Name OftKDmPkX1unShfckohDCDFpABFKDmABFKDm96gLDmABFKDmndoJem_0
Workunit 1907316
Created 29 Jun 2019, 18:59:31 UTC
Sent 29 Jun 2019, 22:37:18 UTC
Report deadline 6 Jul 2019, 22:37:18 UTC
Received 30 Jun 2019, 8:58:36 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 2244
Run time 10 hours 21 min 18 sec
CPU time 10 hours 34 min 8 sec
Validate state Valid
Credit 180.69
Device peak FLOPS 2.09 GFLOPS
Application version ATLAS Simulation v0.62 (native_mt)
x86_64-pc-linux-gnu
Peak working set size 1.92 GB
Peak swap size 2.55 GB
Peak disk usage 843.86 MB

Stderr output

<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
01:52:08 (28254): wrapper (7.7.26015): starting
01:52:08 (28254): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)

This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/5/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/5/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/5/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/5/shared/RTE.tar.gz
start atlas job with 
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18308834._050944.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-06-30 10:28:19,331 | INFO     | queue_monitor       | pilot.control.job                | get_data_structure        | total number of processed events: 200 (read)
2019-06-30 10:28:19,334 | INFO     | queue_monitor       | pilot.user.atlas.utilities       | get_memory_values         | using path: /root/Downloads/BOINC/slots/5/PanDA_Pilot-4399508229/memory_monitor_summary.json
2019-06-30 10:28:19,336 | DEBUG    | queue_monitor       | pilot.user.atlas.utilities       | get_memory_monitor_info   | summary_dictionary={'Max': {'maxRSS': 2109748, 'maxSwap': 4, 'totRCHAR': 1549014879, 'totRBYTES': 1680977920, 'totWCHAR': 119816028, 'totWBYTES': 129781760, 'maxVMEM': 3445004, 'maxPSS': 2102206}, 'Avg': {'avgRSS': 2045264, 'rateWCHAR': 3160, 'avgVMEM': 3375286, 'avgPSS': 2037319, 'rateRCHAR': 40856, 'avgSwap': 0, 'rateRBYTES': 44336, 'rateWBYTES': 3423}}
2019-06-30 10:28:19,336 | INFO     | queue_monitor       | pilot.user.atlas.utilities       | get_memory_monitor_info   | extracted standard info from memory monitor json
2019-06-30 10:28:19,336 | INFO     | queue_monitor       | pilot.user.atlas.utilities       | get_memory_monitor_info   | extracted standard memory fields from memory monitor json
2019-06-30 10:28:19,337 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | ..............................
2019-06-30 10:28:19,337 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | . Timing measurements:
2019-06-30 10:28:19,337 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | . get job = 9 s
2019-06-30 10:28:19,337 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | . initial setup = 17 s
2019-06-30 10:28:19,337 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | . payload setup = 0 s
2019-06-30 10:28:19,337 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | . total setup = 17 s
2019-06-30 10:28:19,337 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | . stage-in = 8 s
2019-06-30 10:28:19,338 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | . payload execution = 38041 s
2019-06-30 10:28:19,339 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | . stage-out = 24 s
2019-06-30 10:28:19,339 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | ..............................
2019-06-30 10:28:19,339 | INFO     | queue_monitor       | pilot.util.auxiliary             | get_log_extracts          | building log extracts (sent to the server as 'pilotLog')
2019-06-30 10:28:19,339 | DEBUG    | queue_monitor       | pilot.util.auxiliary             | get_panda_tracer_log      | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/5/PanDA_Pilot-4399508229/pandatracerlog.txt (ignoring)
2019-06-30 10:28:19,339 | INFO     | queue_monitor       | pilot.util.container             | execute                   | executing command: tail -n 20 /root/Downloads/BOINC/slots/5/PanDA_Pilot-4399508229/pilotlog.txt
2019-06-30 10:28:19,473 | DEBUG    | queue_monitor       | pilot.util.auxiliary             | get_pilot_log_extracts    | dumping warning messages from pilotlog.txt:

