| Name | fRVKDmRdS1unShfckohDCDFpABFKDmABFKDmNAVLDmABFKDmiFT6Ln_2 |
| Workunit | 1907273 |
| Created | 30 Jun 2019, 19:47:59 UTC |
| Sent | 1 Jul 2019, 6:47:22 UTC |
| Report deadline | 8 Jul 2019, 6:47:22 UTC |
| Received | 1 Jul 2019, 17:38:52 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 45 min 31 sec |
| CPU time | 10 hours 54 min 9 sec |
| Validate state | Valid |
| Credit | 187.73 |
| Device peak FLOPS | 2.09 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.92 GB |
| Peak swap size | 2.56 GB |
| Peak disk usage | 849.10 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
08:48:20 (15717): wrapper (7.7.26015): starting
08:48:20 (15717): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/2/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/2/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/2/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/2/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18308753._051636.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-07-01 17:37:06,913 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-07-01 17:37:06,914 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/2/PanDA_Pilot-4399140724/memory_monitor_summary.json
2019-07-01 17:37:06,916 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2118500, 'maxSwap': 0, 'totRCHAR': 1594956956, 'totRBYTES': 1653256192, 'totWCHAR': 123132228, 'totWBYTES': 133640192, 'maxVMEM': 3459528, 'maxPSS': 2111056}, 'Avg': {'avgRSS': 2078313, 'rateWCHAR': 3176, 'avgVMEM': 3414436, 'avgPSS': 2070645, 'rateRCHAR': 41146, 'avgSwap': 0, 'rateRBYTES': 42650, 'rateWBYTES': 3447}}
2019-07-01 17:37:06,916 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-07-01 17:37:06,916 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-07-01 17:37:06,917 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-01 17:37:06,917 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-07-01 17:37:06,917 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 7 s
2019-07-01 17:37:06,917 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-07-01 17:37:06,917 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-07-01 17:37:06,917 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-07-01 17:37:06,917 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 7 s
2019-07-01 17:37:06,918 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38826 s
2019-07-01 17:37:06,918 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 25 s
2019-07-01 17:37:06,918 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-01 17:37:06,918 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-07-01 17:37:06,919 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/2/PanDA_Pilot-4399140724/pandatracerlog.txt (ignoring)
2019-07-01 17:37:06,919 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/2/PanDA_Pilot-4399140724/pilotlog.txt
2019-07-01 17:37:07,054 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-07-01 17:37:07,122 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-07-01 17:37:06,913 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 3.09 B/s (using 631 data points, chi2=-264883233291.437073)
2019-07-01 17:37:06,913 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=3.09"
2019-07-01 17:37:06,913 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-07-01 17:37:06,914 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/2/PanDA_Pilot-4399140724/memory_monitor_summary.json
2019-07-01 17:37:06,916 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2118500, 'maxSwap': 0, 'totRCHAR': 1594956956, 'totRBYTES': 1653256192, 'totWCHAR': 123132228, 'totWBYTES': 133640192, 'maxVMEM': 3459528, 'maxPSS': 2111056}, 'Avg': {'avgRSS': 2078313, 'rateWCHAR': 3176, 'avgVMEM': 3414436, 'avgPSS': 2070645, 'rateRCHAR': 41146, 'avgSwap': 0, 'rateRBYTES': 42650, 'rateWBYTES': 3447}}
2019-07-01 17:37:06,916 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-07-01 17:37:06,916 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-07-01 17:37:06,917 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-01 17:37:06,917 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-07-01 17:37:06,917 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 7 s
2019-07-01 17:37:06,917 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 16 s
2019-07-01 17:37:06,917 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-07-01 17:37:06,917 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 16 s
2019-07-01 17:37:06,917 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 7 s
2019-07-01 17:37:06,918 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 38826 s
2019-07-01 17:37:06,918 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 25 s
2019-07-01 17:37:06,918 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-01 17:37:06,918 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-07-01 17:37:06,919 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/2/PanDA_Pilot-4399140724/pandatracerlog.txt (ignoring)
2019-07-01 17:37:06,919 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/2/PanDA_Pilot-4399140724/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-07-01 17:37:07,124 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/2/heartbeat.json
2019-07-01 17:37:07,125 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4399140724 was dequeued from the monitored payloads queue
2019-07-01 17:37:08,204 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-07-01 17:37:08,204 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-07-01 17:37:08,204 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-07-01 17:37:08,204 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4399140724
2019-07-01 17:37:08,205 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18308753
