| Name | 4xpMDm9SI1unShfckohDCDFpABFKDmABFKDmxh7KDmABFKDml2F0Wn_1 |
| Workunit | 1907211 |
| Created | 29 Jun 2019, 12:26:41 UTC |
| Sent | 29 Jun 2019, 12:57:07 UTC |
| Report deadline | 6 Jul 2019, 12:57:07 UTC |
| Received | 29 Jun 2019, 22:37:18 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 9 hours 40 min 11 sec |
| CPU time | 9 hours 48 min 58 sec |
| Validate state | Valid |
| Credit | 168.73 |
| Device peak FLOPS | 2.09 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.56 GB |
| Peak disk usage | 834.03 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
15:54:32 (24463): wrapper (7.7.26015): starting
15:54:32 (24463): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/4/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/4/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/4/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/4/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18411039._014002.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-29 23:48:05,338 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=8.57"
2019-06-29 23:48:05,338 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-06-29 23:48:05,339 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/4/PanDA_Pilot-4398480884/memory_monitor_summary.json
2019-06-29 23:48:05,340 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2105760, 'maxSwap': 0, 'totRCHAR': 1477587599, 'totRBYTES': 1647284224, 'totWCHAR': 109074179, 'totWBYTES': 118480896, 'maxVMEM': 3462436, 'maxPSS': 2098288}, 'Avg': {'avgRSS': 2037651, 'rateWCHAR': 3087, 'avgVMEM': 3379404, 'avgPSS': 2029673, 'rateRCHAR': 41830, 'avgSwap': 0, 'rateRBYTES': 46634, 'rateWBYTES': 3354}}
2019-06-29 23:48:05,340 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 17 s
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 17 s
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 35470 s
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 31 s
2019-06-29 23:48:05,342 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-29 23:48:05,342 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-29 23:48:05,342 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/4/PanDA_Pilot-4398480884/pandatracerlog.txt (ignoring)
2019-06-29 23:48:05,342 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/4/PanDA_Pilot-4398480884/pilotlog.txt
2019-06-29 23:48:05,505 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-06-29 23:48:05,577 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-29 23:48:05,337 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 8.57 B/s (using 566 data points, chi2=-1346516093.557707)
2019-06-29 23:48:05,338 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=8.57"
2019-06-29 23:48:05,338 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-06-29 23:48:05,339 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/4/PanDA_Pilot-4398480884/memory_monitor_summary.json
2019-06-29 23:48:05,340 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2105760, 'maxSwap': 0, 'totRCHAR': 1477587599, 'totRBYTES': 1647284224, 'totWCHAR': 109074179, 'totWBYTES': 118480896, 'maxVMEM': 3462436, 'maxPSS': 2098288}, 'Avg': {'avgRSS': 2037651, 'rateWCHAR': 3087, 'avgVMEM': 3379404, 'avgPSS': 2029673, 'rateRCHAR': 41830, 'avgSwap': 0, 'rateRBYTES': 46634, 'rateWBYTES': 3354}}
2019-06-29 23:48:05,340 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 17 s
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 17 s
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 35470 s
2019-06-29 23:48:05,341 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 31 s
2019-06-29 23:48:05,342 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-06-29 23:48:05,342 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-06-29 23:48:05,342 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/4/PanDA_Pilot-4398480884/pandatracerlog.txt (ignoring)
2019-06-29 23:48:05,342 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/4/PanDA_Pilot-4398480884/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-06-29 23:48:05,578 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/4/heartbeat.json
2019-06-29 23:48:05,579 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4398480884 was dequeued from the monitored payloads queue
2019-06-29 23:48:06,775 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-29 23:48:06,776 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-06-29 23:48:06,776 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-29 23:48:06,777 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4398480884
2019-06-29 23:48:06,777 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18411039
2019-06-29 23:48:06,777 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-06-29 23:48:06,777 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-06-29 23:48:06,777 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-06-29 23:48:06,777 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-06-29 23:48:06,777 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-06-29 23:48:06,777 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-06-29 23:48:06,777 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-06-29 23:48:06,777 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-06-29 23:48:06,778 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 35202 s
2019-06-29 23:48:06,778 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200
2019-06-29 23:48:06,778 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-06-29 23:48:06,778 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 31103
2019-06-29 23:48:06,778 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-06-29 23:48:06,778 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-06-29 23:48:06,778 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-06-29 23:48:06,778 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-06-29 23:48:06,778 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-06-29 23:48:06,778 | INFO | retrieve | pilot.control.job | has_job_completed | job 4398480884 has completed
2019-06-29 23:48:06,779 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-06-29 23:48:06,779 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-06-29 23:48:16,805 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-06-29 23:48:16,807 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/4
2019-06-29 23:48:16,876 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14113832960 B)
2019-06-29 23:48:16,876 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-29 23:48:16,885 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-06-29 23:48:16,886 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-06-29 23:48:16,894 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-06-29 23:48:16,985 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-06-29 23:48:17,215 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-06-29 23:48:17,333 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-06-29 23:48:17,401 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-06-29 23:48:17,406 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-06-29 23:48:17,954 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-06-29 23:48:17,955 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-06-29 23:48:18,326 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-29 23:48:18,882 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-29 23:48:18,882 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-06-29 23:48:21,493 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-06-29 23:49:01,793 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-06-29 23:49:01,794 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-06-29 23:49:01,795 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-06-29 23:49:01,796 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-06-29 23:49:01,796 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=35660.18s
KernelTime=1072.41s
UserTime=35044.24s
CPUUsage=101%
MaxResidentMemory=2017752kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9797
MinorPageFaults=15353898
Swaps=0
ForcedSwitches=455768
WaitSwitches=19575280
Inputs=3376984
Outputs=290784
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 384188
drwxrwx--x. 8 root root 4096 30. Jun 01:49 .
