| Name | PArMDmY1NxunShfckohDCDFpABFKDmABFKDm6UTTDmABFKDmRH6Vrn_2 |
| Workunit | 1905422 |
| Created | 28 Jun 2019, 16:44:59 UTC |
| Sent | 29 Jun 2019, 2:28:47 UTC |
| Report deadline | 6 Jul 2019, 2:28:47 UTC |
| Received | 29 Jun 2019, 12:57:07 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 28 min 20 sec |
| CPU time | 10 hours 46 min 22 sec |
| Validate state | Valid |
| Credit | 182.73 |
| Device peak FLOPS | 2.09 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.92 GB |
| Peak swap size | 2.56 GB |
| Peak disk usage | 839.86 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
05:06:44 (18482): wrapper (7.7.26015): starting
05:06:44 (18482): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/2/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/2/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/2/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/2/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18308685._004209.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-29 13:51:05,538 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=5.01"
2019-06-29 13:51:05,539 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-06-29 13:51:05,540 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/2/PanDA_Pilot-4381244435/memory_monitor_summary.json
2019-06-29 13:51:05,541 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2113468, 'maxSwap': 0, 'totRCHAR': 1560993052, 'totRBYTES': 1652375552, 'totWCHAR': 117612565, 'totWBYTES': 127696896, 'maxVMEM': 3452212, 'maxPSS': 2106016}, 'Avg': {'avgRSS': 2058917, 'rateWCHAR': 3062, 'avgVMEM': 3392608, 'avgPSS': 2051097, 'rateRCHAR': 40644, 'avgSwap': 0, 'rateRBYTES': 43023, 'rateWBYTES': 3324}}
2019-06-29 13:51:05,541 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-29 13:51:05,541 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 17 s
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 17 s
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38527 s
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 31 s
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-29 13:51:05,543 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-29 13:51:05,543 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/2/PanDA_Pilot-4381244435/pandatracerlog.txt (ignoring)
2019-06-29 13:51:05,543 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/2/PanDA_Pilot-4381244435/pilotlog.txt
2019-06-29 13:51:05,745 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-29 13:51:05,822 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-29 13:51:05,538 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 5.01 B/s (using 616 data points, chi2=-71830452992.819748)
2019-06-29 13:51:05,538 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=5.01"
2019-06-29 13:51:05,539 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-06-29 13:51:05,540 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/2/PanDA_Pilot-4381244435/memory_monitor_summary.json
2019-06-29 13:51:05,541 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2113468, 'maxSwap': 0, 'totRCHAR': 1560993052, 'totRBYTES': 1652375552, 'totWCHAR': 117612565, 'totWBYTES': 127696896, 'maxVMEM': 3452212, 'maxPSS': 2106016}, 'Avg': {'avgRSS': 2058917, 'rateWCHAR': 3062, 'avgVMEM': 3392608, 'avgPSS': 2051097, 'rateRCHAR': 40644, 'avgSwap': 0, 'rateRBYTES': 43023, 'rateWBYTES': 3324}}
2019-06-29 13:51:05,541 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-29 13:51:05,541 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 17 s
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 17 s
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38527 s
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 31 s
2019-06-29 13:51:05,542 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-29 13:51:05,543 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-29 13:51:05,543 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/2/PanDA_Pilot-4381244435/pandatracerlog.txt (ignoring)
2019-06-29 13:51:05,543 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/2/PanDA_Pilot-4381244435/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-29 13:51:05,827 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/2/heartbeat.json
2019-06-29 13:51:05,827 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4381244435 was dequeued from the monitored payloads queue
2019-06-29 13:51:07,005 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-29 13:51:07,006 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-29 13:51:07,006 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-29 13:51:07,006 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4381244435
2019-06-29 13:51:07,006 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18308685
2019-06-29 13:51:07,006 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-29 13:51:07,006 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-29 13:51:07,006 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-29 13:51:07,006 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-29 13:51:07,007 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-29 13:51:07,007 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-29 13:51:07,007 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-29 13:51:07,007 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-29 13:51:07,007 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 38648 s
2019-06-29 13:51:07,007 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200
2019-06-29 13:51:07,007 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-29 13:51:07,007 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 25213
2019-06-29 13:51:07,008 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-29 13:51:07,008 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-29 13:51:07,008 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-29 13:51:07,008 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-29 13:51:07,008 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-29 13:51:07,008 | INFO | retrieve | pilot.control.job | has_job_completed | job 4381244435 has completed
2019-06-29 13:51:07,008 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-29 13:51:07,008 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-29 13:51:17,063 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-29 13:51:17,063 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/2
2019-06-29 13:51:17,141 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14162067456 B)
2019-06-29 13:51:17,142 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-29 13:51:17,149 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-29 13:51:17,154 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-29 13:51:17,164 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-29 13:51:17,164 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-29 13:51:17,268 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-29 13:51:17,275 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-29 13:51:17,645 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-29 13:51:17,772 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-29 13:51:18,064 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-29 13:51:18,224 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-29 13:51:18,226 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-29 13:51:19,077 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-29 13:51:19,078 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-29 13:51:20,389 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-29 13:51:35,257 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-06-29 13:51:35,257 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-29 13:51:35,259 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-29 13:51:35,259 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-29 13:51:35,259 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=38686.34s
KernelTime=1247.67s
UserTime=38484.62s
CPUUsage=102%
MaxResidentMemory=2021224kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9911
MinorPageFaults=16980888
Swaps=0
ForcedSwitches=587985
WaitSwitches=22681421
Inputs=3433536
Outputs=317352
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 383648
drwxrwx--x. 8 root root 4096 29. Jun 15:51 .
