| Name | s7mKDmHoX2unShfckohDCDFpABFKDmABFKDmCa2NDmABFKDmOpU9Zm_0 |
| Workunit | 1907725 |
| Created | 2 Jul 2019, 13:15:38 UTC |
| Sent | 2 Jul 2019, 14:36:00 UTC |
| Report deadline | 9 Jul 2019, 14:36:00 UTC |
| Received | 3 Jul 2019, 0:56:35 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 10 hours 12 min 41 sec |
| CPU time | 10 hours 13 min 41 sec |
| Validate state | Valid |
| Credit | 178.18 |
| Device peak FLOPS | 2.09 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.56 GB |
| Peak disk usage | 836.66 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
16:37:36 (343): wrapper (7.7.26015): starting
16:37:36 (343): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/5/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/5/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/5/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/5/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18411005._039849.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-07-03 00:54:17,476 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=7.33"
2019-07-03 00:54:17,477 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-07-03 00:54:17,478 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/5/PanDA_Pilot-4402058362/memory_monitor_summary.json
2019-07-03 00:54:17,480 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2107288, 'maxSwap': 4, 'totRCHAR': 1511317351, 'totRBYTES': 1647484928, 'totWCHAR': 113873596, 'totWBYTES': 123580416, 'maxVMEM': 3451904, 'maxPSS': 2099832}, 'Avg': {'avgRSS': 2046801, 'rateWCHAR': 3101, 'avgVMEM': 3379485, 'avgPSS': 2038856, 'rateRCHAR': 41166, 'avgSwap': 0, 'rateRBYTES': 44875, 'rateWBYTES': 3366}}
2019-07-03 00:54:17,481 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-07-03 00:54:17,481 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-07-03 00:54:17,481 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-03 00:54:17,481 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-07-03 00:54:17,482 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-07-03 00:54:17,482 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 17 s
2019-07-03 00:54:17,482 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-07-03 00:54:17,482 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 17 s
2019-07-03 00:54:17,482 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-07-03 00:54:17,483 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 36848 s
2019-07-03 00:54:17,483 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 32 s
2019-07-03 00:54:17,483 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-03 00:54:17,484 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-07-03 00:54:17,484 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/5/PanDA_Pilot-4402058362/pandatracerlog.txt (ignoring)
2019-07-03 00:54:17,484 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/5/PanDA_Pilot-4402058362/pilotlog.txt
2019-07-03 00:54:17,641 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-07-03 00:54:17,705 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-07-03 00:54:17,476 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 7.33 B/s (using 587 data points, chi2=-246338762441.480438)
2019-07-03 00:54:17,476 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=7.33"
2019-07-03 00:54:17,477 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-07-03 00:54:17,478 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/5/PanDA_Pilot-4402058362/memory_monitor_summary.json
2019-07-03 00:54:17,480 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2107288, 'maxSwap': 4, 'totRCHAR': 1511317351, 'totRBYTES': 1647484928, 'totWCHAR': 113873596, 'totWBYTES': 123580416, 'maxVMEM': 3451904, 'maxPSS': 2099832}, 'Avg': {'avgRSS': 2046801, 'rateWCHAR': 3101, 'avgVMEM': 3379485, 'avgPSS': 2038856, 'rateRCHAR': 41166, 'avgSwap': 0, 'rateRBYTES': 44875, 'rateWBYTES': 3366}}
2019-07-03 00:54:17,481 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-07-03 00:54:17,481 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-07-03 00:54:17,481 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-03 00:54:17,481 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-07-03 00:54:17,482 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-07-03 00:54:17,482 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 17 s
2019-07-03 00:54:17,482 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-07-03 00:54:17,482 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 17 s
2019-07-03 00:54:17,482 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-07-03 00:54:17,483 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 36848 s
2019-07-03 00:54:17,483 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 32 s
2019-07-03 00:54:17,483 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-03 00:54:17,484 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-07-03 00:54:17,484 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/5/PanDA_Pilot-4402058362/pandatracerlog.txt (ignoring)
2019-07-03 00:54:17,484 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/5/PanDA_Pilot-4402058362/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-07-03 00:54:17,716 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/5/heartbeat.json
2019-07-03 00:54:17,716 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4402058362 was dequeued from the monitored payloads queue
2019-07-03 00:54:18,854 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-07-03 00:54:18,855 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-07-03 00:54:18,855 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-07-03 00:54:18,898 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4402058362
2019-07-03 00:54:18,899 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18411005