drwxr-x--x. 7 root root 4096 29. Jun 15:54 ..
-rw-------. 1 root root 494 30. Jun 01:49 4xpMDm9SI1unShfckohDCDFpABFKDmABFKDmxh7KDmABFKDml2F0Wn.diag
-rw-------. 1 root root 7342324 29. Jun 15:55 agis_ddmendpoints.json
-rw-------. 1 root root 4708823 29. Jun 15:55 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 29. Jun 15:54 .alrb
drwxr-xr-x. 3 root root 4096 29. Jun 15:54 APPS
drwxr-xr-x. 2 root root 4096 29. Jun 15:55 .arc
-rw-------. 1 root root 549 29. Jun 15:54 .asetup
-rw-------. 1 root root 4198 29. Jun 15:56 .asetup.save
-rw-r--r--. 1 root root 0 29. Jun 15:54 boinc_lockfile
-rw-r--r--. 1 root root 8192 30. Jun 01:48 boinc_mmap_file
-rw-r--r--. 1 root root 537 30. Jun 01:47 boinc_task_state.xml
-rw-r--r--. 1 root root 377054719 29. Jun 15:54 EVNT.17324043._000200.pool.root.1
-rw-------. 1 root root 50739 30. Jun 01:48 heartbeat.json
-rw-r--r--. 1 root root 5469 29. Jun 15:54 init_data.xml
-rw-r--r--. 1 root root 246332 29. Jun 15:54 input.tar.gz
-rw-r--r--. 1 root root 112 29. Jun 15:54 job.xml
-rw-------. 1 root root 1632925 30. Jun 01:49 log.18411039._014002.job.log.1
-rw-------. 1 root root 311690 30. Jun 01:47 log.18411039._014002.job.log.tgz.1
-rw-------. 1 root root 306 30. Jun 01:47 memory_monitor_summary.json
-rw-------. 1 root root 391 30. Jun 01:49 output.list
-rw-------. 1 4871 1028 2887 29. Jun 04:40 pandaJobData.out
drwxrwx---. 2 root root 4096 30. Jun 01:48 PanDA_Pilot-4398480884
drwxr-xr-x. 3 501 games 4096 31. Mai 14:36 pilot2
-rw-r--r--. 1 root root 237372 24. Jun 09:16 pilot2.tar.gz
-rw-------. 1 root root 1613701 30. Jun 01:49 pilotlog.txt
-rw-r--r--. 1 root root 4468 29. Jun 04:40 queuedata.json
-rw-r--r--. 1 root root 815 29. Jun 15:54 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 29. Jun 15:54 run_atlas
-rwx------. 1 4871 1028 15232 29. Jun 04:40 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 30. Jun 01:49 runtime_log
-rw-r--r--. 1 root root 7087 30. Jun 01:49 runtime_log.err
drwxrwx--x. 2 root root 4096 30. Jun 01:49 shared
-rw-r--r--. 1 root root 8714 29. Jun 15:54 start_atlas.sh
-rw-r--r--. 1 root root 16742 30. Jun 01:49 stderr.txt
-rw-r--r--. 1 root root 107 29. Jun 15:54 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 30. Jun 01:48 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
01:49:03 (24463): run_atlas exited; CPU time 35044.783383
01:49:03 (24463): called boinc_finish(0)
</stderr_txt>
]]>
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