Name | OftKDmPkX1unShfckohDCDFpABFKDmABFKDm96gLDmABFKDmndoJem_0 |
Workunit | 1907316 |
Created | 29 Jun 2019, 18:59:31 UTC |
Sent | 29 Jun 2019, 22:37:18 UTC |
Report deadline | 6 Jul 2019, 22:37:18 UTC |
Received | 30 Jun 2019, 8:58:36 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 2244 |
Run time | 10 hours 21 min 18 sec |
CPU time | 10 hours 34 min 8 sec |
Validate state | Valid |
Credit | 180.69 |
Device peak FLOPS | 2.09 GFLOPS |
Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
Peak working set size | 1.92 GB |
Peak swap size | 2.55 GB |
Peak disk usage | 843.86 MB |
<core_client_version>7.5.1</core_client_version> <![CDATA[ <stderr_txt> 01:52:08 (28254): wrapper (7.7.26015): starting 01:52:08 (28254): wrapper: running run_atlas (--nthreads 1) singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img sys.argv = ['run_atlas', '--nthreads', '1'] THREADS=1 Checking for CVMFS CVMFS is installed OS:Scientific Linux release 6.10 (Carbon) This is SLC or CentOS release 6, run the atlas job without Singularity copy /root/Downloads/BOINC/slots/5/shared/input.tar.gz copy /root/Downloads/BOINC/slots/5/shared/start_atlas.sh copy /root/Downloads/BOINC/slots/5/shared/ATLAS.root_0 copy /root/Downloads/BOINC/slots/5/shared/RTE.tar.gz start atlas job with cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err running cmd return value is 0 Moving ./HITS.18308834._050944.pool.root.1 to shared/HITS.pool.root.1 *****************The last 100 lines of the pilot log****************** 2019-06-30 10:28:19,331 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read) 2019-06-30 10:28:19,334 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/5/PanDA_Pilot-4399508229/memory_monitor_summary.json 2019-06-30 10:28:19,336 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2109748, 'maxSwap': 4, 'totRCHAR': 1549014879, 'totRBYTES': 1680977920, 'totWCHAR': 119816028, 'totWBYTES': 129781760, 'maxVMEM': 3445004, 'maxPSS': 2102206}, 'Avg': {'avgRSS': 2045264, 'rateWCHAR': 3160, 'avgVMEM': 3375286, 'avgPSS': 2037319, 'rateRCHAR': 40856, 'avgSwap': 0, 'rateRBYTES': 44336, 'rateWBYTES': 3423}} 2019-06-30 10:28:19,336 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json 2019-06-30 10:28:19,336 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json 2019-06-30 10:28:19,337 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | .............................. 2019-06-30 10:28:19,337 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements: 2019-06-30 10:28:19,337 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s 2019-06-30 10:28:19,337 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 17 s 2019-06-30 10:28:19,337 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s 2019-06-30 10:28:19,337 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 17 s 2019-06-30 10:28:19,337 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s 2019-06-30 10:28:19,338 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38041 s 2019-06-30 10:28:19,339 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 24 s 2019-06-30 10:28:19,339 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | .............................. 2019-06-30 10:28:19,339 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog') 2019-06-30 10:28:19,339 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/5/PanDA_Pilot-4399508229/pandatracerlog.txt (ignoring) 2019-06-30 10:28:19,339 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/5/PanDA_Pilot-4399508229/pilotlog.txt 2019-06-30 10:28:19,473 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt: 2019-06-30 10:28:19,537 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log: - Log from pilotlog.txt -2019-06-30 10:28:19,331 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 6.46 B/s (using 609 data points, chi2=23246006018.794960) 2019-06-30 10:28:19,331 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=6.46" 2019-06-30 10:28:19,331 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read) 2019-06-30 10:28:19,334 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/5/PanDA_Pilot-4399508229/memory_monitor_summary.json 2019-06-30 10:28:19,336 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2109748, 'maxSwap': 4, 'totRCHAR': 1549014879, 'totRBYTES': 1680977920, 'totWCHAR': 119816028, 'totWBYTES': 129781760, 'maxVMEM': 3445004, 'maxPSS': 2102206}, 'Avg': {'avgRSS': 2045264, 'rateWCHAR': 3160, 'avgVMEM': 3375286, 'avgPSS': 2037319, 'rateRCHAR': 40856, 'avgSwap': 0, 'rateRBYTES': 44336, 'rateWBYTES': 3423}} 2019-06-30 10:28:19,336 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json 2019-06-30 10:28:19,336 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json 2019-06-30 10:28:19,337 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | .............................. 