| Name | HNiLDmVsLzunShfckohDCDFpABFKDmABFKDm8zAYDmABFKDmtrt2hn_2 |
| Workunit | 1906415 |
| Created | 2 Jul 2019, 0:02:47 UTC |
| Sent | 2 Jul 2019, 3:50:18 UTC |
| Report deadline | 9 Jul 2019, 3:50:18 UTC |
| Received | 2 Jul 2019, 8:20:48 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 4008 |
| Run time | 4 hours 7 min 56 sec |
| CPU time | 14 hours 54 min 26 sec |
| Validate state | Valid |
| Credit | 390.81 |
| Device peak FLOPS | 11.35 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.80 GB |
| Peak swap size | 2.55 GB |
| Peak disk usage | 844.86 MB |
Stderr output
<core_client_version>7.14.2</core_client_version>
<![CDATA[
<stderr_txt>
06:10:25 (12049): wrapper (7.7.26015): starting
06:10:25 (12049): wrapper: running run_atlas (--nthreads 4)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '4']
THREADS=4
Checking for CVMFS
CVMFS is installed
OS:CentOS Linux release 7.4.1708 (Core)
This is not SLC6, need to run with Singularity....
Checking Singularity...
Singularity is installed
copy /root/slots/3/shared/ATLAS.root_0
copy /root/slots/3/shared/input.tar.gz
copy /root/slots/3/shared/RTE.tar.gz
copy /root/slots/3/shared/start_atlas.sh
export ATHENA_PROC_NUMBER=4;start atlas job with
Testing the function of Singularity...
check singularity with cmd:singularity exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img hostname
Singularity Works...
cmd = singularity exec --pwd /root/slots/3 -B /cvmfs,/root /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18410984._001189.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-07-02 08:17:18,001 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=4 nEvents=200 leak=-11.56"
2019-07-02 08:17:18,002 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-07-02 08:17:18,003 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/slots/3/PanDA_Pilot-4392111426/memory_monitor_summary.json
2019-07-02 08:17:18,005 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 10853012, 'maxSwap': 0, 'totRCHAR': 2603574991, 'totRBYTES': 3596844032, 'totWCHAR': 199404560, 'totWBYTES': 199315456, 'maxVMEM': 16728272, 'maxPSS': 2637430}, 'Avg': {'avgRSS': 8633298, 'rateWCHAR': 13616, 'avgVMEM': 13070879, 'avgPSS': 2429400, 'rateRCHAR': 177791, 'avgSwap': 0, 'rateRBYTES': 245618, 'rateWBYTES': 13610}}
2019-07-02 08:17:18,005 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-07-02 08:17:18,005 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-07-02 08:17:18,005 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-02 08:17:18,006 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-07-02 08:17:18,006 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 11 s
2019-07-02 08:17:18,006 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 18 s
2019-07-02 08:17:18,006 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-07-02 08:17:18,006 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 18 s
2019-07-02 08:17:18,006 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-07-02 08:17:18,006 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 14682 s
2019-07-02 08:17:18,006 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 40 s
2019-07-02 08:17:18,006 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-02 08:17:18,007 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-07-02 08:17:18,007 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/slots/3/PanDA_Pilot-4392111426/pandatracerlog.txt (ignoring)
2019-07-02 08:17:18,007 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/slots/3/PanDA_Pilot-4392111426/pilotlog.txt
2019-07-02 08:17:18,069 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-07-02 08:17:18,070 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-07-02 08:17:18,001 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: -11.56 B/s (using 224 data points, chi2=2674259199.515330)
2019-07-02 08:17:18,001 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=4 nEvents=200 leak=-11.56"
2019-07-02 08:17:18,002 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-07-02 08:17:18,003 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/slots/3/PanDA_Pilot-4392111426/memory_monitor_summary.json
2019-07-02 08:17:18,005 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 10853012, 'maxSwap': 0, 'totRCHAR': 2603574991, 'totRBYTES': 3596844032, 'totWCHAR': 199404560, 'totWBYTES': 199315456, 'maxVMEM': 16728272, 'maxPSS': 2637430}, 'Avg': {'avgRSS': 8633298, 'rateWCHAR': 13616, 'avgVMEM': 13070879, 'avgPSS': 2429400, 'rateRCHAR': 177791, 'avgSwap': 0, 'rateRBYTES': 245618, 'rateWBYTES': 13610}}
2019-07-02 08:17:18,005 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-07-02 08:17:18,005 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-07-02 08:17:18,005 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-02 08:17:18,006 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-07-02 08:17:18,006 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 11 s
2019-07-02 08:17:18,006 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 18 s
2019-07-02 08:17:18,006 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-07-02 08:17:18,006 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 18 s
2019-07-02 08:17:18,006 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-07-02 08:17:18,006 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 14682 s
2019-07-02 08:17:18,006 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 40 s
2019-07-02 08:17:18,006 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-02 08:17:18,007 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-07-02 08:17:18,007 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/slots/3/PanDA_Pilot-4392111426/pandatracerlog.txt (ignoring)
2019-07-02 08:17:18,007 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/slots/3/PanDA_Pilot-4392111426/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-07-02 08:17:18,071 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/slots/3/heartbeat.json
2019-07-02 08:17:18,072 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4392111426 was dequeued from the monitored payloads queue
2019-07-02 08:17:19,198 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-07-02 08:17:19,198 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-07-02 08:17:19,198 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-07-02 08:17:19,198 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4392111426