2019-06-30 10:28:19,537 | WARNING  | queue_monitor       | pilot.util.auxiliary             | get_log_extracts          | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-06-30 10:28:19,331 | INFO     | queue_monitor       | pilot.api.analytics              | get_fitted_data           | current memory leak: 6.46 B/s (using 609 data points, chi2=23246006018.794960)
2019-06-30 10:28:19,331 | DEBUG    | queue_monitor       | pilot.util.auxiliary             | get_job_metrics           | job metrics="coreCount=1 nEvents=200 leak=6.46"
2019-06-30 10:28:19,331 | INFO     | queue_monitor       | pilot.control.job                | get_data_structure        | total number of processed events: 200 (read)
2019-06-30 10:28:19,334 | INFO     | queue_monitor       | pilot.user.atlas.utilities       | get_memory_values         | using path: /root/Downloads/BOINC/slots/5/PanDA_Pilot-4399508229/memory_monitor_summary.json
2019-06-30 10:28:19,336 | DEBUG    | queue_monitor       | pilot.user.atlas.utilities       | get_memory_monitor_info   | summary_dictionary={'Max': {'maxRSS': 2109748, 'maxSwap': 4, 'totRCHAR': 1549014879, 'totRBYTES': 1680977920, 'totWCHAR': 119816028, 'totWBYTES': 129781760, 'maxVMEM': 3445004, 'maxPSS': 2102206}, 'Avg': {'avgRSS': 2045264, 'rateWCHAR': 3160, 'avgVMEM': 3375286, 'avgPSS': 2037319, 'rateRCHAR': 40856, 'avgSwap': 0, 'rateRBYTES': 44336, 'rateWBYTES': 3423}}
2019-06-30 10:28:19,336 | INFO     | queue_monitor       | pilot.user.atlas.utilities       | get_memory_monitor_info   | extracted standard info from memory monitor json
2019-06-30 10:28:19,336 | INFO     | queue_monitor       | pilot.user.atlas.utilities       | get_memory_monitor_info   | extracted standard memory fields from memory monitor json
2019-06-30 10:28:19,337 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | ..............................
2019-06-30 10:28:19,337 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | . Timing measurements:
2019-06-30 10:28:19,337 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | . get job = 9 s
2019-06-30 10:28:19,337 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | . initial setup = 17 s
2019-06-30 10:28:19,337 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | . payload setup = 0 s
2019-06-30 10:28:19,337 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | . total setup = 17 s
2019-06-30 10:28:19,337 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | . stage-in = 8 s
2019-06-30 10:28:19,338 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | . payload execution = 38041 s
2019-06-30 10:28:19,339 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | . stage-out = 24 s
2019-06-30 10:28:19,339 | INFO     | queue_monitor       | pilot.util.auxiliary             | timing_report             | ..............................
2019-06-30 10:28:19,339 | INFO     | queue_monitor       | pilot.util.auxiliary             | get_log_extracts          | building log extracts (sent to the server as 'pilotLog')
2019-06-30 10:28:19,339 | DEBUG    | queue_monitor       | pilot.util.auxiliary             | get_panda_tracer_log      | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/5/PanDA_Pilot-4399508229/pandatracerlog.txt (ignoring)
2019-06-30 10:28:19,339 | INFO     | queue_monitor       | pilot.util.container             | execute                   | executing command: tail -n 20 /root/Downloads/BOINC/slots/5/PanDA_Pilot-4399508229/pilotlog.txt
- Error messages from pilotlog.txt -
          "CRITICAL": 0, 

