-06-28 15:44:34,726 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/0/PanDA_Pilot-4396054527/memory_monitor_summary.json
2019-06-28 15:44:34,731 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2102024, 'maxSwap': 0, 'totRCHAR': 1480356519, 'totRBYTES': 1646903296, 'totWCHAR': 109689052, 'totWBYTES': 119029760, 'maxVMEM': 3450836, 'maxPSS': 2094572}, 'Avg': {'avgRSS': 2066921, 'rateWCHAR': 3148, 'avgVMEM': 3403132, 'avgPSS': 2059301, 'rateRCHAR': 42495, 'avgSwap': 0, 'rateRBYTES': 47275, 'rateWBYTES': 3416}}
2019-06-28 15:44:34,731 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-28 15:44:34,731 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-28 15:44:34,733 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-28 15:44:34,734 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-28 15:44:34,734 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 6 s
2019-06-28 15:44:34,735 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-28 15:44:34,735 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-28 15:44:34,735 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-28 15:44:34,735 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 6 s
2019-06-28 15:44:34,735 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 34913 s
2019-06-28 15:44:34,735 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 33 s
2019-06-28 15:44:34,735 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-28 15:44:34,736 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-28 15:44:34,736 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/0/PanDA_Pilot-4396054527/pandatracerlog.txt (ignoring)
2019-06-28 15:44:34,737 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/0/PanDA_Pilot-4396054527/pilotlog.txt
2019-06-28 15:44:34,931 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-28 15:44:35,017 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-28 15:44:34,723 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.08 B/s (using 561 data points, chi2=-229225045080.553711)
2019-06-28 15:44:34,723 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=3.08"
2019-06-28 15:44:34,724 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-06-28 15:44:34,726 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/0/PanDA_Pilot-4396054527/memory_monitor_summary.json
2019-06-28 15:44:34,731 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2102024, 'maxSwap': 0, 'totRCHAR': 1480356519, 'totRBYTES': 1646903296, 'totWCHAR': 109689052, 'totWBYTES': 119029760, 'maxVMEM': 3450836, 'maxPSS': 2094572}, 'Avg': {'avgRSS': 2066921, 'rateWCHAR': 3148, 'avgVMEM': 3403132, 'avgPSS': 2059301, 'rateRCHAR': 42495, 'avgSwap': 0, 'rateRBYTES': 47275, 'rateWBYTES': 3416}}
2019-06-28 15:44:34,731 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-28 15:44:34,731 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-28 15:44:34,733 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-28 15:44:34,734 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-28 15:44:34,734 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 6 s
2019-06-28 15:44:34,735 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-06-28 15:44:34,735 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-28 15:44:34,735 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-06-28 15:44:34,735 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 6 s
2019-06-28 15:44:34,735 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 34913 s
2019-06-28 15:44:34,735 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 33 s
2019-06-28 15:44:34,735 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-28 15:44:34,736 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-28 15:44:34,736 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/0/PanDA_Pilot-4396054527/pandatracerlog.txt (ignoring)
2019-06-28 15:44:34,737 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/0/PanDA_Pilot-4396054527/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-28 15:44:35,020 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/0/heartbeat.json
2019-06-28 15:44:35,020 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4396054527 was dequeued from the monitored payloads queue
2019-06-28 15:44:36,072 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-28 15:44:36,074 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-28 15:44:36,075 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-28 15:44:36,075 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4396054527
2019-06-28 15:44:36,075 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18410984
2019-06-28 15:44:36,075 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-28 15:44:36,075 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-28 15:44:36,075 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-28 15:44:36,075 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-28 15:44:36,075 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-28 15:44:36,076 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-28 15:44:36,076 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-28 15:44:36,077 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-28 15:44:36,077 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 35175 s
2019-06-28 15:44:36,077 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200
2019-06-28 15:44:36,077 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-28 15:44:36,077 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 13644
2019-06-28 15:44:36,077 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-28 15:44:36,077 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-28 15:44:36,077 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-28 15:44:36,077 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-28 15:44:36,077 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-28 15:44:36,078 | INFO | retrieve | pilot.control.job | has_job_completed | job 4396054527 has completed
2019-06-28 15:44:36,078 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-28 15:44:36,078 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-28 15:44:46,127 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-28 15:44:46,127 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/0
2019-06-28 15:44:46,165 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14025752576 B)
2019-06-28 15:44:46,166 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-28 15:44:46,186 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-28 15:44:46,400 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-28 15:44:46,400 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-28 15:44:46,431 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-28 15:44:46,479 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-28 15:44:46,675 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-28 15:44:46,717 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-28 15:44:46,746 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-28 15:44:46,747 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-28 15:44:47,410 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-28 15:44:47,412 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-28 15:44:48,102 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-28 15:44:48,105 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-28 15:44:49,803 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-28 15:45:13,499 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-06-28 15:45:13,502 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-28 15:45:13,505 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-28 15:45:13,505 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-28 15:45:13,506 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=35047.10s
KernelTime=842.13s
UserTime=35079.89s
CPUUsage=102%
MaxResidentMemory=2001976kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=10006
MinorPageFaults=15153060
Swaps=0
ForcedSwitches=522012
WaitSwitches=19394255
Inputs=3410560
Outputs=288896
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 381924
drwxrwx--x. 8 root root 4096 28. Jun 17:45 .
