| Name | h1JLDmgCz0unShfckohDCDFpABFKDmABFKDm6cOKDmABFKDm0WDbUm_1 |
| Workunit | 1907091 |
| Created | 28 Jun 2019, 8:53:37 UTC |
| Sent | 28 Jun 2019, 15:29:18 UTC |
| Report deadline | 5 Jul 2019, 15:29:18 UTC |
| Received | 29 Jun 2019, 2:28:47 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 59 min 29 sec |
| CPU time | 11 hours 17 min 56 sec |
| Validate state | Valid |
| Credit | 191.79 |
| Device peak FLOPS | 2.09 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.57 GB |
| Peak disk usage | 843.92 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
17:47:42 (10816): wrapper (7.7.26015): starting
17:47:42 (10816): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/1/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/1/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/1/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/1/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18308834._045315.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-29 03:03:17,734 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-06-29 03:03:17,737 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/1/PanDA_Pilot-4397089446/memory_monitor_summary.json
2019-06-29 03:03:17,740 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2108648, 'maxSwap': 0, 'totRCHAR': 1641604761, 'totRBYTES': 1680195584, 'totWCHAR': 121144801, 'totWBYTES': 131731456, 'maxVMEM': 3471180, 'maxPSS': 2101196}, 'Avg': {'avgRSS': 2053022, 'rateWCHAR': 3003, 'avgVMEM': 3385590, 'avgPSS': 2045355, 'rateRCHAR': 40698, 'avgSwap': 0, 'rateRBYTES': 41654, 'rateWBYTES': 3265}}
2019-06-29 03:03:17,741 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-29 03:03:17,741 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-29 03:03:17,743 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-29 03:03:17,743 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-29 03:03:17,743 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-06-29 03:03:17,744 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 17 s
2019-06-29 03:03:17,744 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-29 03:03:17,744 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 17 s
2019-06-29 03:03:17,744 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-29 03:03:17,745 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 40407 s
2019-06-29 03:03:17,745 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 32 s
2019-06-29 03:03:17,745 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-29 03:03:17,745 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-29 03:03:17,745 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/1/PanDA_Pilot-4397089446/pandatracerlog.txt (ignoring)
2019-06-29 03:03:17,746 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/1/PanDA_Pilot-4397089446/pilotlog.txt
2019-06-29 03:03:17,945 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-29 03:03:17,947 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-29 03:03:17,732 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 4.43 B/s (using 647 data points, chi2=-3363576748.944323)
2019-06-29 03:03:17,733 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=4.43"
2019-06-29 03:03:17,734 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-06-29 03:03:17,737 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/1/PanDA_Pilot-4397089446/memory_monitor_summary.json
2019-06-29 03:03:17,740 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2108648, 'maxSwap': 0, 'totRCHAR': 1641604761, 'totRBYTES': 1680195584, 'totWCHAR': 121144801, 'totWBYTES': 131731456, 'maxVMEM': 3471180, 'maxPSS': 2101196}, 'Avg': {'avgRSS': 2053022, 'rateWCHAR': 3003, 'avgVMEM': 3385590, 'avgPSS': 2045355, 'rateRCHAR': 40698, 'avgSwap': 0, 'rateRBYTES': 41654, 'rateWBYTES': 3265}}
2019-06-29 03:03:17,741 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-29 03:03:17,741 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-29 03:03:17,743 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-29 03:03:17,743 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-29 03:03:17,743 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-06-29 03:03:17,744 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 17 s
2019-06-29 03:03:17,744 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-29 03:03:17,744 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 17 s
2019-06-29 03:03:17,744 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-29 03:03:17,745 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 40407 s
2019-06-29 03:03:17,745 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 32 s
2019-06-29 03:03:17,745 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-29 03:03:17,745 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-29 03:03:17,745 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/1/PanDA_Pilot-4397089446/pandatracerlog.txt (ignoring)
2019-06-29 03:03:17,746 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/1/PanDA_Pilot-4397089446/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-29 03:03:17,948 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/1/heartbeat.json
2019-06-29 03:03:17,948 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4397089446 was dequeued from the monitored payloads queue
2019-06-29 03:03:19,119 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-29 03:03:19,119 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-29 03:03:19,119 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-29 03:03:19,120 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4397089446
2019-06-29 03:03:19,120 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18308834
