| Name | NteMDmNbg2unShfckohDCDFpABFKDmABFKDmw4MODmABFKDmU5dvQo_0 |
| Workunit | 1907752 |
| Created | 2 Jul 2019, 22:39:51 UTC |
| Sent | 3 Jul 2019, 0:56:35 UTC |
| Report deadline | 10 Jul 2019, 0:56:35 UTC |
| Received | 3 Jul 2019, 14:55:33 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 2244 |
| Run time | 13 hours 51 min 39 sec |
| CPU time | 13 hours 54 min 57 sec |
| Validate state | Valid |
| Credit | 241.86 |
| Device peak FLOPS | 2.09 GFLOPS |
| Application version | ATLAS Simulation v0.62 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 1.91 GB |
| Peak swap size | 2.55 GB |
| Peak disk usage | 842.97 MB |
Stderr output
<core_client_version>7.5.1</core_client_version>
<![CDATA[
<stderr_txt>
02:57:56 (5362): wrapper (7.7.26015): starting
02:57:56 (5362): wrapper: running run_atlas (--nthreads 1)
singularity image is /cvmfs/atlas.cern.ch/repo/containers/images/singularity/x86_64-slc6.img
sys.argv = ['run_atlas', '--nthreads', '1']
THREADS=1
Checking for CVMFS
CVMFS is installed
OS:Scientific Linux release 6.10 (Carbon)
This is SLC or CentOS release 6, run the atlas job without Singularity
copy /root/Downloads/BOINC/slots/6/shared/input.tar.gz
copy /root/Downloads/BOINC/slots/6/shared/start_atlas.sh
copy /root/Downloads/BOINC/slots/6/shared/ATLAS.root_0
copy /root/Downloads/BOINC/slots/6/shared/RTE.tar.gz
start atlas job with
cmd = sh start_atlas.sh > runtime_log 2> runtime_log.err
running cmd return value is 0
Moving ./HITS.18514543._000336.pool.root.1 to shared/HITS.pool.root.1
*****************The last 100 lines of the pilot log******************
2019-07-03 14:53:50,082 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=4.65"
2019-07-03 14:53:50,082 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-07-03 14:53:50,083 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/6/PanDA_Pilot-4402526846/memory_monitor_summary.json
2019-07-03 14:53:50,085 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2108124, 'maxSwap': 0, 'totRCHAR': 1838599309, 'totRBYTES': 1647456256, 'totWCHAR': 116783454, 'totWBYTES': 129794048, 'maxVMEM': 3452456, 'maxPSS': 2100679}, 'Avg': {'avgRSS': 2052761, 'rateWCHAR': 2343, 'avgVMEM': 3385624, 'avgPSS': 2044948, 'rateRCHAR': 36901, 'avgSwap': 0, 'rateRBYTES': 33064, 'rateWBYTES': 2604}}
2019-07-03 14:53:50,086 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-07-03 14:53:50,086 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-07-03 14:53:50,086 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-03 14:53:50,086 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-07-03 14:53:50,086 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-07-03 14:53:50,086 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 17 s
2019-07-03 14:53:50,087 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-07-03 14:53:50,087 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 17 s
2019-07-03 14:53:50,087 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-07-03 14:53:50,087 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 49995 s
2019-07-03 14:53:50,087 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 35 s
2019-07-03 14:53:50,087 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-03 14:53:50,088 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-07-03 14:53:50,088 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/6/PanDA_Pilot-4402526846/pandatracerlog.txt (ignoring)
2019-07-03 14:53:50,089 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/6/PanDA_Pilot-4402526846/pilotlog.txt
2019-07-03 14:53:50,326 | DEBUG | queue_monitor | pilot.util.auxiliary | get_pilot_log_extracts | dumping warning messages from pilotlog.txt:
2019-07-03 14:53:50,327 | WARNING | queue_monitor | pilot.util.auxiliary | get_log_extracts | detected the following tail of warning/fatal messages in the pilot log:
- Log from pilotlog.txt -2019-07-03 14:53:50,081 | INFO | queue_monitor | pilot.api.analytics | get_fitted_data | current memory leak: 4.65 B/s (using 799 data points, chi2=-168098734131.395264)
2019-07-03 14:53:50,082 | DEBUG | queue_monitor | pilot.util.auxiliary | get_job_metrics | job metrics="coreCount=1 nEvents=200 leak=4.65"
2019-07-03 14:53:50,082 | INFO | queue_monitor | pilot.control.job | get_data_structure | total number of processed events: 200 (read)
