| Name | XuFLDmo0GzunShfckohDCDFpABFKDmABFKDmDmzXDmABFKDm1XqBmm_3 |
| Workunit | 1906369 |
| Created | 28 Jun 2019, 21:36:16 UTC |
| Sent | 2 Jul 2019, 4:08:16 UTC |
| Report deadline | 9 Jul 2019, 4:08:16 UTC |
| Received | 2 Jul 2019, 14:36:00 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 21 min 45 sec |
| CPU time | 10 hours 27 min 8 sec |
| Validate state | Valid |
| Credit | 180.82 |
| Device peak FLOPS | 2.09 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.55 GB |
| Peak disk usage | 843.12 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
06:09:32 (27580): wrapper (7.7.26015): starting
06:09:32 (27580): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/4/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/4/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/4/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/4/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18410984._000558.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-07-02 14:33:37,058 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-07-02 14:33:37,059 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/4/PanDA_Pilot-4391931491/memory_monitor_summary.json
2019-07-02 14:33:37,060 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2108388, 'maxSwap': 0, 'totRCHAR': 1543527387, 'totRBYTES': 1651404800, 'totWCHAR': 118214502, 'totWBYTES': 128102400, 'maxVMEM': 3450624, 'maxPSS': 2100944}, 'Avg': {'avgRSS': 2072630, 'rateWCHAR': 3175, 'avgVMEM': 3405191, 'avgPSS': 2065024, 'rateRCHAR': 41462, 'avgSwap': 0, 'rateRBYTES': 44360, 'rateWBYTES': 3441}}
2019-07-02 14:33:37,060 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-07-02 14:33:37,061 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-07-02 14:33:37,063 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-02 14:33:37,063 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-07-02 14:33:37,063 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 7 s
2019-07-02 14:33:37,063 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-07-02 14:33:37,063 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-07-02 14:33:37,063 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-07-02 14:33:37,064 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 7 s
2019-07-02 14:33:37,065 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 37314 s
2019-07-02 14:33:37,065 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 32 s
2019-07-02 14:33:37,065 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-02 14:33:37,065 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-07-02 14:33:37,066 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/4/PanDA_Pilot-4391931491/pandatracerlog.txt (ignoring)
2019-07-02 14:33:37,066 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/4/PanDA_Pilot-4391931491/pilotlog.txt
2019-07-02 14:33:37,254 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-07-02 14:33:37,319 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-07-02 14:33:37,057 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.09 B/s (using 601 data points, chi2=-329641169921.401550)
2019-07-02 14:33:37,058 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=3.09"
2019-07-02 14:33:37,058 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-07-02 14:33:37,059 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/4/PanDA_Pilot-4391931491/memory_monitor_summary.json
2019-07-02 14:33:37,060 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2108388, 'maxSwap': 0, 'totRCHAR': 1543527387, 'totRBYTES': 1651404800, 'totWCHAR': 118214502, 'totWBYTES': 128102400, 'maxVMEM': 3450624, 'maxPSS': 2100944}, 'Avg': {'avgRSS': 2072630, 'rateWCHAR': 3175, 'avgVMEM': 3405191, 'avgPSS': 2065024, 'rateRCHAR': 41462, 'avgSwap': 0, 'rateRBYTES': 44360, 'rateWBYTES': 3441}}
2019-07-02 14:33:37,060 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-07-02 14:33:37,061 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-07-02 14:33:37,063 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-02 14:33:37,063 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-07-02 14:33:37,063 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 7 s
2019-07-02 14:33:37,063 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-07-02 14:33:37,063 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-07-02 14:33:37,063 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-07-02 14:33:37,064 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 7 s
2019-07-02 14:33:37,065 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 37314 s
2019-07-02 14:33:37,065 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 32 s
2019-07-02 14:33:37,065 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-02 14:33:37,065 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-07-02 14:33:37,066 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/4/PanDA_Pilot-4391931491/pandatracerlog.txt (ignoring)
2019-07-02 14:33:37,066 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/4/PanDA_Pilot-4391931491/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-07-02 14:33:37,324 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/4/heartbeat.json
2019-07-02 14:33:37,326 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4391931491 was dequeued from the monitored payloads queue
2019-07-02 14:33:38,445 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-07-02 14:33:38,446 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-07-02 14:33:38,447 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-07-02 14:33:38,447 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4391931491
2019-07-02 14:33:38,447 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18410984