          "ERROR": 0, 

          "FATAL": 0, 


2019-06-30 10:28:19,539 | DEBUG    | queue_monitor       | pilot.control.job                | send_state                | wrote heartbeat to file /root/Downloads/BOINC/slots/5/heartbeat.json
2019-06-30 10:28:19,540 | INFO     | queue_monitor       | pilot.control.job                | queue_monitor             | job 4399508229 was dequeued from the monitored payloads queue
2019-06-30 10:28:20,374 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | 
2019-06-30 10:28:20,374 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | job summary report
2019-06-30 10:28:20,374 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | --------------------------------------------------
2019-06-30 10:28:20,375 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | PanDA job id: 4399508229
2019-06-30 10:28:20,375 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | task id: 18308834
2019-06-30 10:28:20,375 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | errors: (none)
2019-06-30 10:28:20,375 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | status: LOG_TRANSFER = DONE 
2019-06-30 10:28:20,375 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | pilot state: finished 
2019-06-30 10:28:20,376 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | transexitcode: 0
2019-06-30 10:28:20,376 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | exeerrorcode: 0
2019-06-30 10:28:20,376 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | exeerrordiag: 
2019-06-30 10:28:20,376 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | exitcode: 0
2019-06-30 10:28:20,376 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | exitmsg: OK
2019-06-30 10:28:20,376 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | cpuconsumptiontime: 37888 s
2019-06-30 10:28:20,376 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | nevents: 200
2019-06-30 10:28:20,376 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | neventsw: 0
2019-06-30 10:28:20,376 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | pid: 2618
2019-06-30 10:28:20,377 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | pgrp: None
2019-06-30 10:28:20,377 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | corecount: 1
2019-06-30 10:28:20,377 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | event service: False
2019-06-30 10:28:20,377 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | --------------------------------------------------
2019-06-30 10:28:20,377 | INFO     | retrieve            | pilot.util.auxiliary             | make_job_report           | 
2019-06-30 10:28:20,377 | INFO     | retrieve            | pilot.control.job                | has_job_completed         | job 4399508229 has completed
2019-06-30 10:28:20,377 | INFO     | retrieve            | pilot.control.job                | retrieve                  | ready for new job
2019-06-30 10:28:20,377 | DEBUG    | retrieve            | pilot.control.job                | retrieve                  | getjob_requests=1
2019-06-30 10:28:28,432 | WARNING  | job_monitor         | pilot.control.job                | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s)
2019-06-30 10:28:30,424 | DEBUG    | retrieve            | pilot.control.job                | proceed_with_getjob       | proceed_with_getjob called with getjob_requests=1
2019-06-30 10:28:30,424 | DEBUG    | retrieve            | pilot.util.monitoring            | check_local_space         | checking local space on /root/Downloads/BOINC/slots/5
2019-06-30 10:28:30,566 | INFO     | retrieve            | pilot.util.monitoring            | check_local_space         | sufficient remaining disk space (14131658752 B)
2019-06-30 10:28:30,566 | WARNING  | retrieve            | pilot.control.job                | proceed_with_getjob       | since timefloor is set to 0, pilot was only allowed to run one job
2019-06-30 10:28:30,614 | INFO     | monitor             | pilot.control.monitor            | control                   | monitor control has ended
2019-06-30 10:28:30,617 | WARNING  | copytool_out        | pilot.util.common                | should_abort              | data:copytool_out:received graceful stop - abort after this iteration
2019-06-30 10:28:30,618 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | will abort 
2019-06-30 10:28:30,665 | INFO     | validate_post       | pilot.control.payload            | validate_post             | validate_post has finished
2019-06-30 10:28:30,666 | DEBUG    | data                | pilot.control.data               | control                   | data control ending since graceful_stop has been set
2019-06-30 10:28:31,071 | DEBUG    | job                 | pilot.control.job                | control                   | job control ending since graceful_stop has been set
2019-06-30 10:28:31,178 | DEBUG    | payload             | pilot.control.payload            | control                   | payload control ending since graceful_stop has been set
2019-06-30 10:28:31,420 | DEBUG    | copytool_in         | pilot.control.data               | copytool_in               | copytool_in ended since graceful_stop has been set
2019-06-30 10:28:31,628 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | aborting
2019-06-30 10:28:31,629 | DEBUG    | copytool_out        | pilot.control.data               | copytool_out              | copytool_out has finished
2019-06-30 10:28:31,785 | WARNING  | queue_monitoring    | pilot.util.common                | should_abort              | data:queue_monitoring:received graceful stop - abort after this iteration
2019-06-30 10:28:32,402 | WARNING  | queue_monitor       | pilot.util.common                | should_abort              | job:queue_monitor:received graceful stop - abort after this iteration
2019-06-30 10:28:32,403 | INFO     | queue_monitor       | pilot.control.job                | queue_monitor             | [job] queue monitor has finished
2019-06-30 10:28:34,809 | INFO     | queue_monitoring    | pilot.control.data               | queue_monitoring          | [data] queue monitor has finished
2019-06-30 10:29:29,495 | WARNING  | job_monitor         | pilot.control.job                | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 123 s)
2019-06-30 10:29:29,495 | INFO     | job_monitor         | pilot.control.job                | job_monitor               | job monitor has finished
2019-06-30 10:29:29,496 | INFO     | MainThread          | pilot.workflow.generic           | run                       | end of generic workflow (traces error code: 0)
2019-06-30 10:29:29,497 | INFO     | MainThread          | root                             | wrap_up                   | traces error code: 0
2019-06-30 10:29:29,497 | INFO     | MainThread          | root                             | wrap_up                   | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=38234.66s
KernelTime=1097.39s
UserTime=37705.49s
CPUUsage=101%
MaxResidentMemory=2010624kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9812
MinorPageFaults=16105707
Swaps=0
ForcedSwitches=517560
WaitSwitches=20608311
Inputs=3377824
Outputs=309128
SocketReceived=0
SocketSent=0
Signals=0

nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 384928
drwxrwx--x. 8 root root       4096 30. Jun 12:29 .
drwxr-x--x. 8 root root       4096 30. Jun 01:52 ..
-rw-------. 1 root root    7342324 30. Jun 01:53 agis_ddmendpoints.json
-rw-------. 1 root root    4708881 30. Jun 01:53 agis_schedconf.cvmfs.json
drwx------. 2 root root       4096 30. Jun 01:52 .alrb
drwxr-xr-x. 3 root root       4096 30. Jun 01:52 APPS
drwxr-xr-x. 2 root root       4096 30. Jun 01:52 .arc
-rw-------. 1 root root        549 30. Jun 01:52 .asetup
-rw-------. 1 root root       4198 30. Jun 01:54 .asetup.save
-rw-r--r--. 1 root root          0 30. Jun 01:52 boinc_lockfile
-rw-r--r--. 1 root root       8192 30. Jun 12:29 boinc_mmap_file
-rw-r--r--. 1 root root        537 30. Jun 12:27 boinc_task_state.xml
-rw-r--r--. 1 root root  377562745 30. Jun 01:52 EVNT.17324023._000974.pool.root.1
-rw-------. 1 root root      59728 30. Jun 12:28 heartbeat.json
-rw-r--r--. 1 root root       5469 30. Jun 01:52 init_data.xml
-rw-r--r--. 1 root root     246329 30. Jun 01:52 input.tar.gz
-rw-r--r--. 1 root root        112 30. Jun 01:52 job.xml
-rw-------. 1 root root    1748070 30. Jun 12:29 log.18308834._050944.job.log.1
-rw-------. 1 root root     321491 30. Jun 12:28 log.18308834._050944.job.log.tgz.1
-rw-------. 1 root root        306 30. Jun 12:27 memory_monitor_summary.json
-rw-------. 1 root root        494 30. Jun 12:29 OftKDmPkX1unShfckohDCDFpABFKDmABFKDm96gLDmABFKDmndoJem.diag
-rw-------. 1 root root        391 30. Jun 12:29 output.list
-rw-------. 1 4871  1028      2886 29. Jun 20:59 pandaJobData.out
drwxrwx---. 2 root root       4096 30. Jun 12:28 PanDA_Pilot-4399508229
drwxr-xr-x. 3  501 games      4096 31. Mai 14:36 pilot2
-rw-r--r--. 1 root root     237372 24. Jun 09:16 pilot2.tar.gz
-rw-------. 1 root root    1728846 30. Jun 12:29 pilotlog.txt
-rw-r--r--. 1 root root       4468 29. Jun 20:56 queuedata.json
-rw-r--r--. 1 root root        815 30. Jun 01:52 RTE.tar.gz
-rwxr-xr-x. 1 root root       8512 30. Jun 01:52 run_atlas
-rwx------. 1 4871  1028     15232 29. Jun 20:59 runpilot2-wrapper.sh
-rw-r--r--. 1 root root        692 30. Jun 12:29 runtime_log
-rw-r--r--. 1 root root       7087 30. Jun 12:29 runtime_log.err
drwxrwx--x. 2 root root       4096 30. Jun 12:29 shared
-rw-r--r--. 1 root root       8714 30. Jun 01:52 start_atlas.sh
-rw-r--r--. 1 root root      16753 30. Jun 12:29 stderr.txt
-rw-r--r--. 1 root root        107 30. Jun 01:52 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root         28 30. Jun 12:29 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
12:29:30 (28254): run_atlas exited; CPU time 37705.911830
12:29:30 (28254): called boinc_finish(0)

</stderr_txt>
]]>


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