2019-07-03 14:53:50,083 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_values | using path: /root/Downloads/BOINC/slots/6/PanDA_Pilot-4402526846/memory_monitor_summary.json
2019-07-03 14:53:50,085 | DEBUG | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | summary_dictionary={'Max': {'maxRSS': 2108124, 'maxSwap': 0, 'totRCHAR': 1838599309, 'totRBYTES': 1647456256, 'totWCHAR': 116783454, 'totWBYTES': 129794048, 'maxVMEM': 3452456, 'maxPSS': 2100679}, 'Avg': {'avgRSS': 2052761, 'rateWCHAR': 2343, 'avgVMEM': 3385624, 'avgPSS': 2044948, 'rateRCHAR': 36901, 'avgSwap': 0, 'rateRBYTES': 33064, 'rateWBYTES': 2604}}
2019-07-03 14:53:50,086 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard info from memory monitor json
2019-07-03 14:53:50,086 | INFO | queue_monitor | pilot.user.atlas.utilities | get_memory_monitor_info | extracted standard memory fields from memory monitor json
2019-07-03 14:53:50,086 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-03 14:53:50,086 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . Timing measurements:
2019-07-03 14:53:50,086 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . get job = 9 s
2019-07-03 14:53:50,086 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . initial setup = 17 s
2019-07-03 14:53:50,087 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload setup = 0 s
2019-07-03 14:53:50,087 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . total setup = 17 s
2019-07-03 14:53:50,087 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-in = 8 s
2019-07-03 14:53:50,087 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . payload execution = 49995 s
2019-07-03 14:53:50,087 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | . stage-out = 35 s
2019-07-03 14:53:50,087 | INFO | queue_monitor | pilot.util.auxiliary | timing_report | ..............................
2019-07-03 14:53:50,088 | INFO | queue_monitor | pilot.util.auxiliary | get_log_extracts | building log extracts (sent to the server as 'pilotLog')
2019-07-03 14:53:50,088 | DEBUG | queue_monitor | pilot.util.auxiliary | get_panda_tracer_log | PanDA tracer log does not exist: /root/Downloads/BOINC/slots/6/PanDA_Pilot-4402526846/pandatracerlog.txt (ignoring)
2019-07-03 14:53:50,089 | INFO | queue_monitor | pilot.util.container | execute | executing command: tail -n 20 /root/Downloads/BOINC/slots/6/PanDA_Pilot-4402526846/pilotlog.txt
- Error messages from pilotlog.txt -
"CRITICAL": 0,
"ERROR": 0,
"FATAL": 0,
2019-07-03 14:53:50,328 | DEBUG | queue_monitor | pilot.control.job | send_state | wrote heartbeat to file /root/Downloads/BOINC/slots/6/heartbeat.json
2019-07-03 14:53:50,329 | INFO | queue_monitor | pilot.control.job | queue_monitor | job 4402526846 was dequeued from the monitored payloads queue
2019-07-03 14:53:51,624 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-07-03 14:53:51,624 | INFO | retrieve | pilot.util.auxiliary | make_job_report | job summary report
2019-07-03 14:53:51,624 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-07-03 14:53:51,625 | INFO | retrieve | pilot.util.auxiliary | make_job_report | PanDA job id: 4402526846
2019-07-03 14:53:51,625 | INFO | retrieve | pilot.util.auxiliary | make_job_report | task id: 18514543
2019-07-03 14:53:51,625 | INFO | retrieve | pilot.util.auxiliary | make_job_report | errors: (none)
2019-07-03 14:53:51,627 | INFO | retrieve | pilot.util.auxiliary | make_job_report | status: LOG_TRANSFER = DONE
2019-07-03 14:53:51,627 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pilot state: finished
2019-07-03 14:53:51,627 | INFO | retrieve | pilot.util.auxiliary | make_job_report | transexitcode: 0
2019-07-03 14:53:51,628 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrorcode: 0
2019-07-03 14:53:51,628 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exeerrordiag:
2019-07-03 14:53:51,629 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitcode: 0
2019-07-03 14:53:51,629 | INFO | retrieve | pilot.util.auxiliary | make_job_report | exitmsg: OK
2019-07-03 14:53:51,629 | INFO | retrieve | pilot.util.auxiliary | make_job_report | cpuconsumptiontime: 49893 s
2019-07-03 14:53:51,629 | INFO | retrieve | pilot.util.auxiliary | make_job_report | nevents: 200
2019-07-03 14:53:51,629 | INFO | retrieve | pilot.util.auxiliary | make_job_report | neventsw: 0
2019-07-03 14:53:51,629 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pid: 12122