2019-07-02 08:17:19,198 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18410984
2019-07-02 08:17:19,199 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-07-02 08:17:19,199 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-07-02 08:17:19,199 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-07-02 08:17:19,199 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-07-02 08:17:19,199 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-07-02 08:17:19,200 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-07-02 08:17:19,200 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-07-02 08:17:19,200 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-07-02 08:17:19,200 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 53972 s
2019-07-02 08:17:19,200 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200
2019-07-02 08:17:19,200 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-07-02 08:17:19,201 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 19204
2019-07-02 08:17:19,201 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-07-02 08:17:19,201 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 4
2019-07-02 08:17:19,201 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-07-02 08:17:19,201 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-07-02 08:17:19,202 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-07-02 08:17:19,202 | INFO | retrieve | pilot.control.job | has_job_completed | job 4392111426 has completed
2019-07-02 08:17:19,202 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-07-02 08:17:19,202 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-07-02 08:17:29,238 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-07-02 08:17:29,238 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/slots/3
2019-07-02 08:17:29,254 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (15372124160 B)
2019-07-02 08:17:29,254 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-07-02 08:17:29,273 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-07-02 08:17:29,359 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-07-02 08:17:29,359 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-07-02 08:17:29,681 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-07-02 08:17:29,746 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-07-02 08:17:29,784 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-07-02 08:17:29,847 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-07-02 08:17:30,294 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-07-02 08:17:30,361 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-07-02 08:17:30,362 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-07-02 08:17:30,645 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-07-02 08:17:31,196 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-07-02 08:17:31,197 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-07-02 08:17:33,647 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-07-02 08:18:18,491 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-07-02 08:18:18,492 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-07-02 08:18:18,492 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-07-02 08:18:18,492 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-07-02 08:18:18,492 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=14863.02s
KernelTime=773.34s
UserTime=53618.32s
CPUUsage=365%
MaxResidentMemory=1952708kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=20956
MinorPageFaults=14698209
Swaps=0
ForcedSwitches=4836546
WaitSwitches=10808631
Inputs=7184420
Outputs=527136
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@HPi7COS7
exitcode=0
******************************WorkDir***********************
insgesamt 380572
drwxrwx--x. 8 root root 4096 2. Jul 10:18 .
drwxrwx--x. 7 root root 51 29. Jun 17:26 ..
-rw-------. 1 root root 7353000 2. Jul 06:10 agis_ddmendpoints.json
-rw-------. 1 root root 4646364 2. Jul 06:10 agis_schedconf.cvmfs.json
drwx------. 2 root root 6 2. Jul 06:10 .alrb
drwxr-xr-x. 3 root root 17 2. Jul 06:10 APPS
drwxr-xr-x. 2 root root 6 2. Jul 06:10 .arc
-rw-------. 1 root root 533 2. Jul 06:10 .asetup
-rw-------. 1 root root 4182 2. Jul 06:11 .asetup.save
-rw-r--r--. 1 root root 0 2. Jul 06:10 boinc_lockfile
-rw-r--r--. 1 root root 8192 2. Jul 10:18 boinc_mmap_file
-rw-r--r--. 1 root root 537 2. Jul 10:03 boinc_task_state.xml
-rw-r--r--. 1 root root 374582205 2. Jul 06:10 EVNT.17324038._000124.pool.root.1
-rw-------. 1 root root 57999 2. Jul 10:17 heartbeat.json
-rw-------. 1 root root 498 2. Jul 10:18 HNiLDmVsLzunShfckohDCDFpABFKDmABFKDm8zAYDmABFKDmtrt2hn.diag
-rw-r--r--. 1 root root 5862 2. Jul 06:10 init_data.xml
-rw-r--r--. 1 root root 300779 2. Jul 06:10 input.tar.gz
-rw-r--r--. 1 root root 112 2. Jul 06:10 job.xml
-rw-------. 1 root root 728500 2. Jul 10:18 log.18410984._001189.job.log.1
-rw-------. 1 root root 850504 2. Jul 10:16 log.18410984._001189.job.log.tgz.1
-rw-------. 1 root root 313 2. Jul 10:16 memory_monitor_summary.json
-rw-------. 1 root root 391 2. Jul 10:18 output.list
-rw-------. 1 4871 1028 2882 23. Jun 19:54 pandaJobData.out
drwxrwx---. 3 root root 4096 2. Jul 10:17 PanDA_Pilot-4392111426
drwxr-xr-x. 3 501 games 186 19. Jun 10:35 pilot2
-rw-r--r--. 1 root root 291964 20. Jun 14:23 pilot2.tar.gz
-rw-------. 1 root root 708211 2. Jul 10:18 pilotlog.txt
-rw-r--r--. 1 root root 4468 23. Jun 19:50 queuedata.json
-rw-r--r--. 1 root root 815 2. Jul 06:10 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 2. Jul 06:10 run_atlas
-rwx------. 1 4871 1028 15232 23. Jun 19:54 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 2. Jul 10:18 runtime_log
-rw-r--r--. 1 root root 6805 2. Jul 10:18 runtime_log.err
drwxrwx--x. 2 root root 131 2. Jul 10:18 shared
-rw-r--r--. 1 root root 8743 2. Jul 06:10 start_atlas.sh
-rw-r--r--. 1 root root 16951 2. Jul 10:18 stderr.txt
-rw-r--r--. 1 root root 107 2. Jul 06:10 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 2. Jul 10:18 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
10:18:18 (12049): run_atlas exited; CPU time 53618.852798
10:18:18 (12049): called boinc_finish(0)
</stderr_txt>
]]>
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