2019-06-29 03:03:19,120 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-29 03:03:19,120 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-29 03:03:19,120 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-29 03:03:19,120 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-29 03:03:19,120 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-29 03:03:19,120 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-29 03:03:19,120 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-29 03:03:19,120 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-29 03:03:19,121 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 40533 s
2019-06-29 03:03:19,121 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200
2019-06-29 03:03:19,121 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-29 03:03:19,121 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 17456
2019-06-29 03:03:19,121 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-29 03:03:19,121 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-29 03:03:19,121 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-29 03:03:19,121 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-29 03:03:19,121 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-29 03:03:19,122 | INFO | retrieve | pilot.control.job | has_job_completed | job 4397089446 has completed
2019-06-29 03:03:19,122 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-29 03:03:19,122 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-29 03:03:24,889 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-06-29 03:03:29,157 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-29 03:03:29,157 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/1
2019-06-29 03:03:29,336 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14307819520 B)
2019-06-29 03:03:29,336 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-29 03:03:29,337 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-29 03:03:29,369 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-29 03:03:29,369 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-29 03:03:29,444 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-29 03:03:29,570 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-29 03:03:29,727 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-29 03:03:29,745 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-29 03:03:30,396 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-29 03:03:30,399 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-29 03:03:30,398 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-29 03:03:30,820 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-29 03:03:31,217 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-29 03:03:31,218 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-29 03:03:34,057 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-29 03:04:26,062 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 123 s)
2019-06-29 03:04:26,062 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-29 03:04:26,063 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-29 03:04:26,063 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-29 03:04:26,064 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=40597.70s
KernelTime=1131.66s
UserTime=40367.05s
CPUUsage=102%
MaxResidentMemory=2023676kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9812
MinorPageFaults=16857541
Swaps=0
ForcedSwitches=525387
WaitSwitches=21282772
Inputs=3375976
Outputs=314256
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 383732
drwxrwx--x. 8 root root 4096 29. Jun 05:04 .
drwxr-x--x. 5 root root 4096 28. Jun 17:47 ..
-rw-------. 1 root root 7342324 28. Jun 17:48 agis_ddmendpoints.json
-rw-------. 1 root root 4708901 28. Jun 17:48 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 28. Jun 17:47 .alrb
drwxr-xr-x. 3 root root 4096 28. Jun 17:47 APPS
drwxr-xr-x. 2 root root 4096 28. Jun 17:48 .arc
-rw-------. 1 root root 549 28. Jun 17:47 .asetup
-rw-------. 1 root root 4198 28. Jun 17:49 .asetup.save
-rw-r--r--. 1 root root 0 28. Jun 17:47 boinc_lockfile
-rw-r--r--. 1 root root 8192 29. Jun 05:04 boinc_mmap_file
-rw-r--r--. 1 root root 537 29. Jun 05:02 boinc_task_state.xml
-rw-r--r--. 1 root root 376157053 28. Jun 17:47 EVNT.17324023._000864.pool.root.1
-rw-------. 1 root root 494 29. Jun 05:04 h1JLDmgCz0unShfckohDCDFpABFKDmABFKDm6cOKDmABFKDm0WDbUm.diag
-rw-------. 1 root root 51577 29. Jun 05:03 heartbeat.json
-rw-r--r--. 1 root root 5467 28. Jun 17:47 init_data.xml
-rw-r--r--. 1 root root 246323 28. Jun 17:47 input.tar.gz
-rw-r--r--. 1 root root 112 28. Jun 17:47 job.xml
-rw-------. 1 root root 1841564 29. Jun 05:04 log.18308834._045315.job.log.1
-rw-------. 1 root root 327988 29. Jun 05:02 log.18308834._045315.job.log.tgz.1
-rw-------. 1 root root 306 29. Jun 05:02 memory_monitor_summary.json
-rw-------. 1 root root 391 29. Jun 05:04 output.list
-rw-------. 1 4871 1028 2884 28. Jun 08:06 pandaJobData.out
drwxrwx---. 2 root root 4096 29. Jun 05:03 PanDA_Pilot-4397089446
drwxr-xr-x. 3 501 games 4096 31. Mai 14:36 pilot2
-rw-r--r--. 1 root root 237372 24. Jun 09:16 pilot2.tar.gz
-rw-------. 1 root root 1822340 29. Jun 05:04 pilotlog.txt
-rw-r--r--. 1 root root 4468 28. Jun 08:05 queuedata.json
-rw-r--r--. 1 root root 815 28. Jun 17:47 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 28. Jun 17:47 run_atlas
-rwx------. 1 4871 1028 15232 28. Jun 08:06 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 29. Jun 05:04 runtime_log
-rw-r--r--. 1 root root 7087 29. Jun 05:04 runtime_log.err
drwxrwx--x. 2 root root 4096 29. Jun 05:04 shared
-rw-r--r--. 1 root root 8714 28. Jun 17:47 start_atlas.sh
-rw-r--r--. 1 root root 16754 29. Jun 05:04 stderr.txt
-rw-r--r--. 1 root root 107 28. Jun 17:47 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 29. Jun 05:04 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
05:04:27 (10816): run_atlas exited; CPU time 40367.460213
05:04:27 (10816): called boinc_finish(0)
</stderr_txt>
]]>
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