2019-07-02 14:33:38,447 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-07-02 14:33:38,448 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-07-02 14:33:38,448 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-07-02 14:33:38,448 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-07-02 14:33:38,448 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-07-02 14:33:38,449 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-07-02 14:33:38,449 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-07-02 14:33:38,449 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-07-02 14:33:38,449 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 37415 s
2019-07-02 14:33:38,449 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200
2019-07-02 14:33:38,450 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-07-02 14:33:38,450 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 1896
2019-07-02 14:33:38,450 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-07-02 14:33:38,450 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-07-02 14:33:38,450 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-07-02 14:33:38,450 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-07-02 14:33:38,450 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-07-02 14:33:38,451 | INFO | retrieve | pilot.control.job | has_job_completed | job 4391931491 has completed
2019-07-02 14:33:38,451 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-07-02 14:33:38,452 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-07-02 14:33:42,296 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s)
2019-07-02 14:33:48,499 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-07-02 14:33:48,499 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/4
2019-07-02 14:33:48,683 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14179893248 B)
2019-07-02 14:33:48,683 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-07-02 14:33:48,906 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-07-02 14:33:48,918 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-07-02 14:33:49,069 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-07-02 14:33:49,108 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-07-02 14:33:49,129 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-07-02 14:33:49,158 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-07-02 14:33:49,158 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-07-02 14:33:49,352 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-07-02 14:33:49,792 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-07-02 14:33:50,162 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-07-02 14:33:50,165 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-07-02 14:33:50,511 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-07-02 14:33:50,512 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-07-02 14:33:52,031 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-07-02 14:34:43,412 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 123 s)
2019-07-02 14:34:43,412 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-07-02 14:34:43,413 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-07-02 14:34:43,413 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-07-02 14:34:43,414 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=37495.98s
KernelTime=944.17s
UserTime=37354.67s
CPUUsage=102%
MaxResidentMemory=2009212kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9807
MinorPageFaults=15890970
Swaps=0
ForcedSwitches=542183
WaitSwitches=20836985
Inputs=3417184
Outputs=306800
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 383676
drwxrwx--x. 8 root root 4096 2. Jul 16:34 .
drwxr-x--x. 7 root root 4096 2. Jul 06:09 ..
-rw-------. 1 root root 7353000 2. Jul 06:10 agis_ddmendpoints.json
-rw-------. 1 root root 4646364 2. Jul 06:10 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 2. Jul 06:09 .alrb
drwxr-xr-x. 3 root root 4096 2. Jul 06:09 APPS
drwxr-xr-x. 2 root root 4096 2. Jul 06:10 .arc
-rw-------. 1 root root 549 2. Jul 06:09 .asetup
-rw-------. 1 root root 4198 2. Jul 06:11 .asetup.save
-rw-r--r--. 1 root root 0 2. Jul 06:09 boinc_lockfile
-rw-r--r--. 1 root root 8192 2. Jul 16:34 boinc_mmap_file
-rw-r--r--. 1 root root 537 2. Jul 16:32 boinc_task_state.xml
-rw-r--r--. 1 root root 376313612 2. Jul 06:09 EVNT.17324038._000112.pool.root.1
-rw-------. 1 root root 45212 2. Jul 16:33 heartbeat.json
-rw-r--r--. 1 root root 5469 2. Jul 06:09 init_data.xml
-rw-r--r--. 1 root root 300772 2. Jul 06:09 input.tar.gz
-rw-r--r--. 1 root root 112 2. Jul 06:09 job.xml
-rw-------. 1 root root 1710558 2. Jul 16:34 log.18410984._000558.job.log.1
-rw-------. 1 root root 315535 2. Jul 16:33 log.18410984._000558.job.log.tgz.1
-rw-------. 1 root root 306 2. Jul 16:32 memory_monitor_summary.json
-rw-------. 1 root root 391 2. Jul 16:34 output.list
-rw-------. 1 4871 1028 2883 23. Jun 14:42 pandaJobData.out
drwxrwx---. 2 root root 4096 2. Jul 16:33 PanDA_Pilot-4391931491
drwxr-xr-x. 3 501 games 4096 19. Jun 10:35 pilot2
-rw-r--r--. 1 root root 291964 20. Jun 14:23 pilot2.tar.gz
-rw-------. 1 root root 1691341 2. Jul 16:34 pilotlog.txt
-rw-r--r--. 1 root root 4468 23. Jun 14:42 queuedata.json
-rw-r--r--. 1 root root 815 2. Jul 06:09 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 2. Jul 06:09 run_atlas
-rwx------. 1 4871 1028 15232 23. Jun 14:42 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 2. Jul 16:34 runtime_log
-rw-r--r--. 1 root root 7087 2. Jul 16:34 runtime_log.err
drwxrwx--x. 2 root root 4096 2. Jul 16:34 shared
-rw-r--r--. 1 root root 8714 2. Jul 06:09 start_atlas.sh
-rw-r--r--. 1 root root 16754 2. Jul 16:34 stderr.txt
-rw-r--r--. 1 root root 107 2. Jul 06:09 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 2. Jul 16:34 wrapper_checkpoint.txt
-rw-------. 1 root root 493 2. Jul 16:34 XuFLDmo0GzunShfckohDCDFpABFKDmABFKDmDmzXDmABFKDm1XqBmm.diag
running start_atlas return value is 0
Parent exit 0
child process exit 0
16:34:44 (27580): run_atlas exited; CPU time 37355.386118
16:34:44 (27580): called boinc_finish(0)
</stderr_txt>
]]>
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