| Name | WSwKDmNaYzunShfckohDCDFpABFKDmABFKDmCDfYDmABFKDmBbbbvn_1 |
| Workunit | 1906486 |
| Created | 27 Jun 2019, 20:42:48 UTC |
| Sent | 1 Jul 2019, 17:38:52 UTC |
| Report deadline | 8 Jul 2019, 17:38:52 UTC |
| Received | 2 Jul 2019, 4:08:16 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 18 min 9 sec |
| CPU time | 10 hours 30 min 54 sec |
| Validate state | Valid |
| Credit | 179.77 |
| Device peak FLOPS | 2.09 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.56 GB |
| Peak disk usage | 843.50 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
19:39:53 (22015): wrapper (7.7.26015): starting
19:39:53 (22015): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/3/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/3/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/3/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/3/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18308685._036803.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-07-02 04:06:21,098 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=3.29"
2019-07-02 04:06:21,099 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-07-02 04:06:21,103 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/3/PanDA_Pilot-4392510704/memory_monitor_summary.json
2019-07-02 04:06:21,106 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2105804, 'maxSwap': 0, 'totRCHAR': 1549482574, 'totRBYTES': 1646948352, 'totWCHAR': 119392565, 'totWBYTES': 129310720, 'maxVMEM': 3457752, 'maxPSS': 2098360}, 'Avg': {'avgRSS': 2064109, 'rateWCHAR': 3191, 'avgVMEM': 3405059, 'avgPSS': 2056551, 'rateRCHAR': 41414, 'avgSwap': 0, 'rateRBYTES': 44019, 'rateWBYTES': 3456}}
2019-07-02 04:06:21,106 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-07-02 04:06:21,106 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 7 s
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 7 s
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 37484 s
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 31 s
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-02 04:06:21,108 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-07-02 04:06:21,108 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/3/PanDA_Pilot-4392510704/pandatracerlog.txt (ignoring)
2019-07-02 04:06:21,109 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/3/PanDA_Pilot-4392510704/pilotlog.txt
2019-07-02 04:06:21,289 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-07-02 04:06:21,356 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-07-02 04:06:21,097 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.29 B/s (using 605 data points, chi2=-27873157284.373013)
2019-07-02 04:06:21,098 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=3.29"
2019-07-02 04:06:21,099 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-07-02 04:06:21,103 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/3/PanDA_Pilot-4392510704/memory_monitor_summary.json
2019-07-02 04:06:21,106 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2105804, 'maxSwap': 0, 'totRCHAR': 1549482574, 'totRBYTES': 1646948352, 'totWCHAR': 119392565, 'totWBYTES': 129310720, 'maxVMEM': 3457752, 'maxPSS': 2098360}, 'Avg': {'avgRSS': 2064109, 'rateWCHAR': 3191, 'avgVMEM': 3405059, 'avgPSS': 2056551, 'rateRCHAR': 41414, 'avgSwap': 0, 'rateRBYTES': 44019, 'rateWBYTES': 3456}}
2019-07-02 04:06:21,106 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-07-02 04:06:21,106 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 7 s
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 7 s
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 37484 s
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 31 s
2019-07-02 04:06:21,107 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-02 04:06:21,108 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-07-02 04:06:21,108 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/3/PanDA_Pilot-4392510704/pandatracerlog.txt (ignoring)
2019-07-02 04:06:21,109 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/3/PanDA_Pilot-4392510704/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-07-02 04:06:21,359 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/3/heartbeat.json
2019-07-02 04:06:21,359 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4392510704 was dequeued from the monitored payloads queue
2019-07-02 04:06:22,610 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-07-02 04:06:22,610 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-07-02 04:06:22,610 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-07-02 04:06:22,611 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4392510704
2019-07-02 04:06:22,611 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18308685
2019-07-02 04:06:22,611 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-07-02 04:06:22,611 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-07-02 04:06:22,611 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-07-02 04:06:22,611 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-07-02 04:06:22,611 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-07-02 04:06:22,612 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-07-02 04:06:22,612 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-07-02 04:06:22,612 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-07-02 04:06:22,612 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 37620 s
2019-07-02 04:06:22,612 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200
2019-07-02 04:06:22,612 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-07-02 04:06:22,612 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 28655
2019-07-02 04:06:22,612 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-07-02 04:06:22,612 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-07-02 04:06:22,612 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-07-02 04:06:22,613 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-07-02 04:06:22,613 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-07-02 04:06:22,613 | INFO | retrieve | pilot.control.job | has_job_completed | job 4392510704 has completed
2019-07-02 04:06:22,613 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-07-02 04:06:22,614 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-07-02 04:06:32,660 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-07-02 04:06:32,661 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/3
2019-07-02 04:06:32,700 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14030995456 B)
2019-07-02 04:06:32,700 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-07-02 04:06:32,793 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-07-02 04:06:33,062 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-07-02 04:06:33,095 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-07-02 04:06:33,172 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-07-02 04:06:33,375 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-07-02 04:06:33,378 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-07-02 04:06:33,428 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-07-02 04:06:33,428 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-07-02 04:06:33,527 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-07-02 04:06:34,520 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-07-02 04:06:34,521 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-07-02 04:06:34,557 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-07-02 04:06:34,557 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-07-02 04:06:36,550 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-07-02 04:07:00,839 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-07-02 04:07:00,840 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-07-02 04:07:00,841 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-07-02 04:07:00,842 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-07-02 04:07:00,842 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=37623.53s
KernelTime=860.21s
UserTime=37578.11s
CPUUsage=102%
MaxResidentMemory=2015980kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9774
MinorPageFaults=15807094
Swaps=0
ForcedSwitches=578089
WaitSwitches=21030249
Inputs=3372832
Outputs=309080
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 384444
drwxrwx--x. 8 root root 4096 2. Jul 06:07 .