drwxr-x--x. 4 root root 4096 28. Jun 08:01 ..
-rw-------. 1 root root 7342324 28. Jun 08:01 agis_ddmendpoints.json
-rw-------. 1 root root 4708756 28. Jun 08:01 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 28. Jun 08:01 .alrb
drwxr-xr-x. 3 root root 4096 28. Jun 08:01 APPS
drwxr-xr-x. 2 root root 4096 28. Jun 08:01 .arc
-rw-------. 1 root root 549 28. Jun 08:01 .asetup
-rw-------. 1 root root 4198 28. Jun 08:02 .asetup.save
-rw-r--r--. 1 root root 0 28. Jun 08:01 boinc_lockfile
-rw-r--r--. 1 root root 8192 28. Jun 17:44 boinc_mmap_file
-rw-r--r--. 1 root root 537 28. Jun 17:43 boinc_task_state.xml
-rw-r--r--. 1 root root 374733843 28. Jun 08:01 EVNT.17324038._000289.pool.root.1
-rw-------. 1 root root 63916 28. Jun 17:44 heartbeat.json
-rw-r--r--. 1 root root 5469 28. Jun 08:01 init_data.xml
-rw-r--r--. 1 root root 246326 28. Jun 08:01 input.tar.gz
-rw-r--r--. 1 root root 112 28. Jun 08:01 job.xml
-rw-------. 1 root root 494 28. Jun 17:45 k82NDm9ph0unShfckohDCDFpABFKDmABFKDmv4KbDmABFKDmIHXlpm.diag
-rw-------. 1 root root 1628872 28. Jun 17:45 log.18410984._010354.job.log.1
-rw-------. 1 root root 314464 28. Jun 17:44 log.18410984._010354.job.log.tgz.1
-rw-------. 1 root root 306 28. Jun 17:43 memory_monitor_summary.json
-rw-------. 1 root root 391 28. Jun 17:45 output.list
-rw-------. 1 4871 1028 2885 27. Jun 13:33 pandaJobData.out
drwxrwx---. 2 root root 4096 28. Jun 17:44 PanDA_Pilot-4396054527
drwxr-xr-x. 3 501 games 4096 31. Mai 14:36 pilot2
-rw-r--r--. 1 root root 237372 24. Jun 09:16 pilot2.tar.gz
-rw-------. 1 root root 1609648 28. Jun 17:45 pilotlog.txt
-rw-r--r--. 1 root root 4468 27. Jun 13:30 queuedata.json
-rw-r--r--. 1 root root 815 28. Jun 08:01 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 28. Jun 08:01 run_atlas
-rwx------. 1 4871 1028 15232 27. Jun 13:33 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 28. Jun 17:45 runtime_log
-rw-r--r--. 1 root root 7087 28. Jun 17:45 runtime_log.err
drwxrwx--x. 2 root root 4096 28. Jun 17:45 shared
-rw-r--r--. 1 root root 8714 28. Jun 08:01 start_atlas.sh
-rw-r--r--. 1 root root 16742 28. Jun 17:45 stderr.txt
-rw-r--r--. 1 root root 107 28. Jun 08:01 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 28. Jun 17:44 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
17:45:14 (7251): run_atlas exited; CPU time 35080.280986
17:45:14 (7251): called boinc_finish(0)
</stderr_txt>
]]>
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