2019-07-03 14:53:51,629 | INFO | retrieve | pilot.util.auxiliary | make_job_report | pgrp: None
2019-07-03 14:53:51,629 | INFO | retrieve | pilot.util.auxiliary | make_job_report | corecount: 1
2019-07-03 14:53:51,630 | INFO | retrieve | pilot.util.auxiliary | make_job_report | event service: False
2019-07-03 14:53:51,630 | INFO | retrieve | pilot.util.auxiliary | make_job_report | --------------------------------------------------
2019-07-03 14:53:51,630 | INFO | retrieve | pilot.util.auxiliary | make_job_report |
2019-07-03 14:53:51,630 | INFO | retrieve | pilot.control.job | has_job_completed | job 4402526846 has completed
2019-07-03 14:53:51,630 | INFO | retrieve | pilot.control.job | retrieve | ready for new job
2019-07-03 14:53:51,630 | DEBUG | retrieve | pilot.control.job | retrieve | getjob_requests=1
2019-07-03 14:54:01,665 | DEBUG | retrieve | pilot.control.job | proceed_with_getjob | proceed_with_getjob called with getjob_requests=1
2019-07-03 14:54:01,668 | DEBUG | retrieve | pilot.util.monitoring | check_local_space | checking local space on /root/Downloads/BOINC/slots/6
2019-07-03 14:54:01,767 | INFO | retrieve | pilot.util.monitoring | check_local_space | sufficient remaining disk space (13839106048 B)
2019-07-03 14:54:01,767 | WARNING | retrieve | pilot.control.job | proceed_with_getjob | since timefloor is set to 0, pilot was only allowed to run one job
2019-07-03 14:54:01,894 | DEBUG | data | pilot.control.data | control | data control ending since graceful_stop has been set
2019-07-03 14:54:01,917 | WARNING | queue_monitoring | pilot.util.common | should_abort | data:queue_monitoring:received graceful stop - abort after this iteration
2019-07-03 14:54:02,002 | DEBUG | payload | pilot.control.payload | control | payload control ending since graceful_stop has been set
2019-07-03 14:54:02,016 | INFO | monitor | pilot.control.monitor | control | monitor control has ended
2019-07-03 14:54:02,087 | DEBUG | copytool_in | pilot.control.data | copytool_in | copytool_in ended since graceful_stop has been set
2019-07-03 14:54:02,198 | WARNING | copytool_out | pilot.util.common | should_abort | data:copytool_out:received graceful stop - abort after this iteration
2019-07-03 14:54:02,199 | DEBUG | copytool_out | pilot.control.data | copytool_out | will abort
2019-07-03 14:54:02,590 | DEBUG | job | pilot.control.job | control | job control ending since graceful_stop has been set
2019-07-03 14:54:02,799 | INFO | validate_post | pilot.control.payload | validate_post | validate_post has finished
2019-07-03 14:54:03,218 | DEBUG | copytool_out | pilot.control.data | copytool_out | aborting
2019-07-03 14:54:03,221 | DEBUG | copytool_out | pilot.control.data | copytool_out | copytool_out has finished
2019-07-03 14:54:03,679 | WARNING | queue_monitor | pilot.util.common | should_abort | job:queue_monitor:received graceful stop - abort after this iteration
2019-07-03 14:54:03,679 | INFO | queue_monitor | pilot.control.job | queue_monitor | [job] queue monitor has finished
2019-07-03 14:54:05,181 | INFO | queue_monitoring | pilot.control.data | queue_monitoring | [data] queue monitor has finished
2019-07-03 14:54:16,957 | WARNING | job_monitor | pilot.control.job | check_job_monitor_waiting_time | no jobs in monitored_payloads queue (waited for 61 s)
2019-07-03 14:54:16,957 | INFO | job_monitor | pilot.control.job | job_monitor | job monitor has finished
2019-07-03 14:54:16,958 | INFO | MainThread | pilot.workflow.generic | run | end of generic workflow (traces error code: 0)
2019-07-03 14:54:16,958 | INFO | MainThread | root | wrap_up | traces error code: 0
2019-07-03 14:54:16,959 | INFO | MainThread | root | wrap_up | pilot has finished
***************diag file************
runtimeenvironments=APPS/HEP/ATLAS-SITE;
Processors=1
WallTime=50171.08s
KernelTime=1470.70s
UserTime=49594.36s
CPUUsage=101%
MaxResidentMemory=2007652kB
AverageResidentMemory=0kB
AverageTotalMemory=0kB
AverageUnsharedMemory=0kB
AverageUnsharedStack=0kB
AverageSharedMemory=0kB
PageSize=4096B
MajorPageFaults=9821
MinorPageFaults=20021740
Swaps=0
ForcedSwitches=609242
WaitSwitches=26808085
Inputs=3409312
Outputs=318624
SocketReceived=0
SocketSent=0
Signals=0
nodename=maeax@APU8S
exitcode=0
******************************WorkDir***********************
insgesamt 384748
drwxrwx--x. 8 root root 4096 3. Jul 16:54 .