2019-07-03 00:54:18,899 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-07-03 00:54:18,899 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-07-03 00:54:18,899 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-07-03 00:54:18,899 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-07-03 00:54:18,899 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-07-03 00:54:18,899 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-07-03 00:54:18,900 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-07-03 00:54:18,900 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-07-03 00:54:18,900 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 36660 s
2019-07-03 00:54:18,900 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200
2019-07-03 00:54:18,900 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-07-03 00:54:18,900 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 7241
2019-07-03 00:54:18,900 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-07-03 00:54:18,900 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-07-03 00:54:18,900 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-07-03 00:54:18,901 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-07-03 00:54:18,901 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-07-03 00:54:18,901 | INFO | retrieve | pilot.control.job | has_job_completed | job 4402058362 has completed
2019-07-03 00:54:18,901 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-07-03 00:54:18,901 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-07-03 00:54:28,943 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-07-03 00:54:28,944 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/5
2019-07-03 00:54:29,032 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (14116978688 B)
2019-07-03 00:54:29,032 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-07-03 00:54:29,077 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-07-03 00:54:29,221 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-07-03 00:54:29,425 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-07-03 00:54:29,437 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-07-03 00:54:29,726 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-07-03 00:54:29,726 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-07-03 00:54:29,774 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-07-03 00:54:29,855 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-07-03 00:54:30,452 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-07-03 00:54:30,745 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-07-03 00:54:30,745 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-07-03 00:54:30,859 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-07-03 00:54:30,860 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-07-03 00:54:33,499 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-07-03 00:55:18,222 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-07-03 00:55:18,223 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-07-03 00:55:18,224 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-07-03 00:55:18,224 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-07-03 00:55:18,225 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=37051.91s
KernelTime=1298.58s
UserTime=36517.66s
CPUUsage=102%
MaxResidentMemory=2017956kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9838
MinorPageFaults=16353660
Swaps=0
ForcedSwitches=597089
WaitSwitches=22541835
Inputs=3382096
Outputs=308480
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 382476
drwxrwx--x. 8 root root 4096 3. Jul 02:55 .
drwxr-x--x. 8 root root 4096 2. Jul 16:37 ..
-rw-------. 1 root root 7353000 2. Jul 16:38 agis_ddmendpoints.json
-rw-------. 1 root root 4645461 2. Jul 16:38 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 2. Jul 16:37 .alrb
drwxr-xr-x. 3 root root 4096 2. Jul 16:37 APPS
drwxr-xr-x. 2 root root 4096 2. Jul 16:38 .arc
-rw-------. 1 root root 549 2. Jul 16:38 .asetup
-rw-------. 1 root root 4198 2. Jul 16:39 .asetup.save
-rw-r--r--. 1 root root 0 2. Jul 16:37 boinc_lockfile
-rw-r--r--. 1 root root 8192 3. Jul 02:55 boinc_mmap_file
-rw-r--r--. 1 root root 537 3. Jul 02:53 boinc_task_state.xml
-rw-r--r--. 1 root root 375223707 2. Jul 16:37 EVNT.17324040._000768.pool.root.1
-rw-------. 1 root root 53174 3. Jul 02:54 heartbeat.json
-rw-r--r--. 1 root root 5469 2. Jul 16:37 init_data.xml
-rw-r--r--. 1 root root 246326 2. Jul 16:37 input.tar.gz
-rw-r--r--. 1 root root 112 2. Jul 16:37 job.xml
-rw-------. 1 root root 1691992 3. Jul 02:55 log.18411005._039849.job.log.1
-rw-------. 1 root root 318470 3. Jul 02:53 log.18411005._039849.job.log.tgz.1
-rw-------. 1 root root 306 3. Jul 02:53 memory_monitor_summary.json
-rw-------. 1 root root 391 3. Jul 02:55 output.list
-rw-------. 1 4871 1028 2887 2. Jul 15:15 pandaJobData.out
drwxrwx---. 2 root root 4096 3. Jul 02:54 PanDA_Pilot-4402058362
drwxr-xr-x. 3 501 games 4096 31. Mai 14:36 pilot2
-rw-r--r--. 1 root root 237372 24. Jun 09:16 pilot2.tar.gz
-rw-------. 1 root root 1672768 3. Jul 02:55 pilotlog.txt
-rw-r--r--. 1 root root 4468 2. Jul 15:15 queuedata.json
-rw-r--r--. 1 root root 815 2. Jul 16:37 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 2. Jul 16:37 run_atlas
-rwx------. 1 4871 1028 15232 2. Jul 15:15 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 3. Jul 02:55 runtime_log
-rw-r--r--. 1 root root 7087 3. Jul 02:55 runtime_log.err
-rw-------. 1 root root 494 3. Jul 02:55 s7mKDmHoX2unShfckohDCDFpABFKDmABFKDmCa2NDmABFKDmOpU9Zm.diag
drwxrwx--x. 2 root root 4096 3. Jul 02:55 shared
-rw-r--r--. 1 root root 8714 2. Jul 16:37 start_atlas.sh
-rw-r--r--. 1 root root 16739 3. Jul 02:55 stderr.txt
-rw-r--r--. 1 root root 107 2. Jul 16:37 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 3. Jul 02:55 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
02:55:19 (343): run_atlas exited; CPU time 36518.399359
02:55:19 (343): called boinc_finish(0)
</stderr_txt>
]]>
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