2019-06-30 10:28:19,337 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements: 2019-06-30 10:28:19,337 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s 2019-06-30 10:28:19,337 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 17 s 2019-06-30 10:28:19,337 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s 2019-06-30 10:28:19,337 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 17 s 2019-06-30 10:28:19,337 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s 2019-06-30 10:28:19,338 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38041 s 2019-06-30 10:28:19,339 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 24 s 2019-06-30 10:28:19,339 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | .............................. 2019-06-30 10:28:19,339 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog') 2019-06-30 10:28:19,339 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/5/PanDA_Pilot-4399508229/pandatracerlog.txt (ignoring) 2019-06-30 10:28:19,339 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/5/PanDA_Pilot-4399508229/pilotlog.txt - Error messages from pilotlog.txt - "CRITICAL": 0, "ERROR": 0, "FATAL": 0, 2019-06-30 10:28:19,539 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/5/heartbeat.json 2019-06-30 10:28:19,540 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4399508229 was dequeued from the monitored payloads queue 2019-06-30 10:28:20,374 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-06-30 10:28:20,374 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report 2019-06-30 10:28:20,374 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-06-30 10:28:20,375 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4399508229 2019-06-30 10:28:20,375 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18308834 2019-06-30 10:28:20,375 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none) 2019-06-30 10:28:20,375 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE 2019-06-30 10:28:20,375 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished 2019-06-30 10:28:20,376 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0 2019-06-30 10:28:20,376 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0 2019-06-30 10:28:20,376 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag: 2019-06-30 10:28:20,376 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0 2019-06-30 10:28:20,376 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK 2019-06-30 10:28:20,376 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 37888 s 2019-06-30 10:28:20,376 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200 2019-06-30 10:28:20,376 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0 2019-06-30 10:28:20,376 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 2618 2019-06-30 10:28:20,377 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None 2019-06-30 10:28:20,377 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1 2019-06-30 10:28:20,377 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False 2019-06-30 10:28:20,377 | INFO | retrieve | pilot.util.auxiliary | make_job_report | -------------------------------------------------- 2019-06-30 10:28:20,377 | INFO | retrieve | pilot.util.auxiliary | make_job_report | 2019-06-30 10:28:20,377 | INFO | retrieve | pilot.control.job | has_job_completed | job 4399508229 has completed 2019-06-30 10:28:20,377 | INFO | retrieve | pilot.control.job | retrieve | ready for new job 2019-06-30 10:28:20,377 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1 2019-06-30 10:28:28,432 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 62 s) 2019-06-30 10:28:30,424 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1 2019-06-30 10:28:30,424 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/5 2019-06-30 10:28:30,566 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14131658752 B) 2019-06-30 10:28:30,566 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job 2019-06-30 10:28:30,614 | INFO | monitor | pilot.control.monitor | control | monitor control has ended 2019-06-30 10:28:30,617 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration 2019-06-30 10:28:30,618 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort 2019-06-30 10:28:30,665 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished 2019-06-30 10:28:30,666 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set 2019-06-30 10:28:31,071 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set 2019-06-30 10:28:31,178 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set 2019-06-30 10:28:31,420 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set 2019-06-30 10:28:31,628 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting 2019-06-30 10:28:31,629 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished 2019-06-30 10:28:31,785 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration 2019-06-30 10:28:32,402 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration 2019-06-30 10:28:32,403 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished 2019-06-30 10:28:34,809 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished 2019-06-30 10:29:29,495 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 123 s) 2019-06-30 10:29:29,495 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished 2019-06-30 10:29:29,496 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0) 2019-06-30 10:29:29,497 | INFO | MainThread | root | wrap_up | traces error code: 0 2019-06-30 10:29:29,497 | INFO | MainThread | root | wrap_up | pilot has finished ***************diag file************ runtimeenvironments=APPS/HEP/ATLAS-SITE; Processors=1 WallTime=38234.66s KernelTime=1097.39s UserTime=37705.49s CPUUsage=101% MaxResidentMemory=2010624kB AverageResidentMemory=0kB AverageTotalMemory=0kB AverageUnsharedMemory=0kB AverageUnsharedStack=0kB AverageSharedMemory=0kB PageSize=4096B MajorPageFaults=9812 MinorPageFaults=16105707 Swaps=0 ForcedSwitches=517560 WaitSwitches=20608311 Inputs=3377824 Outputs=309128 SocketReceived=0 SocketSent=0 Signals=0 nodename=maeax@APU8S exitcode=0 ******************************WorkDir*********************** insgesamt 384928 drwxrwx--x. 8 root root 4096 30. Jun 12:29 . drwxr-x--x. 8 root root 4096 30. Jun 01:52 .. -rw-------. 1 root root 7342324 30. Jun 01:53 agis_ddmendpoints.json -rw-------. 1 root root 4708881 30. Jun 01:53 agis_schedconf.cvmfs.json drwx------. 2 root root 4096 30. Jun 01:52 .alrb drwxr-xr-x. 3 root root 4096 30. Jun 01:52 APPS drwxr-xr-x. 2 root root 4096 30. Jun 01:52 .arc -rw-------. 1 root root 549 30. Jun 01:52 .asetup -rw-------. 1 root root 4198 30. Jun 01:54 .asetup.save -rw-r--r--. 1 root root 0 30. Jun 01:52 boinc_lockfile -rw-r--r--. 1 root root 8192 30. Jun 12:29 boinc_mmap_file -rw-r--r--. 1 root root 537 30. Jun 12:27 boinc_task_state.xml -rw-r--r--. 1 root root 377562745 30. Jun 01:52 EVNT.17324023._000974.pool.root.1 -rw-------. 1 root root 59728 30. Jun 12:28 heartbeat.json -rw-r--r--. 1 root root 5469 30. Jun 01:52 init_data.xml -rw-r--r--. 1 root root 246329 30. Jun 01:52 input.tar.gz -rw-r--r--. 1 root root 112 30. Jun 01:52 job.xml -rw-------. 1 root root 1748070 30. Jun 12:29 log.18308834._050944.job.log.1 -rw-------. 1 root root 321491 30. Jun 12:28 log.18308834._050944.job.log.tgz.1 -rw-------. 1 root root 306 30. Jun 12:27 memory_monitor_summary.json -rw-------. 1 root root 494 30. Jun 12:29 OftKDmPkX1unShfckohDCDFpABFKDmABFKDm96gLDmABFKDmndoJem.diag -rw-------. 1 root root 391 30. Jun 12:29 output.list -rw-------. 1 4871 1028 2886 29. Jun 20:59 pandaJobData.out drwxrwx---. 2 root root 4096 30. Jun 12:28 PanDA_Pilot-4399508229 drwxr-xr-x. 3 501 games 4096 31. Mai 14:36 pilot2 -rw-r--r--. 1 root root 237372 24. Jun 09:16 pilot2.tar.gz -rw-------. 1 root root 1728846 30. Jun 12:29 pilotlog.txt -rw-r--r--. 1 root root 4468 29. Jun 20:56 queuedata.json -rw-r--r--. 1 root root 815 30. Jun 01:52 RTE.tar.gz -rwxr-xr-x. 1 root root 8512 30. Jun 01:52 run_atlas -rwx------. 1 4871 1028 15232 29. Jun 20:59 runpilot2-wrapper.sh -rw-r--r--. 1 root root 692 30. Jun 12:29 runtime_log -rw-r--r--. 1 root root 7087 30. Jun 12:29 runtime_log.err drwxrwx--x. 2 root root 4096 30. Jun 12:29 shared -rw-r--r--. 1 root root 8714 30. Jun 01:52 start_atlas.sh -rw-r--r--. 1 root root 16753 30. Jun 12:29 stderr.txt -rw-r--r--. 1 root root 107 30. Jun 01:52 wrapper_26015_x86_64-pc-linux-gnu -rw-r--r--. 1 root root 28 30. Jun 12:29 wrapper_checkpoint.txt running start_atlas return value is 0 Parent exit 0 child process exit 0 12:29:30 (28254): run_atlas exited; CPU time 37705.911830 12:29:30 (28254): called boinc_finish(0) </stderr_txt> ]]>
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