drwxr-x--x. 9 root root 4096 3. Jul 02:57 ..
-rw-------. 1 root root 7347128 3. Jul 02:59 agis_ddmendpoints.json
-rw-------. 1 root root 4643590 3. Jul 02:59 agis_schedconf.cvmfs.json
drwx------. 2 root root 4096 3. Jul 02:58 .alrb
drwxr-xr-x. 3 root root 4096 3. Jul 02:58 APPS
drwxr-xr-x. 2 root root 4096 3. Jul 02:59 .arc
-rw-------. 1 root root 549 3. Jul 02:58 .asetup
-rw-------. 1 root root 4198 3. Jul 03:00 .asetup.save
-rw-r--r--. 1 root root 0 3. Jul 02:57 boinc_lockfile
-rw-r--r--. 1 root root 8192 3. Jul 16:54 boinc_mmap_file
-rw-r--r--. 1 root root 537 3. Jul 16:52 boinc_task_state.xml
-rw-r--r--. 1 root root 376362421 3. Jul 02:58 EVNT.17323642._000007.pool.root.1
-rw-------. 1 root root 72824 3. Jul 16:53 heartbeat.json
-rw-r--r--. 1 root root 5469 3. Jul 02:57 init_data.xml
-rw-r--r--. 1 root root 246317 3. Jul 02:58 input.tar.gz
-rw-r--r--. 1 root root 112 3. Jul 02:57 job.xml
-rw-------. 1 root root 2261788 3. Jul 16:54 log.18514543._000336.job.log.1
-rw-------. 1 root root 359151 3. Jul 16:53 log.18514543._000336.job.log.tgz.1
-rw-------. 1 root root 306 3. Jul 16:53 memory_monitor_summary.json
-rw-------. 1 root root 494 3. Jul 16:54 NteMDmNbg2unShfckohDCDFpABFKDmABFKDmw4MODmABFKDmU5dvQo.diag
-rw-------. 1 root root 391 3. Jul 16:54 output.list
-rw-------. 1 4871 1028 2867 3. Jul 00:38 pandaJobData.out
drwxrwx---. 2 root root 4096 3. Jul 16:53 PanDA_Pilot-4402526846
drwxr-xr-x. 3 501 games 4096 31. Mai 14:36 pilot2
-rw-r--r--. 1 root root 237372 24. Jun 09:16 pilot2.tar.gz
-rw-------. 1 root root 2242564 3. Jul 16:54 pilotlog.txt
-rw-r--r--. 1 root root 4468 3. Jul 00:35 queuedata.json
-rw-r--r--. 1 root root 815 3. Jul 02:58 RTE.tar.gz
-rwxr-xr-x. 1 root root 8512 3. Jul 02:57 run_atlas
-rwx------. 1 4871 1028 15232 3. Jul 00:38 runpilot2-wrapper.sh
-rw-r--r--. 1 root root 692 3. Jul 16:54 runtime_log
-rw-r--r--. 1 root root 7087 3. Jul 16:54 runtime_log.err
drwxrwx--x. 2 root root 4096 3. Jul 16:54 shared
-rw-r--r--. 1 root root 8714 3. Jul 02:58 start_atlas.sh
-rw-r--r--. 1 root root 16742 3. Jul 16:54 stderr.txt
-rw-r--r--. 1 root root 107 3. Jul 02:57 wrapper_26015_x86_64-pc-linux-gnu
-rw-r--r--. 1 root root 28 3. Jul 16:54 wrapper_checkpoint.txt
running start_atlas return value is 0
Parent exit 0
child process exit 0
16:54:17 (5362): run_atlas exited; CPU time 49595.082401
16:54:17 (5362): called boinc_finish(0)
</stderr_txt>
]]>
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