2019-07-01 17:37:08,205 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-07-01 17:37:08,205 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-07-01 17:37:08,205 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-07-01 17:37:08,205 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-07-01 17:37:08,205 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-07-01 17:37:08,205 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-07-01 17:37:08,205 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-07-01 17:37:08,206 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-07-01 17:37:08,206 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 38999 s
2019-07-01 17:37:08,206 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200
2019-07-01 17:37:08,206 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-07-01 17:37:08,206 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 22352
2019-07-01 17:37:08,206 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-07-01 17:37:08,206 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-07-01 17:37:08,206 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-07-01 17:37:08,206 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-07-01 17:37:08,206 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-07-01 17:37:08,207 | INFO | retrieve | pilot.control.job | has_job_completed | job 4399140724 has completed
2019-07-01 17:37:08,207 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-07-01 17:37:08,207 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-07-01 17:37:16,146 | INFO | monitor | pilot.control.monitor | control | 38908 s have passed since pilot start
2019-07-01 17:37:18,260 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-07-01 17:37:18,260 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/2
2019-07-01 17:37:18,282 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (13884194816 B)
2019-07-01 17:37:18,283 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-07-01 17:37:18,303 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-07-01 17:37:18,303 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-07-01 17:37:18,327 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-07-01 17:37:18,570 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-07-01 17:37:18,676 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-07-01 17:37:18,676 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-07-01 17:37:18,913 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-07-01 17:37:19,000 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-07-01 17:37:19,160 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-07-01 17:37:19,316 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-07-01 17:37:19,316 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-07-01 17:37:19,954 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-07-01 17:37:19,954 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-07-01 17:37:21,753 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-07-01 17:37:35,860 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-07-01 17:37:35,860 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-07-01 17:37:35,861 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-07-01 17:37:35,861 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-07-01 17:37:35,862 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=38952.13s
KernelTime=756.94s
UserTime=38998.46s
CPUUsage=102%
MaxResidentMemory=2018124kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9838
MinorPageFaults=16315692
Swaps=0
ForcedSwitches=687947
WaitSwitches=22788675
Inputs=3395712
Outputs=320808
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 384644
drwxrwx--x. 8 root root 4096 1. Jul 19:37 .
drwxr-x--x. 5 root root 4096 1. Jul 08:48 ..
-rw-------. 1 root root 7342324 1. Jul 08:48 agis_ddmendpoints.json
-rw-------. 1 root root 4710647 1. Jul 08:48 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 1. Jul 08:48 .alrb
drwxr-xr-x. 3 root root 4096 1. Jul 08:48 APPS
drwxr-xr-x. 2 root root 4096 1. Jul 08:48 .arc
-rw-------. 1 root root 549 1. Jul 08:48 .asetup
-rw-------. 1 root root 4198 1. Jul 08:49 .asetup.save
-rw-r--r--. 1 root root 0 1. Jul 08:48 boinc_lockfile
-rw-r--r--. 1 root root 8192 1. Jul 19:37 boinc_mmap_file
-rw-r--r--. 1 root root 537 1. Jul 19:36 boinc_task_state.xml
-rw-r--r--. 1 root root 377167930 1. Jul 08:48 EVNT.17324019._000991.pool.root.1
-rw-------. 1 root root 493 1. Jul 19:37 fRVKDmRdS1unShfckohDCDFpABFKDmABFKDmNAVLDmABFKDmiFT6Ln.diag
-rw-------. 1 root root 59496 1. Jul 19:37 heartbeat.json
-rw-r--r--. 1 root root 5469 1. Jul 08:48 init_data.xml
-rw-r--r--. 1 root root 246320 1. Jul 08:48 input.tar.gz
-rw-r--r--. 1 root root 112 1. Jul 08:48 job.xml
-rw-------. 1 root root 1794859 1. Jul 19:37 log.18308753._051636.job.log.1
-rw-------. 1 root root 324515 1. Jul 19:36 log.18308753._051636.job.log.tgz.1
-rw-------. 1 root root 306 1. Jul 19:36 memory_monitor_summary.json
-rw-------. 1 root root 391 1. Jul 19:37 output.list
-rw-------. 1 4871 1028 2884 29. Jun 15:31 pandaJobData.out
drwxrwx---. 2 root root 4096 1. Jul 19:37 PanDA_Pilot-4399140724
drwxr-xr-x. 3 501 games 4096 31. Mai 14:36 pilot2
-rw-r--r--. 1 root root 237372 24. Jun 09:16 pilot2.tar.gz
-rw-------. 1 root root 1775635 1. Jul 19:37 pilotlog.txt
-rw-r--r--. 1 root root 4468 29. Jun 15:30 queuedata.json
-rw-r--r--. 1 root root 815 1. Jul 08:48 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 1. Jul 08:48 run_atlas
-rwx------. 1 4871 1028 15232 29. Jun 15:31 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 1. Jul 19:37 runtime_log
-rw-r--r--. 1 root root 7087 1. Jul 19:37 runtime_log.err
drwxrwx--x. 2 root root 4096 1. Jul 19:37 shared
-rw-r--r--. 1 root root 8714 1. Jul 08:48 start_atlas.sh
-rw-r--r--. 1 root root 16733 1. Jul 19:37 stderr.txt
-rw-r--r--. 1 root root 107 1. Jul 08:48 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 1. Jul 19:37 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
19:37:37 (15717): run_atlas exited; CPU time 38998.825277
19:37:37 (15717): called boinc_finish(0)
</stderr_txt>
]]>
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