drwxr-x--x. 6 root root 4096 1. Jul 19:39 ..
-rw-------. 1 root root 7353000 1. Jul 19:40 agis_ddmendpoints.json
-rw-------. 1 root root 4647351 1. Jul 19:40 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 1. Jul 19:39 .alrb
drwxr-xr-x. 3 root root 4096 1. Jul 19:39 APPS
drwxr-xr-x. 2 root root 4096 1. Jul 19:40 .arc
-rw-------. 1 root root 549 1. Jul 19:40 .asetup
-rw-------. 1 root root 4198 1. Jul 19:41 .asetup.save
-rw-r--r--. 1 root root 0 1. Jul 19:39 boinc_lockfile
-rw-r--r--. 1 root root 8192 2. Jul 06:06 boinc_mmap_file
-rw-r--r--. 1 root root 537 2. Jul 06:05 boinc_task_state.xml
-rw-r--r--. 1 root root 377199660 1. Jul 19:39 EVNT.17324015._000724.pool.root.1
-rw-------. 1 root root 43921 2. Jul 06:06 heartbeat.json
-rw-r--r--. 1 root root 5469 1. Jul 19:39 init_data.xml
-rw-r--r--. 1 root root 246310 1. Jul 19:39 input.tar.gz
-rw-r--r--. 1 root root 112 1. Jul 19:39 job.xml
-rw-------. 1 root root 1717055 2. Jul 06:07 log.18308685._036803.job.log.1
-rw-------. 1 root root 315640 2. Jul 06:06 log.18308685._036803.job.log.tgz.1
-rw-------. 1 root root 306 2. Jul 06:05 memory_monitor_summary.json
-rw-------. 1 root root 391 2. Jul 06:07 output.list
-rw-------. 1 4871 1028 2884 24. Jun 09:28 pandaJobData.out
drwxrwx---. 2 root root 4096 2. Jul 06:06 PanDA_Pilot-4392510704
drwxr-xr-x. 3 501 games 4096 31. Mai 14:36 pilot2
-rw-r--r--. 1 root root 237372 24. Jun 09:16 pilot2.tar.gz
-rw-------. 1 root root 1697831 2. Jul 06:07 pilotlog.txt
-rw-r--r--. 1 root root 4468 24. Jun 09:28 queuedata.json
-rw-r--r--. 1 root root 815 1. Jul 19:39 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 1. Jul 19:39 run_atlas
-rwx------. 1 4871 1028 15232 24. Jun 09:28 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 2. Jul 06:07 runtime_log
-rw-r--r--. 1 root root 7087 2. Jul 06:07 runtime_log.err
drwxrwx--x. 2 root root 4096 2. Jul 06:07 shared
-rw-r--r--. 1 root root 8714 1. Jul 19:39 start_atlas.sh
-rw-r--r--. 1 root root 16742 2. Jul 06:07 stderr.txt
-rw-r--r--. 1 root root 107 1. Jul 19:39 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 2. Jul 06:06 wrapper_checkpoint.txt
-rw-------. 1 root root 493 2. Jul 06:07 WSwKDmNaYzunShfckohDCDFpABFKDmABFKDmCDfYDmABFKDmBbbbvn.diag
running start_atlas return value is 0
Parent exit 0
child process exit 0
06:07:01 (22015): run_atlas exited; CPU time 37578.498199
06:07:01 (22015): called boinc_finish(0)
</stderr_txt>
]]>
©2024 CERN