drwxr-x--x. 6 root root 4096 29. Jun 05:06 ..
-rw-------. 1 root root 7342324 29. Jun 05:07 agis_ddmendpoints.json
-rw-------. 1 root root 4708819 29. Jun 05:07 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 29. Jun 05:06 .alrb
drwxr-xr-x. 3 root root 4096 29. Jun 05:06 APPS
drwxr-xr-x. 2 root root 4096 29. Jun 05:07 .arc
-rw-------. 1 root root 549 29. Jun 05:06 .asetup
-rw-------. 1 root root 4198 29. Jun 05:08 .asetup.save
-rw-r--r--. 1 root root 0 29. Jun 05:06 boinc_lockfile
-rw-r--r--. 1 root root 8192 29. Jun 15:51 boinc_mmap_file
-rw-r--r--. 1 root root 537 29. Jun 15:50 boinc_task_state.xml
-rw-r--r--. 1 root root 376224811 29. Jun 05:06 EVNT.17324015._000092.pool.root.1
-rw-------. 1 root root 54660 29. Jun 15:51 heartbeat.json
-rw-r--r--. 1 root root 5469 29. Jun 05:06 init_data.xml
-rw-r--r--. 1 root root 250173 29. Jun 05:06 input.tar.gz
-rw-r--r--. 1 root root 112 29. Jun 05:06 job.xml
-rw-------. 1 root root 1761984 29. Jun 15:51 log.18308685._004209.job.log.1
-rw-------. 1 root root 321825 29. Jun 15:50 log.18308685._004209.job.log.tgz.1
-rw-------. 1 root root 306 29. Jun 15:50 memory_monitor_summary.json
-rw-------. 1 root root 391 29. Jun 15:51 output.list
-rw-------. 1 4871 1028 2882 18. Jun 09:47 pandaJobData.out
drwxrwx---. 2 root root 4096 29. Jun 15:51 PanDA_Pilot-4381244435
-rw-------. 1 root root 494 29. Jun 15:51 PArMDmY1NxunShfckohDCDFpABFKDmABFKDm6UTTDmABFKDmRH6Vrn.diag
drwxr-xr-x. 3 501 games 4096 11. Jun 00:38 pilot2
-rw-r--r--. 1 root root 241086 18. Jun 09:47 pilot2.tar.gz
-rw-------. 1 root root 1742769 29. Jun 15:51 pilotlog.txt
-rw-r--r--. 1 root root 4468 18. Jun 09:45 queuedata.json
-rw-r--r--. 1 root root 786 29. Jun 05:06 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 29. Jun 05:06 run_atlas
-rwx------. 1 4871 1028 15232 18. Jun 09:47 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 29. Jun 15:51 runtime_log
-rw-r--r--. 1 root root 7327 29. Jun 15:51 runtime_log.err
drwxrwx--x. 2 root root 4096 29. Jun 15:51 shared
-rw-r--r--. 1 root root 8714 29. Jun 05:06 start_atlas.sh
-rw-r--r--. 1 root root 16743 29. Jun 15:51 stderr.txt
-rw-r--r--. 1 root root 107 29. Jun 05:06 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 29. Jun 15:51 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
15:51:36 (18482): run_atlas exited; CPU time 38485.054382
15:51:36 (18482): called boinc_finish(0)
</stderr_txt>
]]>
©2024 CERN